prot_H-elongata_contig15512.3613.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15512.3613.1
Unique Nameprot_H-elongata_contig15512.3613.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length342
Homology
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: D8LT91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT91_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 6.680e-76
Identity = 148/333 (44.44%), Postives = 184/333 (55.26%), Query Frame = 0
Query:    1 SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDXXXXXXXXXKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTRCRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTRDGPEASRVARGGEXXXXXXXXXXGDIGGRGDESGERPSDAPLEREGHPSEDDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLC 333
            S+DGVVK WN+ERRR   +F ATS+  GV RLD L   KIVSQGRD          L     GG G G++  + +    P P++ L TGAFHFCQFALTR R       K   N+        DP         Q +            R  P                    G  G  G+ +   PS A    +G   +    S    SFAENV+LAP G++  V LWDLR    ++T AP DAE+KGMVMC+RL+G+SPSCA P+AV GHD+GHLC YDLRA+S   L+E RLH+ PLLCVD+GSSC QGVSGSA +SI+VFR+  +K+ C
Sbjct:   37 SEDGVVKLWNLERRRAFAKFEATSHGMGVQRLDHLGRGKIVSQGRDMLIKVWDAESL--AAGGGSGVGSSSRAAIT---PQPLQVLPTGAFHFCQFALTRWRDEARPKGKESTNSSXXXXXXXDPXXXXXXXXXQGE----------EERSPP-------------------CGQTGREGEAAEPAPSAAAAANDGEAQQGSFLSD-ESSFAENVMLAPCGQQTLVSLWDLRKARPSFTFAPKDAEQKGMVMCVRLLGESPSCASPFAVVGHDAGHLCVYDLRATSAEPLLEMRLHKAPLLCVDVGSSCRQGVSGSADESINVFRLSTRKASC 334          
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: A0A6H5KCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI8_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.080e-72
Identity = 150/343 (43.73%), Postives = 186/343 (54.23%), Query Frame = 0
Query:    1 SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDXXXXXXXXXKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTRCRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTRDGPEASRVARGGEXXXXXXXXXXGDIGGRGDESGERPSDAPLEREGHPSEDDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLC---DVVHTFR 340
            S+DGVVK WN+ERRR   EF ATS+  GV RLD L   KIVSQGRD          L     GG G G++  + +    P P++ L TGAFHFCQFALTR R       K   N+                            G                             G  G  GD +   PS A  + E   ++     S   SFAENV+LAP G++  V LWDLR    ++T AP DAE+KGMVMC+RL+G+SPSCA P+AV GHD+GHLC YDLRA+S   L+ESRLH+ PLLCVD+GSSC QGVSGSA +SI+VF +  +K+ C   +VV +FR
Sbjct:   37 SEDGVVKLWNLERRRAFAEFEATSHGMGVQRLDHLGRGKIVSQGRDMLIKVWDAESL--AAGGGSGVGSSSRASIT---PQPLQVLPTGAFHFCQFALTRWREEARPKGKESTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------GQTGREGDAAEPAPSAAADDGE---AQQGSFLSDESSFAENVMLAPCGQQTLVSLWDLRKARPSFTFAPKDAEQKGMVMCVRLLGESPSCASPFAVVGHDAGHLCVYDLRATSAEPLLESRLHKVPLLCVDVGSSCRQGVSGSADESINVFTLSTRKASCGSCEVVKSFR 342          
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: A0A835YXT7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.470e-11
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 0
Query:  216 LLAPSGEEHTVRLWDLRDRASAYTI-APVDA----ERKGMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRA------SSRTALMESRLHEEPLLCVDI 305
            +LAP  E+  V+LWDLR +A   TI AP DA    +  GMVMC RL+G     A P A  G++ G L  ++LRA      S+R  +  ++LH+EPL+C+DI
Sbjct:   97 VLAPCEEQSRVQLWDLRAQAPQLTIDAPTDAADGSKSAGMVMCCRLLGGG---ARPLAAAGYEDGSLACFELRAAAAASSSTRALVARAKLHDEPLMCLDI 194          
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Match: A0A7M7HFD8_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HFD8_STRPU)

HSP 1 Score: 54.7 bits (130), Expect = 9.420e-5
Identity = 30/107 (28.04%), Postives = 57/107 (53.27%), Query Frame = 0
Query:  216 LLAPSGEEHTVRLWDLRDRASAYTIAPVDAERK-GMVMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPLLCVDIGSSCTQGVSGSAGDSI 321
            L    G+   VR+  L+D      + P D  +  GM MC++ M +         + G++ G +  +D+  SS   + ES++H+EP++C++  S+  +G+SGS+ D +
Sbjct:  124 LAVSGGQMSEVRVISLKDHQVIAKLLPPDGHKSLGMPMCMKFMDEKQ------LLIGYEDGTVALWDV--SSCCIMSESKVHQEPVMCLEYCSASNRGISGSSTDRL 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15512.3613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LT91_ECTSI6.680e-7644.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCI8_9PHAE1.080e-7243.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXT7_9STRA3.470e-1143.56WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7M7HFD8_STRPU9.420e-528.04Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19854:SF1GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 1coord: 1..328
NoneNo IPR availablePANTHERPTHR19854TRANSDUCIN BETA-LIKE 3coord: 1..328
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..62
score: 9.81
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..327

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15512contigH-elongata_contig15512:5092..7295 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15512.3613.1mRNA_H-elongata_contig15512.3613.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15512 5091..7295 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15512.3613.1 ID=prot_H-elongata_contig15512.3613.1|Name=mRNA_H-elongata_contig15512.3613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=342bp
SQDGVVKAWNIERRRVCGEFAATSNNFGVLRLDTLASDKIVSQGRDGLIK
VWSAEKLPGCGQGGHGKGTNPHSPLLAPAPAPIRELATGAFHFCQFALTR
CRLPTGTSVKAKANNRRLYDGFQDPPETFLPDRRQKKINDNSGGHSTHTR
DGPEASRVARGGEESNRRRGDDDGDIGGRGDESGERPSDAPLEREGHPSE
DDCSSSCTDSFAENVLLAPSGEEHTVRLWDLRDRASAYTIAPVDAERKGM
VMCLRLMGQSPSCAVPYAVCGHDSGHLCFYDLRASSRTALMESRLHEEPL
LCVDIGSSCTQGVSGSAGDSIHVFRIKLKKSLCDVVHTFRSQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf