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Homology
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: D8LT91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT91_ECTSI) HSP 1 Score: 246 bits (628), Expect = 6.680e-76 Identity = 148/333 (44.44%), Postives = 184/333 (55.26%), Query Frame = 1
Query: 1 SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDXXXXXXXXXKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTRCRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTRDGPEASRVARGGEXXXXXXXXXXGDIGGRGDESGERPSDAPLEREGHPSEDDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLC 999
S+DGVVK WN+ERRR +F ATS+ GV RLD L KIVSQGRD L GG G G++ + + P P++ L TGAFHFCQFALTR R K N+ DP Q + R P G G G+ + PS A +G + S SFAENV+LAP G++ V LWDLR ++T AP DAE+KGMVMC+RL+G+SPSCA P+AV GHD+GHLC YDLRA+S L+E RLH+ PLLCVD+GSSC QGVSGSA +SI+VFR+ +K+ C
Sbjct: 37 SEDGVVKLWNLERRRAFAKFEATSHGMGVQRLDHLGRGKIVSQGRDMLIKVWDAESL--AAGGGSGVGSSSRAAIT---PQPLQVLPTGAFHFCQFALTRWRDEARPKGKESTNSSXXXXXXXDPXXXXXXXXXQGE----------EERSPP-------------------CGQTGREGEAAEPAPSAAAAANDGEAQQGSFLSD-ESSFAENVMLAPCGQQTLVSLWDLRKARPSFTFAPKDAEQKGMVMCVRLLGESPSCASPFAVVGHDAGHLCVYDLRATSAEPLLEMRLHKAPLLCVDVGSSCRQGVSGSADESINVFRLSTRKASC 334
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: A0A6H5KCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI8_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.080e-72 Identity = 150/343 (43.73%), Postives = 186/343 (54.23%), Query Frame = 1
Query: 1 SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDXXXXXXXXXKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTRCRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTRDGPEASRVARGGEXXXXXXXXXXGDIGGRGDESGERPSDAPLEREGHPSEDDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLC---DVVHTFR 1020
S+DGVVK WN+ERRR EF ATS+ GV RLD L KIVSQGRD L GG G G++ + + P P++ L TGAFHFCQFALTR R K N+ G G G GD + PS A + E ++ S SFAENV+LAP G++ V LWDLR ++T AP DAE+KGMVMC+RL+G+SPSCA P+AV GHD+GHLC YDLRA+S L+ESRLH+ PLLCVD+GSSC QGVSGSA +SI+VF + +K+ C +VV +FR
Sbjct: 37 SEDGVVKLWNLERRRAFAEFEATSHGMGVQRLDHLGRGKIVSQGRDMLIKVWDAESL--AAGGGSGVGSSSRASIT---PQPLQVLPTGAFHFCQFALTRWREEARPKGKESTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------GQTGREGDAAEPAPSAAADDGE---AQQGSFLSDESSFAENVMLAPCGQQTLVSLWDLRKARPSFTFAPKDAEQKGMVMCVRLLGESPSCASPFAVVGHDAGHLCVYDLRATSAEPLLESRLHKVPLLCVDVGSSCRQGVSGSADESINVFTLSTRKASCGSCEVVKSFR 342
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: A0A7M7HFD8_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HFD8_STRPU) HSP 1 Score: 54.7 bits (130), Expect = 9.420e-5 Identity = 30/107 (28.04%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 646 LLAPSGEEHTVRLWDLRDRASAYTIAPVDAERK-GMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSI 963
L G+ VR+ L+D + P D + GM MC++ M + + G++ G + +D+ SS + ES++H+EP++C++ S+ +G+SGS+ D +
Sbjct: 124 LAVSGGQMSEVRVISLKDHQVIAKLLPPDGHKSLGMPMCMKFMDEKQ------LLIGYEDGTVALWDV--SSCCIMSESKVHQEPVMCLEYCSASNRGISGSSTDRL 222
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Viridiplantae |
| Seed ortholog score | 68.6 |
| Seed ortholog evalue | 6.7e-09 |
| Seed eggNOG ortholog | 3711.Bra011142.1-P |
