mRNA_H-elongata_contig15475.3597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15475.3597.1
Unique NamemRNA_H-elongata_contig15475.3597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15475.3597.1 vs. uniprot
Match: D8LJB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB7_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 8.870e-64
Identity = 156/325 (48.00%), Postives = 196/325 (60.31%), Query Frame = 1 
Query:    1 NDLLGQCMMALGIHGGTQERESLCCVFKSWADKIIRTDCE--STRAKSGGRTLRPRQRPSLPSEARG------TSREAREENDRVKHSLLAICGSQIDSPSQRERLARGAEAVAARWEKRYNKQVSATEEALLAKRNAEISLREADRVLHEMRAAAAAATANEEVGKAL------------ETREGAGSGDSAEMDVVRTLDIKAVYWKKETDLRRRLQEAQRRLTEAEADGMKLRQDLEVALEAARSDRSFQPVVVCLGQVLGECLASLGLVRGAPDAEFHECLSALRDRAEEAGRGFLSVERLHVAVEGERALDAIRSLRQQI 915
            ++LL  C+  LG+ GG + RESL  V K+W++   R DC+  S R     R  R +QRPSLP EARG      T+       DR   SLLA+ G+Q+DS +  +R    AEA AARWEKRYN+Q SATE+ALL  RNA+ISLRE +RVL E RA AA A                      + +EG G   +    V  +L   AV  + E  LR+RLQ +Q +L EAE +  +LR+    A +AA  +RS QPVVV LG++L ECLAS+G+VRG PD EFH  +S LRDRAE+A  GFLSVE LH A EG RALDAIR LR Q+
Sbjct:   76 DELLVGCIAMLGVPGGVRARESLRRVLKAWSEDGDRHDCDDGSRRPTEAARPRRSKQRPSLPLEARGGTSNFTTTAAGHSATDRSS-SLLAVRGNQMDSSANNDRRLAVAEAAAARWEKRYNQQASATEKALLETRNAKISLREVERVLGEERADAARAARXXXXXXXXXXXXXXXXXXXQDEKEG-GLTSALSESVAHSLQSMAVRERCEKQLRQRLQLSQAKLAEAETEIGELRK----AAKAAEKNRSLQPVVVSLGEILKECLASMGIVRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARALDAIRDLRVQL 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15475.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJB7_ECTSI8.870e-6448.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15475contigH-elongata_contig15475:35..2840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005480.1
Exons7
Model size918
Cds size897
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15475.3597.1prot_H-elongata_contig15475.3597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15475 35..2819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.432221-CDS-H-elongata_contig15475:34..1031622929913.432221-CDS-H-elongata_contig15475:34..103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 35..103 -
1691679206.0860379-CDS-H-elongata_contig15475:34..1031691679206.0860379-CDS-H-elongata_contig15475:34..103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 35..103 -
1622929913.445635-CDS-H-elongata_contig15475:396..5221622929913.445635-CDS-H-elongata_contig15475:396..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 397..522 -
1691679206.0951624-CDS-H-elongata_contig15475:396..5221691679206.0951624-CDS-H-elongata_contig15475:396..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 397..522 -
