mRNA_H-elongata_contig154837.3600.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154837.3600.1
Unique NamemRNA_H-elongata_contig154837.3600.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 9.590e-15
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGE 180
            IY GM TGI+ L +QAFGA+NNRLVGV FARGTLLTA +F +PV  LW+YM+ +++  G+
Sbjct:   95 IYYGMGTGIELLCAQAFGAKNNRLVGVAFARGTLLTAFLF-IPVAFLWFYMENIMLAFGQ 153
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: UPI0002C37858 (MATE efflux family protein LAL5-like isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C37858)

HSP 1 Score: 54.3 bits (129), Expect = 9.570e-7
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSDTTATVFY 213
            G+ATG+D +ASQAFGA+N  L+     R T+++ LIF +P+ +LW+Y + V++  G+  S T+  + Y
Sbjct:  126 GLATGMDGIASQAFGARNGCLLSHTLQR-TIISLLIFSMPIALLWFYFEPVLIFSGQNSSITSTAITY 192
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: C5DEA2_LACTC (KLTH0C07524p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) TaxID=559295 RepID=C5DEA2_LACTC)

HSP 1 Score: 52.8 bits (125), Expect = 3.330e-6
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSD 192
            ++ G+AT +DTL  QAFGA+  +LVG+ F RG L  +L+F  P+ +LW+Y +++   LG  V D
Sbjct:   85 VFQGLATCLDTLCPQAFGAKQYQLVGLYFQRG-LAISLVFACPIALLWWYSELM---LGAMVDD 144
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A7S3JA02_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JA02_9SPIT)

HSP 1 Score: 48.9 bits (115), Expect = 2.080e-5
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDI 159
            I  G+A G+DTLASQAFG +NN L G+ F R  +++ LIF   +  L++  DI
Sbjct:   15 ISIGLAAGMDTLASQAFGNRNNYLAGLYFHRAMIISTLIFLPQLVTLYFAEDI 67
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A6B2L4B4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4B4_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 2.960e-5
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGE 180
            G++ G+DTLASQAFGA N  LVGV F + +L  + +F +PV IL Y+ + ++V+LG+
Sbjct:   34 GLSNGLDTLASQAFGAGNLPLVGVWF-QVSLWLSFLFSIPVLILLYFTEPIMVSLGQ 89
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A1G4M6S3_LACFM (LAFE_0A04522g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4M6S3_LACFM)

HSP 1 Score: 50.1 bits (118), Expect = 3.010e-5
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYY 150
            G+ T +DTL SQA+GA+N RLVG++  R  ++T +IFF+P+ I W++
Sbjct:  204 GLCTCLDTLCSQAYGAKNYRLVGILLQRCAVIT-IIFFLPILIAWWF 249
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: W0TFM4_KLUMD (Uncharacterized transporter C4B3.13 n=1 Tax=Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275) TaxID=1003335 RepID=W0TFM4_KLUMD)

HSP 1 Score: 49.7 bits (117), Expect = 4.070e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIV 162
            I+ G+AT +DT+  QAFGA N  +VG+ F RG  ++ L+  +P+T  WY  D+V
Sbjct:   97 IFIGIATCLDTVCPQAFGAGNYEMVGLYFQRGVAIS-LVCSIPITAFWYKSDVV 149
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A2P6RNE9_ROSCH (Protein DETOXIFICATION n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RNE9_ROSCH)

HSP 1 Score: 49.3 bits (116), Expect = 5.550e-5
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   10 GMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIVVVTLGETVSDTTATVFY 213
            G+ATG+D +ASQAFGA+N  L+     R T++  LI  +P+T+LWY  + V++  G+  S ++  + Y
Sbjct:   47 GLATGMDGIASQAFGARNGCLLSHTLQR-TIVLLLILCMPITLLWYNFESVLIHSGQNPSISSIAITY 113
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BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Match: A0A1G4J2X4_9SACH (LAMI_0C05688g1_1 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4J2X4_9SACH)