| GOs | GO:0000003,GO:0000075,GO:0000151,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006282,GO:0006810,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0009555,GO:0009636,GO:0009663,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010154,GO:0010162,GO:0010431,GO:0010496,GO:0010497,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0021700,GO:0022414,GO:0022611,GO:0031323,GO:0031461,GO:0031570,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034330,GO:0035670,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045216,GO:0045786,GO:0045787,GO:0048229,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048700,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051716,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0071156,GO:0071158,GO:0071695,GO:0071840,GO:0072718,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090567,GO:0097327,GO:0097439,GO:0099402,GO:1902494,GO:1990234,GO:2000026,GO:2000280,GO:2001020 |
| EggNOG free text desc. | Guanine nucleotide-binding protein subunit beta-like protein 1 homolog |
| EggNOG OGs | 37IE2@33090,3GF2H@35493,3HTWE@3699,COG2319@1,KOG0322@2759 |
| COG Functional cat. | S |
| Best tax level | Brassicales |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | G-protein beta WD-40 repeat |
| Ec32 ortholog | Ec-12_005650.1 |
| Exons | 6 |
| Model size | 1029 |
| Cds size | 1026 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929914.920413-CDS-H-elongata_contig15512:5091..5127 | 1622929914.920413-CDS-H-elongata_contig15512:5091..5127 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5092..5127 - |
| 1691679206.7350345-CDS-H-elongata_contig15512:5091..5127 | 1691679206.7350345-CDS-H-elongata_contig15512:5091..5127 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5092..5127 - |
| 1622929914.9390228-CDS-H-elongata_contig15512:5442..5534 | 1622929914.9390228-CDS-H-elongata_contig15512:5442..5534 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5443..5534 - |
| 1691679206.7470677-CDS-H-elongata_contig15512:5442..5534 | 1691679206.7470677-CDS-H-elongata_contig15512:5442..5534 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5443..5534 - |
| 1622929914.9526062-CDS-H-elongata_contig15512:5756..5909 | 1622929914.9526062-CDS-H-elongata_contig15512:5756..5909 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5757..5909 - |
| 1691679206.755586-CDS-H-elongata_contig15512:5756..5909 | 1691679206.755586-CDS-H-elongata_contig15512:5756..5909 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 5757..5909 - |
| 1622929914.968629-CDS-H-elongata_contig15512:6096..6166 | 1622929914.968629-CDS-H-elongata_contig15512:6096..6166 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 6097..6166 - |
| 1691679206.763656-CDS-H-elongata_contig15512:6096..6166 | 1691679206.763656-CDS-H-elongata_contig15512:6096..6166 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 6097..6166 - |
| 1622929914.982721-CDS-H-elongata_contig15512:6385..6935 | 1622929914.982721-CDS-H-elongata_contig15512:6385..6935 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 6386..6935 - |
| 1691679206.7710247-CDS-H-elongata_contig15512:6385..6935 | 1691679206.7710247-CDS-H-elongata_contig15512:6385..6935 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 6386..6935 - |
