mRNA_H-elongata_contig155115.3611.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A6H5LDQ8_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDQ8_9PHAE) HSP 1 Score: 181 bits (459), Expect = 3.640e-53 Identity = 105/171 (61.40%), Postives = 113/171 (66.08%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGH--------------------GGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFG 453
A+SLNNTLIGGRKR+YYHDD+WN+KYL KFKWDHLTEKVAYERRVR QKLRLETMQAKRENARYVELVESGRSFAK+EER GG E G A GV D HRRIRRRFKQS+PV DVGG +D VLRS+FG
Sbjct: 173 TAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGGGEGVPGNPA-PAGVGDSHRRIRRRFKQSNPVGDVGGXXXXXMDAKVLRSLFG 342
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: D7FRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK9_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.820e-52 Identity = 104/176 (59.09%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGD-------------------------EAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFG 453
A+SLNNTLIGGRKR+YYHDD+WN+KYL KFKWDHLTEKVAYERRVR QKLRLETMQAKRENARYVELVESGRSFAK+EER E G A GV D HRRIRRRFKQSSPV DVG +D VLRSVFG
Sbjct: 17 TAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVPG-NAAPAGVGDSHRRIRRRFKQSSPVGDVGXXXXXXMDAKVLRSVFG 191
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A7S3US98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US98_HETAK) HSP 1 Score: 126 bits (316), Expect = 1.200e-33 Identity = 75/155 (48.39%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTD-VLRSVFGASS 462
VA LNN IGG+KR +Y +DIWNIKYL KFKW HLTEK+AYE+RVREQKLRLE MQAK+ENA Y+ELVE G+ K+EE++ K+ + +G +P E + +IRR FKQ ++ G D +LRSVF ++S
Sbjct: 46 VAQHLNNKQIGGKKRHFYREDIWNIKYLKKFKWRHLTEKIAYEKRVREQKLRLEMMQAKKENAEYIELVEKGKKIQKMEEKRAKKNKGSGNEPSPTTAEKE-------------ERPSKIRRTFKQLKGSNELTGDTKNARVGDSLLRSVFSSTS 187
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: K3WDP5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP5_GLOUD) HSP 1 Score: 125 bits (313), Expect = 2.240e-32 Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFGASSKKRQ 474
VA LN IGGRKR YYHDDIWN+KYL FKWDHLTEK+AYE R+R+QKLR+E QAK+EN Y+E VE + F K+EERK SGA G +++IRR F+Q +P + DT +L VF ++ KKR+
Sbjct: 121 VAKVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLEKVEQSKKFEKMEERK---------------------SGANGGANDRDAQYQQIRRTFQQKAPTSSKQHSSLGSSDT-LLEKVFASAHKKRK 256
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A7S2XZV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV6_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.420e-31 Identity = 69/151 (45.70%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFG 453
VA SLNNT IGG+KR +Y +D+WNIKYL FKW HLTEK+AYERRV EQ+LR+E MQA++EN ++ELVE G+ +EERK+ E G PG ++ +G ++I R+F Q++ + + +D VL+SVFG
Sbjct: 122 VAASLNNTQIGGKKRDFYREDMWNIKYLKHFKWRHLTEKIAYERRVAEQRLRMEVMQARKENQAFLELVEQGKQIKGMEERKK----EKGANKDPGRLSKSTSA------SGENRLGKKIHRKFHQTTTITQTSDNI---VDAQVLKSVFG 259
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A8J9SXP0_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SXP0_PHATR) HSP 1 Score: 119 bits (298), Expect = 2.460e-31 Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKR 255
VA ++NNT + G+KRS++HDD+WN+KYL KF+W HLTEKVAYERRVREQKLRLETMQA+RE A Y LVE+G+ +IE RKRKR
Sbjct: 70 VAANMNNTPMSGQKRSHHHDDLWNLKYLSKFQWSHLTEKVAYERRVREQKLRLETMQARRETASYKHLVETGKKVDRIEARKRKR 154