1622929913.4613204-CDS-H-elongata_contig15475:774..8461622929913.4613204-CDS-H-elongata_contig15475:774..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 775..846 -
1691679206.1050231-CDS-H-elongata_contig15475:774..8461691679206.1050231-CDS-H-elongata_contig15475:774..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 775..846 -
1622929913.471332-CDS-H-elongata_contig15475:1302..14141622929913.471332-CDS-H-elongata_contig15475:1302..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 1303..1414 -
1691679206.1148329-CDS-H-elongata_contig15475:1302..14141691679206.1148329-CDS-H-elongata_contig15475:1302..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 1303..1414 -
1622929913.4819608-CDS-H-elongata_contig15475:1617..18371622929913.4819608-CDS-H-elongata_contig15475:1617..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 1618..1837 -
1691679206.1258314-CDS-H-elongata_contig15475:1617..18371691679206.1258314-CDS-H-elongata_contig15475:1617..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 1618..1837 -
1622929913.4918694-CDS-H-elongata_contig15475:2102..22951622929913.4918694-CDS-H-elongata_contig15475:2102..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 2103..2295 -
1691679206.133933-CDS-H-elongata_contig15475:2102..22951691679206.133933-CDS-H-elongata_contig15475:2102..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 2103..2295 -
1622929913.5032475-CDS-H-elongata_contig15475:2714..28191622929913.5032475-CDS-H-elongata_contig15475:2714..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 2715..2819 -
1691679206.141926-CDS-H-elongata_contig15475:2714..28191691679206.141926-CDS-H-elongata_contig15475:2714..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15475 2715..2819 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.5165493-UTR-H-elongata_contig15475:2819..28401622929913.5165493-UTR-H-elongata_contig15475:2819..2840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15475 2820..2840 -
1691679206.1501276-UTR-H-elongata_contig15475:2819..28401691679206.1501276-UTR-H-elongata_contig15475:2819..2840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15475 2820..2840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15475.3597.1

>prot_H-elongata_contig15475.3597.1 ID=prot_H-elongata_contig15475.3597.1|Name=mRNA_H-elongata_contig15475.3597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=299bp
MMALGIHGGTQERESLCCVFKSWADKIIRTDCESTRAKSGGRTLRPRQRP
SLPSEARGTSREAREENDRVKHSLLAICGSQIDSPSQRERLARGAEAVAA
RWEKRYNKQVSATEEALLAKRNAEISLREADRVLHEMRAAAAAATANEEV
GKALETREGAGSGDSAEMDVVRTLDIKAVYWKKETDLRRRLQEAQRRLTE
AEADGMKLRQDLEVALEAARSDRSFQPVVVCLGQVLGECLASLGLVRGAP
DAEFHECLSALRDRAEEAGRGFLSVERLHVAVEGERALDAIRSLRQQIR