| 1622929914.9961722-CDS-H-elongata_contig15512:7170..7295 | 1622929914.9961722-CDS-H-elongata_contig15512:7170..7295 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 7171..7295 - |
| 1691679206.782343-CDS-H-elongata_contig15512:7170..7295 | 1691679206.782343-CDS-H-elongata_contig15512:7170..7295 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15512 7171..7295 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15512.3613.1 >prot_H-elongata_contig15512.3613.1 ID=prot_H-elongata_contig15512.3613.1|Name=mRNA_H-elongata_contig15512.3613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=342bp
SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDGLIK VWSAEKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTR CRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTR DGPEASRVARGGEESNRRRGDDDGDIGGRGDESGERPSDAPLEREGHPSE DDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGM VMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPL LCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLCDVVHTFRSQ back to topmRNA from alignment at H-elongata_contig15512:5091..7295- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig15512.3613.1 ID=mRNA_H-elongata_contig15512.3613.1|Name=mRNA_H-elongata_contig15512.3613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2205bp|location=Sequence derived from alignment at H-elongata_contig15512:5091..7295- (Himanthalia elongata Himel1 dioecious) TCCCAGGACGGCGTGGTGAAAGCGTGGAATATCGAGCGAAGGAGAGTCTG
TGGCGAGTTCGCTGCGACTTCGAACAATTTCGGGGTTCTCAGGCTAGACA
CTCTTGCTTCGGATAAAATCGTGAGGTGAGATGCGCCCGGCAATTGGGGC
ATACTGGTCTTTTGCCAACTCTGCTATCGGCAGGCTCATATTGGTGTAGC
CCAGAGTCTTGAACTTCCCCCTCTTCCTCAGACGCGCAAAGGAATCGCCG
ACTGAGGGATTTTCCTATTCTCGACACAGCCTGCCGCTCAATCCGCTAGC
GCGGTGCTATTCTGTGAACCACGCGAAAAATGTTTTTTACGGACGTTTTT
TTTTTCCTAGTCAAGGCCGGGACGGTCTGATCAAGGTGTGGAGCGCGGAG
AAACTTCCAGGTTGCGGCCAAGGAGGGCACGGCAAGGGAACCAACCCACA
TAGTCCCCTGCTTGCTCCAGCACCAGCGCCCATCCGCGAGCTTGCCACCG
GAGCGTTTCACTTCTGCCAGTTTGCCTTGACGCGATGTCGACTGCCGACG
GGGACAAGCGTAAAGGCAAAGGCAAATAATCGAAGATTGTATGATGGTTT
TCAAGATCCACCTGAAACCTTCCTACCGGACCGTCGGCAAAAAAAAATCA
ACGATAACAGCGGGGGTCATAGCACACACACCCGTGATGGGCCTGAGGCT
TCCCGTGTCGCGCGCGGCGGGGAAGAGTCCAACCGACGGCGTGGCGATGA
CGATGGTGATATTGGCGGCCGCGGAGACGAATCGGGCGAGCGGCCTAGTG
ATGCCCCTCTAGAGCGCGAGGGTCACCCCAGCGAGGATGATTGCAGCAGT
AGCTGCACCGATTCCTTCGCGGAGAACGTTCTACTGGCCCCCTCCGGCGA
AGAACACACGGTGCGAGTTTCCACTAAATGGCTTTCAGAAGAAACAATTT
CGGCGTACCAGGGACTTTTGGCCATCCGGGTCGTGTTCCTAATGGAGCAA
TATTTTTCACGTTCGCGCGCCCGACACACCGTGGTACTACCTCATCCAAG
TAATTGTGGGTTCGCTGTACATTTTTAATCTCGTACATTCATTGGCGAGT
GCTTTTTTCCGTCTGCACTCCACGCGTAGGTACGACTCTGGGACCTGCGC
GACAGGGCATCGGCGTACACCATCGCACCCGTTGATGCCGAGCGGAAAGG
TGGGCACCTTTTTTCCTCGTCTGGTTCAGCCTCACGACTTCATTTGATTT
TTCATGCTGCGCCCGAAGCAGCGGAATCGCGTCTAGCTCTCGAAGAATAA
TCGTTTTGAGACTCGTTAGTCGTGCAAGCCCGCCGCTAACGCTGTTGTTG
ACTAATCGCTCCTGGCCGGTTTCTCTTTTGCCATAGGCATGGTAATGTGT
TTGAGGCTCATGGGGCAATCGCCGTCCTGCGCGGTCCCGTACGCGGTCTG
TGGACACGATAGCGGACATCTTTGCTTTTACGACCTGAGGGCCAGCTCTA
GAACGGCCTTGATGGAGTCCCGGCTGCACGAGGAGCCACGTGAGATATCT
CGTCGTTGTAAAGATGAAAGGGTCGATTTGATCGCTCGCTATCTGGGGTT
