prot_H-elongata_contig15475.3597.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15475.3597.1
Unique Nameprot_H-elongata_contig15475.3597.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length299
Homology
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BLAST of mRNA_H-elongata_contig15475.3597.1 vs. uniprot
Match: D8LJB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB7_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 5.770e-62
Identity = 153/315 (48.57%), Postives = 190/315 (60.32%), Query Frame = 0 
Query:    4 LGIHGGTQERESLCCVFKSWADKIIRTDCE--STRAKSGGRTLRPRQRPSLPSEARG------TSREAREENDRVKHSLLAICGSQIDSPSQRERLARGAEAVAARWEKRYNKQVSATEEALLAKRNAEISLREADRVLHEMRAAAAAATANEEVGKAL------------ETREGAGSGDSAEMDVVRTLDIKAVYWKKETDLRRRLQEAQRRLTEAEADGMKLRQDLEVALEAARSDRSFQPVVVCLGQVLGECLASLGLVRGAPDAEFHECLSALRDRAEEAGRGFLSVERLHVAVEGERALDAIRSLRQQI 298
            LG+ GG + RESL  V K+W++   R DC+  S R     R  R +QRPSLP EARG      T+       DR   SLLA+ G+Q+DS +  +R    AEA AARWEKRYN+Q SATE+ALL  RNA+ISLRE +RVL E RA AA A                      + +EG G   +    V  +L   AV  + E  LR+RLQ +Q +L EAE +  +LR+    A +AA  +RS QPVVV LG++L ECLAS+G+VRG PD EFH  +S LRDRAE+A  GFLSVE LH A EG RALDAIR LR Q+
Sbjct:   86 LGVPGGVRARESLRRVLKAWSEDGDRHDCDDGSRRPTEAARPRRSKQRPSLPLEARGGTSNFTTTAAGHSATDRSS-SLLAVRGNQMDSSANNDRRLAVAEAAAARWEKRYNQQASATEKALLETRNAKISLREVERVLGEERADAARAARXXXXXXXXXXXXXXXXXXXQDEKEG-GLTSALSESVAHSLQSMAVRERCEKQLRQRLQLSQAKLAEAETEIGELRK----AAKAAEKNRSLQPVVVSLGEILKECLASMGIVRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARALDAIRDLRVQL 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15475.3597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJB7_ECTSI5.770e-6248.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15475contigH-elongata_contig15475:35..2819 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15475.3597.1mRNA_H-elongata_contig15475.3597.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15475 35..2840 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15475.3597.1 ID=prot_H-elongata_contig15475.3597.1|Name=mRNA_H-elongata_contig15475.3597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=299bp
MMALGIHGGTQERESLCCVFKSWADKIIRTDCESTRAKSGGRTLRPRQRP
SLPSEARGTSREAREENDRVKHSLLAICGSQIDSPSQRERLARGAEAVAA
RWEKRYNKQVSATEEALLAKRNAEISLREADRVLHEMRAAAAAATANEEV
GKALETREGAGSGDSAEMDVVRTLDIKAVYWKKETDLRRRLQEAQRRLTE
AEADGMKLRQDLEVALEAARSDRSFQPVVVCLGQVLGECLASLGLVRGAP
DAEFHECLSALRDRAEEAGRGFLSVERLHVAVEGERALDAIRSLRQQIR
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