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A3M6VQV5_9STRA (RRM domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQV5_9STRA) HSP 1 Score: 120 bits (302), Expect = 6.080e-31 Identity = 70/158 (44.30%), Postives = 90/158 (56.96%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFGASSKKRQ 474
VA LN T IGGRKR YYHDDIWN+KYL FKWDHLTEK+AYE R+R+QKLR+E QAK+EN Y+E V+ + F K+E RK + + K G D +++RR F Q +P + + L L VF ASSK ++
Sbjct: 103 VAKMLNTTQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMEARK---------------------ADKKMDKDGAHDTMQQVRRTFHQKTPTSSK---QNQSLGDRDLEKVFVASSKNKK 236
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A7S2WFD3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFD3_9STRA) HSP 1 Score: 121 bits (303), Expect = 9.560e-31 Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYH--RRIRRRFKQSSPVADVGGGVGKGLDTDVLRSV 447
VA+SLNNT +GG+KR +Y +DIWN+KYL KF W HLTEK AYERRVRE KLRLE + AK++N + E+V+ + IEERK R R G D A E+ TG+A +IRRRF Q P+ + G LD+D+L +
Sbjct: 123 VAESLNNTKVGGKKRGFYTEDIWNLKYLRKFTWSHLTEKKAYERRVREHKLRLEMVAAKKQNEEFREMVDKNKMIRSIEERKSSRK----RAAENAEGED--AGDLESSTTGMAGLGSMNKIRRRFHQHKPIVEAKRGRAAPLDSDILSKM 267
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: H3HB09_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB09_PHYRM) HSP 1 Score: 120 bits (301), Expect = 9.690e-31 Identity = 70/161 (43.48%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGG---GVGKGLDTDVLRSVFGASSKKRQ 474
VA LN TLIGGRKR YYHDD+WN+KYL FKWDHLTEK+AYE R+R+QKLR+E QAK+EN Y+E V+ + F K++ RK + + + + D +++RR F Q +P + G G GL L VF ASSK ++
Sbjct: 106 VAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMDARKADKKQHS---------------------SAAQDVMQQVRRTFHQKAPTSSKQNQSLGDGNGL----LEKVFVASSKNKK 241
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Match: A0A8K1FEZ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ1_PYTOL) HSP 1 Score: 119 bits (299), Expect = 2.020e-30 Identity = 74/158 (46.84%), Postives = 95/158 (60.13%), Query Frame = 1
Query: 1 VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKLRLETMQAKRENARYVELVESGRSFAKIEERKRKRYEEAGRTVTPGHGGDEAASGAEAGKTGVADYHRRIRRRFKQSSPVADVGGGVGKGLDTDVLRSVFGASSKKRQ 474
VA LN IGGRKR YYHDDIWN+KYL FKW+HLTEK+AYE R+R+QKLR+E QAK+EN Y+E VE + F K+EERK GG +A++ A+ +IRR F Q +P A G + ++L VF AS+KKR+
Sbjct: 115 VATMLNTKQIGGRKRDYYHDDIWNLKYLKGFKWEHLTEKIAYENRIRDQKLRMEIAQAKKENDAYLERVEQSKQFTKMEERK---------------GGKQASADAQ-----------QIRRTFVQKAP-ASAKDEQSLGGNAELLNKVF-ASNKKRK 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155115.3611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155115.3611.1 >prot_H-elongata_contig155115.3611.1 ID=prot_H-elongata_contig155115.3611.1|Name=mRNA_H-elongata_contig155115.3611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp VADSLNNTLIGGRKRSYYHDDIWNIKYLCKFKWDHLTEKVAYERRVREQKback to top mRNA from alignment at H-elongata_contig155115:407..1088- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155115.3611.1 ID=mRNA_H-elongata_contig155115.3611.1|Name=mRNA_H-elongata_contig155115.3611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=682bp|location=Sequence derived from alignment at H-elongata_contig155115:407..1088- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155115:407..1088- >mRNA_H-elongata_contig155115.3611.1 ID=mRNA_H-elongata_contig155115.3611.1|Name=mRNA_H-elongata_contig155115.3611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig155115:407..1088- (Himanthalia elongata Himel1 dioecious)back to top |