ATCGTGTAGAACTTAACTGCGAAAAGGGTTCTTTTCAATACGATACATTT
ATTTTTTCATGTAAGGGTTTTGTAAAGGATGATTTCCATATGTGTCCATG
CCCATGGCGCCTCGCGATGCATCTTCAGCAGACATTTGTGTTCCTCTCAA
TCCTTGCGCAGTACTCTGCGTGGATATCGGATCGTCGTGCACCCAAGGCG
TGTCTGGATCCGCAGGCGACAGCATTCACGTTTTTAGGATCAAACTGAAA
AAGGTAAAGGAGGTTGCCCATTATTTAATTTCGTTCTTATCAGAGGCACA
CGGCAGTAGAACGGGTTTTTTACCTTTTCTCGTGCATTTTTCTCAGGGGG
GTGGAGGGGGGGCTATTACAACCCCGGCGCAATATGTGACGGGTCATGAA
ATGCCATTCCATGATTTCGACGCGCTTAGTCGGACGTCAGTGCCTCTGTC
TTGGAAAGCCTTGCCTCAATACATAGGGGCGCTCAAGACGGAAGTGATAT
GCGAGCGAGGAGCTTCCACCCTCAATCGCAGCATATTCGTTACCATCCGT
TGTCTCTCGCCTGCGCAGAGTTTATGCGACGTGGTCCACACCTTCCGTTC
CCAGC back to topCoding sequence (CDS) from alignment at H-elongata_contig15512:5091..7295- >mRNA_H-elongata_contig15512.3613.1 ID=mRNA_H-elongata_contig15512.3613.1|Name=mRNA_H-elongata_contig15512.3613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2052bp|location=Sequence derived from alignment at H-elongata_contig15512:5091..7295- (Himanthalia elongata Himel1 dioecious) TCCCAGGACGGCGTGGTGAAAGCGTGGAATATCGAGCGAAGGAGAGTCTG TGGCGAGTTCGCTGCGACTTCGAACAATTTCGGGGTTCTCAGGCTAGACA CTCTTGCTTCGGATAAAATCGTGAGTCCCAGGACGGCGTGGTGAAAGCGT GGAATATCGAGCGAAGGAGAGTCTGTGGCGAGTTCGCTGCGACTTCGAAC AATTTCGGGGTTCTCAGGCTAGACACTCTTGCTTCGGATAAAATCGTGAG TCAAGGCCGGGACGGTCTGATCAAGGTGTGGAGCGCGGAGAAACTTCCAG GTTGCGGCCAAGGAGGGCACGGCAAGGGAACCAACCCACATAGTCCCCTG CTTGCTCCAGCACCAGCGCCCATCCGCGAGCTTGCCACCGGAGCGTTTCA CTTCTGCCAGTTTGCCTTGACGCGATGTCGACTGCCGACGGGGACAAGCG TAAAGGCAAAGGCAAATAATCGAAGATTGTATGATGGTTTTCAAGATCCA CCTGAAACCTTCCTACCGGACCGTCGGCAAAAAAAAATCAACGATAACAG CGGGGGTCATAGCACACACACCCGTGATGGGCCTGAGGCTTCCCGTGTCG CGCGCGGCGGGGAAGAGTCCAACCGACGGCGTGGCGATGACGATGGTGAT ATTGGCGGCCGCGGAGACGAATCGGGCGAGCGGCCTAGTGATGCCCCTCT AGAGCGCGAGGGTCACCCCAGCGAGGATGATTGCAGCAGTAGCTGCACCG ATTCCTTCGCGGAGAACGTTCTACTGGCCCCCTCCGGCGAAGAACACACG TCAAGGCCGGGACGGTCTGATCAAGGTGTGGAGCGCGGAGAAACTTCCAG GTTGCGGCCAAGGAGGGCACGGCAAGGGAACCAACCCACATAGTCCCCTG CTTGCTCCAGCACCAGCGCCCATCCGCGAGCTTGCCACCGGAGCGTTTCA CTTCTGCCAGTTTGCCTTGACGCGATGTCGACTGCCGACGGGGACAAGCG TAAAGGCAAAGGCAAATAATCGAAGATTGTATGATGGTTTTCAAGATCCA CCTGAAACCTTCCTACCGGACCGTCGGCAAAAAAAAATCAACGATAACAG CGGGGGTCATAGCACACACACCCGTGATGGGCCTGAGGCTTCCCGTGTCG CGCGCGGCGGGGAAGAGTCCAACCGACGGCGTGGCGATGACGATGGTGAT ATTGGCGGCCGCGGAGACGAATCGGGCGAGCGGCCTAGTGATGCCCCTCT AGAGCGCGAGGGTCACCCCAGCGAGGATGATTGCAGCAGTAGCTGCACCG ATTCCTTCGCGGAGAACGTTCTACTGGCCCCCTCCGGCGAAGAACACACG GTACGACTCTGGGACCTGCGCGACAGGGCATCGGCGTACACCATCGCACC CGTTGATGCCGAGCGGAAAGGTACGACTCTGGGACCTGCGCGACAGGGCA TCGGCGTACACCATCGCACCCGTTGATGCCGAGCGGAAAGGCATGGTAAT GTGTTTGAGGCTCATGGGGCAATCGCCGTCCTGCGCGGTCCCGTACGCGG TCTGTGGACACGATAGCGGACATCTTTGCTTTTACGACCTGAGGGCCAGC TCTAGAACGGCCTTGATGGAGTCCCGGCTGCACGAGGAGCCACGCATGGT AATGTGTTTGAGGCTCATGGGGCAATCGCCGTCCTGCGCGGTCCCGTACG CGGTCTGTGGACACGATAGCGGACATCTTTGCTTTTACGACCTGAGGGCC AGCTCTAGAACGGCCTTGATGGAGTCCCGGCTGCACGAGGAGCCACTACT CTGCGTGGATATCGGATCGTCGTGCACCCAAGGCGTGTCTGGATCCGCAG GCGACAGCATTCACGTTTTTAGGATCAAACTGAAAAAGTACTCTGCGTGG ATATCGGATCGTCGTGCACCCAAGGCGTGTCTGGATCCGCAGGCGACAGC ATTCACGTTTTTAGGATCAAACTGAAAAAGAGTTTATGCGACGTGGTCCA CACCTTCCGTTCCCAGAGTTTATGCGACGTGGTCCACACCTTCCGTTCCC AG back to top
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