mRNA_H-elongata_contig154837.3600.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 9.590e-15 Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGE 180
IY GM TGI+ L +QAFGA+NNRLVGV FARGTLLTA +F +PV LW+YM+ +++ G+
Sbjct: 95 IYYGMGTGIELLCAQAFGAKNNRLVGVAFARGTLLTAFLF-IPVAFLWFYMENIMLAFGQ 153
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: UPI0002C37858 (MATE efflux family protein LAL5-like isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C37858) HSP 1 Score: 54.3 bits (129), Expect = 9.570e-7 Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSDTTATVFY 213
G+ATG+D +ASQAFGA+N L+ R T+++ LIF +P+ +LW+Y + V++ G+ S T+ + Y
Sbjct: 126 GLATGMDGIASQAFGARNGCLLSHTLQR-TIISLLIFSMPIALLWFYFEPVLIFSGQNSSITSTAITY 192
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: C5DEA2_LACTC (KLTH0C07524p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) TaxID=559295 RepID=C5DEA2_LACTC) HSP 1 Score: 52.8 bits (125), Expect = 3.330e-6 Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSD 192
++ G+AT +DTL QAFGA+ +LVG+ F RG L +L+F P+ +LW+Y +++ LG V D
Sbjct: 85 VFQGLATCLDTLCPQAFGAKQYQLVGLYFQRG-LAISLVFACPIALLWWYSELM---LGAMVDD 144
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A7S3JA02_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JA02_9SPIT) HSP 1 Score: 48.9 bits (115), Expect = 2.080e-5 Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDI 159
I G+A G+DTLASQAFG +NN L G+ F R +++ LIF + L++ DI
Sbjct: 15 ISIGLAAGMDTLASQAFGNRNNYLAGLYFHRAMIISTLIFLPQLVTLYFAEDI 67
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A6B2L4B4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4B4_9EUKA) HSP 1 Score: 50.1 bits (118), Expect = 2.960e-5 Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGE 180
G++ G+DTLASQAFGA N LVGV F + +L + +F +PV IL Y+ + ++V+LG+
Sbjct: 34 GLSNGLDTLASQAFGAGNLPLVGVWF-QVSLWLSFLFSIPVLILLYFTEPIMVSLGQ 89
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A1G4M6S3_LACFM (LAFE_0A04522g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4M6S3_LACFM) HSP 1 Score: 50.1 bits (118), Expect = 3.010e-5 Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYY 150
G+ T +DTL SQA+GA+N RLVG++ R ++T +IFF+P+ I W++
Sbjct: 204 GLCTCLDTLCSQAYGAKNYRLVGILLQRCAVIT-IIFFLPILIAWWF 249
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: W0TFM4_KLUMD (Uncharacterized transporter C4B3.13 n=1 Tax=Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275) TaxID=1003335 RepID=W0TFM4_KLUMD) HSP 1 Score: 49.7 bits (117), Expect = 4.070e-5 Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIV 162
I+ G+AT +DT+ QAFGA N +VG+ F RG ++ L+ +P+T WY D+V
Sbjct: 97 IFIGIATCLDTVCPQAFGAGNYEMVGLYFQRGVAIS-LVCSIPITAFWYKSDVV 149
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A2P6RNE9_ROSCH (Protein DETOXIFICATION n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RNE9_ROSCH) HSP 1 Score: 49.3 bits (116), Expect = 5.550e-5 Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSDTTATVFY 213
G+ATG+D +ASQAFGA+N L+ R T++ LI +P+T+LWY + V++ G+ S ++ + Y
Sbjct: 47 GLATGMDGIASQAFGARNGCLLSHTLQR-TIVLLLILCMPITLLWYNFESVLIHSGQNPSISSIAITY 113
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A1G4J2X4_9SACH (LAMI_0C05688g1_1 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4J2X4_9SACH) HSP 1 Score: 49.3 bits (116), Expect = 5.560e-5 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYY 150
++ GMAT +DTL QA+GA +LVG+ F RG + A +F +P+ +LW++
Sbjct: 88 VFVGMATCLDTLCPQAYGAGQYKLVGLYFQRGLAINA-VFSIPIALLWWF 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154837.3600.1 >prot_H-elongata_contig154837.3600.1 ID=prot_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVback to top mRNA from alignment at H-elongata_contig154837:1001..1228+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154837.3600.1 ID=mRNA_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig154837:1001..1228+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154837:1001..1228+ >mRNA_H-elongata_contig154837.3600.1 ID=mRNA_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig154837:1001..1228+ (Himanthalia elongata Himel1 dioecious)back to top |