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mRNA from alignment at H-elongata_contig15475:35..2840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15475.3597.1 ID=mRNA_H-elongata_contig15475.3597.1|Name=mRNA_H-elongata_contig15475.3597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2806bp|location=Sequence derived from alignment at H-elongata_contig15475:35..2840- (Himanthalia elongata Himel1 dioecious)
AACGACCTTCTTGGCCAATGTATGATGGCGCTAGGAATTCACGGAGGGAC
ACAGGAGAGGGAAAGCTTGTGTTGCGTCTTTAAGTCTTGGGCGGATAAAA
TTATACGAACAGATTGCGAATCGACGGTGAGAGCTCTTGTGGCGGTAAAC
TTTCCGTTATCTTACACTCCCTAGTTAAGTGCGTGTTGCAAGGCATTACA
GTCCCGCAGACGTTCCCATATACCGCCCACCTTTGACTCATTCCCAGTGT
TTATGTTGGGTAATGTTTGTGCTGCTGCAACAATTGGGAGGCAGCTCACG
CTCCACGCCTGATTGAGAGCAAGGAGGTAGCTCTTCTCCACTCCCTAAAT
TACCTCTTGGAACGCGGAGCTTTACACGTCTGAATAAAAAATGTAGTGTC
GATCGACACAAACTTGCGGCTCTTCGATATGGTTACAGCCTGTCCCTTCT
AGGTACATGAGTTACCATGAGGGACAACCGAATAATAATTAATCAATCAC
ATCAATCGTGAGAAAATGTCGCGTCGGACCTGAACGCGTTCGCAGAGAGC
GAAGTCGGGTGGGAGGACATTGCGACCACGGCAGCGGCCATCGCTACCAT
CGGAAGCAAGGGGAACTTCGAGAGAAGCCAGGGAGGAGAATGATAGAGTC
AAACACTCCCTGCTTGCCATCTGTGGCAGTCAGATCGATTCGCCTTCACA
GAGAGAGCGATTGGCAAGGGGAGCCGAGGCGGTTGCAGGTCGTCGTGATC
TATGGAAGCACCATGGGTATATTAATTAAAATATATTTGCTCATTACTAA
GCAAGCGGCCCGGTGCGTGATCGGTGCGAGGGATCATTCGATGGTCACTG
ATCAATCTATTTCGCTCAAAATCGATTGACCACGCATGAAGTTATCTAAA
CTGGCACTCGGAGCCAAGGACTTCGCTCAAACTCAAACCATGGAACATAT
GGCTGCCTCTTCCGCTTTGCTGTCGCGCGCCAAAAACACGCATGTCCTGG
CAGCCAGATGGGAAAAGCGGTACAACAAGCAGGTATCGGCCACCGAAGAG
GCTCTGTTAGCCAAGCGTAATGCCGAGATTTCTTTACGGGAGGCGGACAG
AGTGCTGCATGAAATGCGCGCGGCGGCGGCGGCGGCTACCGCAAACGAGG
AAGTCGGAAAAGCCTTGGAAACTCGAGAGGGCGCTGGTAGCGGAGATAGC
GCTGAGATGGATGTGGTGCGGACGTGAGTCGTCCCACGCCTCATCAGCAG
GAAGAATGTACCCGTCAAGCGTCCTTGTTGCAAGGCTGGAGAAAGTCGGT
ATAATGGGTCCGTAGATGTGTATATTGTTATGTATAGCATCGATCGCTAT
CTCTAGTGTGGGTCCTTTGTTCTATGTCACGTCGCAGTGATCAGGTGTCG
TGTTGGTCCTCGTTTTAGTACCGCAGGCTTGATATCAAAGCAGTTTATTG
GAAGAAAGAGACGGACCTCCGCCGTCGTCTACAGGAGGCGCAGAGAAGAC
TCACCGAGGCGGAGGCGGATGGCATGAAACTACGCCAGGTGCATCTTAGG
AAGTGTCTCGTGCACTAGCTGCACTCCGCCGGGGGCGGATGAGCGGAGTT
TGCGACTGAGATGTCGCCCGCGAAAATCTCCCCGTCATGCACGGCCTAAT
TAGCATAGAAAGTGAAGAGATAACTCCCATCGAGGAAAACGTGAACTCAG
GCTCCACGATTTGGCACGAAACATGCAAATGGAATGTGTGGACAAGTAGT
GCCCTCTATGGTACCCCCCCCCCCAAACACACACGATTCAACTCCGTGGA
AAATTACACGGATCCCGATATGTGAACAAAAAATCACGACGGCACCGTAC
GTCGCTCACCCCCCTCCTTCCGCTGGTAAAGGCTCACGTCAGCCTTCCCC
AGCGTTCCTTTCGCCCGCGAGAGACGTACGCTTTTTTTTCTTCTTCACGC
TCTCGTGTCCCGAACGCGCTCGACCTACGTTCTGGGTCGAGCAGGATCTG
GAAGTGGCTCTGGAGGCGGCACGCAGCGACAGATCATTTCAGCCCGTCGT
TGTTTGCCTCGGACAAGTGAGCGCGCTCTTGCCGTCCCACCGCTTCAAGG
CGTGTACTGTTTCAGTCGAAAACAAGAACCCAAAAATGACGGAGAAGCTG
GGTCCCGTCACGAAGTTATTCGCTTCCCCTACGGTGTAATCGTTCCGCGA
GCGATGTCTAACCGGGCGTCCGACGCTCTGGCGTTTCGTGAAGTAGATAT
AGGCTCCGATATATTATCTTAAAAAGAGGGATTGCATATAAGCGTCCAGT
CTGGCGTCTCGCGTGCAGGTGCTAGGCGAATGCCTGGCAAGCCTAGGGTT