HSP 1 Score: 49.3 bits (116), Expect = 5.560e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 IYCGMATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYY 150
            ++ GMAT +DTL  QA+GA   +LVG+ F RG  + A +F +P+ +LW++
Sbjct:   88 VFVGMATCLDTLCPQAYGAGQYKLVGLYFQRGLAINA-VFSIPIALLWWF 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154837.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQ37_9PHAE9.590e-1561.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0002C378589.570e-741.18MATE efflux family protein LAL5-like isoform X1 n=... [more]
C5DEA2_LACTC3.330e-643.75KLTH0C07524p n=1 Tax=Lachancea thermotolerans (str... [more]
A0A7S3JA02_9SPIT2.080e-547.17Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A6B2L4B4_9EUKA2.960e-549.12Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A1G4M6S3_LACFM3.010e-548.94LAFE_0A04522g1_1 n=1 Tax=Lachancea fermentati TaxI... [more]
W0TFM4_KLUMD4.070e-544.44Uncharacterized transporter C4B3.13 n=1 Tax=Kluyve... [more]
A0A2P6RNE9_ROSCH5.550e-539.71Protein DETOXIFICATION n=2 Tax=Rosa chinensis TaxI... [more]
A0A1G4J2X4_9SACH5.560e-544.00LAMI_0C05688g1_1 n=1 Tax=Lachancea mirantina TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154837contigH-elongata_contig154837:1001..1228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue9.1e-09
Seed eggNOG ortholog2880.D7FMM8
KEGG koko:K03327
KEGG TC2.A.66.1
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005618,GO:0005623,GO:0005911,GO:0008150,GO:0008152,GO:0009505,GO:0009506,GO:0009636,GO:0009664,GO:0009987,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0030054,GO:0030312,GO:0042221,GO:0044464,GO:0045229,GO:0050896,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0071554,GO:0071555,GO:0071669,GO:0071840,GO:0071944,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size228
Cds size216
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.655448-UTR-H-elongata_contig154837:1000..10121622929913.655448-UTR-H-elongata_contig154837:1000..1012Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154837 1001..1012 +
1691679206.19829-UTR-H-elongata_contig154837:1000..10121691679206.19829-UTR-H-elongata_contig154837:1000..1012Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig154837 1001..1012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.6692653-CDS-H-elongata_contig154837:1012..12281622929913.6692653-CDS-H-elongata_contig154837:1012..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154837 1013..1228 +
1691679206.2127166-CDS-H-elongata_contig154837:1012..12281691679206.2127166-CDS-H-elongata_contig154837:1012..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154837 1013..1228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154837.3600.1prot_H-elongata_contig154837.3600.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154837 1013..1228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154837.3600.1

>prot_H-elongata_contig154837.3600.1 ID=prot_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MATGIDTLASQAFGAQNNRLVGVVFARGTLLTALIFFVPVTILWYYMDIV
VVTLGETVSDTTATVFYTVCT*
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mRNA from alignment at H-elongata_contig154837:1001..1228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154837.3600.1 ID=mRNA_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig154837:1001..1228+ (Himanthalia elongata Himel1 dioecious)
ATCTATTGCGGCATGGCGACGGGCATCGATACCTTGGCGTCACAGGCGTT
TGGGGCACAAAATAATCGTCTCGTGGGCGTAGTGTTCGCCAGAGGAACCC
TACTGACGGCGTTAATCTTCTTCGTGCCTGTGACCATCCTCTGGTACTAC
ATGGATATCGTGGTGGTGACACTCGGTGAGACTGTTTCTGACACAACTGC
TACAGTATTTTACACAGTGTGTACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig154837:1001..1228+

>mRNA_H-elongata_contig154837.3600.1 ID=mRNA_H-elongata_contig154837.3600.1|Name=mRNA_H-elongata_contig154837.3600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig154837:1001..1228+ (Himanthalia elongata Himel1 dioecious)
ATGGCGACGGGCATCGATACCTTGGCGTCACAGGCGTTTGGGGCACAAAA
TAATCGTCTCGTGGGCGTAGTGTTCGCCAGAGGAACCCTACTGACGGCGT
TAATCTTCTTCGTGCCTGTGACCATCCTCTGGTACTACATGGATATCGTG
GTGGTGACACTCGGTGAGACTGTTTCTGACACAACTGCTACAGTATTTTA
CACAGTGTGTACATAGATGGCGACGGGCATCGATACCTTGGCGTCACAGG
CGTTTGGGGCACAAAATAATCGTCTCGTGGGCGTAGTGTTCGCCAGAGGA
ACCCTACTGACGGCGTTAATCTTCTTCGTGCCTGTGACCATCCTCTGGTA
CTACATGGATATCGTGGTGGTGACACTCGGTGAGACTGTTTCTGACACAA
CTGCTACAGTATTTTACACAGTGTGTACATAG
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