GGTGCGTGGGGCACCCGACGCAGAATTTCACGAATGCTTGTCGGCATTAC
GAGATAGGGCAGAGGAGGCTGGGCGGGGTTTTTTGTCGGTCGAGGTGCGA
ACGGGTCAGGCTAAAAATAGGTCAGAGACGTCTTTGTAGCGCTGCTATAA
AATGAACACACATTGTGCGAAGTCCGGCCTATCCTGGGGAAAAGTGCAGG
CCTTTAGTGTCCAAATTGTGTTTGAGCCCGACATATGCCGACAGAAAACA
TGTCCACTTGTGTGTAGGGTCCCCCCCTCCTCCCCTTTCTGGGGTACCCC
GGTCCAAAAAACGTTGGAATATGGAATGACGGCATGATAAGCGTCTCTCA
TACCCCCCCCCCCTATATCACCTTTATCTATTCCTAGAGACTCCATGTCG
CCGTGGAGGGCGAAAGGGCGTTGGACGCCATCCGATCCCTCAGGCAACAG
ATCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig15475:35..2840-

>mRNA_H-elongata_contig15475.3597.1 ID=mRNA_H-elongata_contig15475.3597.1|Name=mRNA_H-elongata_contig15475.3597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1794bp|location=Sequence derived from alignment at H-elongata_contig15475:35..2840- (Himanthalia elongata Himel1 dioecious)
ATGATGGCGCTAGGAATTCACGGAGGGACACAGGAGAGGGAAAGCTTGTG
TTGCGTCTTTAAGTCTTGGGCGGATAAAATTATACGAACAGATTGCGAAT
CGACGATGATGGCGCTAGGAATTCACGGAGGGACACAGGAGAGGGAAAGC
TTGTGTTGCGTCTTTAAGTCTTGGGCGGATAAAATTATACGAACAGATTG
CGAATCGACGAGAGCGAAGTCGGGTGGGAGGACATTGCGACCACGGCAGC
GGCCATCGCTACCATCGGAAGCAAGGGGAACTTCGAGAGAAGCCAGGGAG
GAGAATGATAGAGTCAAACACTCCCTGCTTGCCATCTGTGGCAGTCAGAT
CGATTCGCCTTCACAGAGAGAGCGATTGGCAAGGGGAGCCGAGGCGGTTG
CAGAGAGCGAAGTCGGGTGGGAGGACATTGCGACCACGGCAGCGGCCATC
GCTACCATCGGAAGCAAGGGGAACTTCGAGAGAAGCCAGGGAGGAGAATG
ATAGAGTCAAACACTCCCTGCTTGCCATCTGTGGCAGTCAGATCGATTCG
CCTTCACAGAGAGAGCGATTGGCAAGGGGAGCCGAGGCGGTTGCAGCCAG
ATGGGAAAAGCGGTACAACAAGCAGGTATCGGCCACCGAAGAGGCTCTGT
TAGCCAAGCGTAATGCCGAGATTTCTTTACGGGAGGCGGACAGAGTGCTG
CATGAAATGCGCGCGGCGGCGGCGGCGGCTACCGCAAACGAGGAAGTCGG
AAAAGCCTTGGAAACTCGAGAGGGCGCTGGTAGCGGAGATAGCGCTGAGA
TGGATGTGGTGCGGACCCAGATGGGAAAAGCGGTACAACAAGCAGGTATC
GGCCACCGAAGAGGCTCTGTTAGCCAAGCGTAATGCCGAGATTTCTTTAC
GGGAGGCGGACAGAGTGCTGCATGAAATGCGCGCGGCGGCGGCGGCGGCT
ACCGCAAACGAGGAAGTCGGAAAAGCCTTGGAAACTCGAGAGGGCGCTGG
TAGCGGAGATAGCGCTGAGATGGATGTGGTGCGGACGCTTGATATCAAAG
CAGTTTATTGGAAGAAAGAGACGGACCTCCGCCGTCGTCTACAGGAGGCG
CAGAGAAGACTCACCGAGGCGGAGGCGGATGGCATGAAACTACGCCAGGC
TTGATATCAAAGCAGTTTATTGGAAGAAAGAGACGGACCTCCGCCGTCGT
CTACAGGAGGCGCAGAGAAGACTCACCGAGGCGGAGGCGGATGGCATGAA
ACTACGCCAGGATCTGGAAGTGGCTCTGGAGGCGGCACGCAGCGACAGAT
CATTTCAGCCCGTCGTTGTTTGCCTCGGACAAGATCTGGAAGTGGCTCTG
GAGGCGGCACGCAGCGACAGATCATTTCAGCCCGTCGTTGTTTGCCTCGG
ACAAGTGCTAGGCGAATGCCTGGCAAGCCTAGGGTTGGTGCGTGGGGCAC
CCGACGCAGAATTTCACGAATGCTTGTCGGCATTACGAGATAGGGCAGAG
GAGGCTGGGCGGGGTTTTTTGTCGGTCGAGGTGCTAGGCGAATGCCTGGC
AAGCCTAGGGTTGGTGCGTGGGGCACCCGACGCAGAATTTCACGAATGCT
TGTCGGCATTACGAGATAGGGCAGAGGAGGCTGGGCGGGGTTTTTTGTCG
GTCGAGAGACTCCATGTCGCCGTGGAGGGCGAAAGGGCGTTGGACGCCAT
CCGATCCCTCAGGCAACAGATCCGCAGACTCCATGTCGCCGTGGAGGGCG
AAAGGGCGTTGGACGCCATCCGATCCCTCAGGCAACAGATCCGC
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