mRNA_H-elongata_contig154122.3569.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3YME3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YME3_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.740e-8 Identity = 65/293 (22.18%), Postives = 117/293 (39.93%), Query Frame = 1
Query: 7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITVNRGKGGDRRHRPKFNRK----------CFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGST-LPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
+ ++ + A DAW LE +R + L + + + ++E+ L + R + E C ++ L YE + + AD+ ++L+ ++ KD + + + GKG ++ K N++ CF+CGK GHYAR+C+ S D + + A G E W DSGA+ HM R S Y ++ A S L V G+G + + V H+ +++N ++ +++NL S+ E
Sbjct: 1 MHVIDAATA-KDAWAKLENFHRTQDMANRLWLKEKF-ASFKYTASSIKDHVMELETLVLKM-RNANCGPNEEDVCATMLRSLPASYESLVQAFRMSTTTFSLADL-------VSKLIAEEVRQKDSTHIEEVTALLAGKGNGKQQNSKKNQRGGRKKGPAGACFTCGKKGHYARDCKMDSHSRGADQDQ-----SNVAFNATEGFASESWVMDSGASAHMCKSRGAFSEYTAVKNGRSVLSAKTSADLKVLGYGTVTLRV-WTGHSWINARLENTLHVQDLNKNLFSLTAVTE 277
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3JYB2_9STRA (CCHC-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JYB2_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.130e-7 Identity = 72/276 (26.09%), Postives = 119/276 (43.12%), Query Frame = 1
Query: 43 AWRNL-ETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSAS------KGHITVNRGK---GGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMD-VDQPSHTTKRVKMDNVAYMPGISRNLLSI 837
AW L + +YR + H K ME G + L L LG+ + E ++ VI+++ LST+YE+ C I+EN+ + +++ + ++ RL +++ + + + KG T GK G R F KCF+CG+ GH R+C D G +D+ A HM R + YK + + IADG + V G G + + +D R++M +V Y+PG++R LLS+
Sbjct: 59 AWNTLCDFYYRTTMHNRVTMTRHLHEFK-MEDGXXXXXXXDKFNELIVGLQTLGEP-LDEARQLVILLTNLSTEYELICSIVENS-MDFMLVEVKEKLLKEFERLDKKEGTERALKVTANGSKIKGAKTFKGGKDSKGYSVRKHGGFKGKCFNCGQMGHMKRDC--------PDPNTG---------------------NDNDAA-HMTPRRNDLFEYKDLDSNVEVAIADGMEVLVVGTGSVCLTGIDG-----NRIEMIDVLYIPGLNRQLLSV 296
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A4Y2E814_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2E814_ARAVE) HSP 1 Score: 62.4 bits (150), Expect = 3.280e-7 Identity = 79/301 (26.25%), Postives = 128/301 (42.52%), Query Frame = 1
Query: 7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNP---VGLDRADIERVVGNQY---------NRLLRQQQDSKDMSASKGHITVN--RGKGGDRRHRPKFNR----KCFSCGKGGHYARNC---RASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGST-LPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILK 843
L +Q+ + W+ L + Y AKG+ + + + + EI +L DL R+ V +I I+ L +YE LEN P + LD +R++ ++ ++ D+ +A + N KG H KF R KCFSCGK GHY R+C + + +SGA + I AA ++++ DSGAT HM + S+ + AS I+ A S L V+G G I ++ + + +V Y+P ++ LLS+ K
Sbjct: 68 LSSLQKEDTAFKIWKALISTYEAKGAVNQILTRKRLATIRKSKETSMRQHIDEILKLVSDL-RVSGSEVSDIDSIAYILMSLPKEYESVKVALENQPNVNLTLDFVITQRLIDSEALMNDSKFVDKSSIKYPTDNVTFAAKYKKLISNFCSKKG----HTSKFCRLKTSKCFSCGKAGHYKRDCPVSKTAADSGARHSAY-------EITFAAGTLNEDKFIIDSGATSHMCSRKEWFSSLEPASG--IIKCASKSAVLQVEGIGIIRGEISN----NVNLNLKDVLYVPNLNGQLLSVQK 350
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A0J7N4R7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N4R7_LASNI) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-6 Identity = 66/285 (23.16%), Postives = 130/285 (45.61%), Query Frame = 1
Query: 16 VQRSNAPNDAWRNLETHYRAKG-SREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITV---NRGKGGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEE--WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
+Q + P W N+ + +G +R++ + + K+ E E++ +I A L +G ++ E +++SGL +Y+ EN+ + + D +V +LL++ + K++ + N+G G +R K +KCF+CGK GH+A C+A + + R + + T + A G + +E W DS A+ HM + + + + ++ A+ L G + + V T+ V ++ + Y+P ++ NLLS+ K E
Sbjct: 70 IQETITPKATWDNIVETFEDRGLTRKVGLLKSLTSAKLTECKSVE-EYVNKITNAAHQLKEIGI-TIEEEMIGALLLSGLPNEYKPMIIGFENSGIAIT-GDTIKV------KLLQEIKSVKEIKTETEETALYSKNKGYG----NRDKIVKKCFTCGKTGHFAAKCKAKIKQKRNEERS---TQQKTFLTLATGEQMKETGWYLDSCASTHMTRRKDWLKDVRTYNA--SVLAANNQKLKALKKGTVTISVTN-GRDTENVAVEEILYVPELAANLLSVSKITE 335
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3L6P0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L6P0_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.390e-6 Identity = 66/247 (26.72%), Postives = 110/247 (44.53%), Query Frame = 1
Query: 127 MEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSAS------KGHITVNRGK---GGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMD-VDQPSHTTKRVKMDNVAYMPGISRNLLSI 837
ME G + + + L L LG+ + E ++ VI+++ LST+YE+ C I+EN+ + +++ + ++ RL +++ + + + KG T GK G R F KCF+CG+ GH R+C D G +D+ A HM R + YK + + IADG + V G G + + +D R+KM +V Y+PG+ R LLS+
Sbjct: 88 MEDGVTMAKHLDKFNELIVGLQTLGEP-LDEARQLVILLTNLSTEYELICSIVENS-MDFMLIEVKEKLLKEFERLDKKEGTERALKVTANGSKIKGAKTFKGGKDSKGYSVRKHGGFKGKCFNCGQMGHMKRDC--------PDPNTG---------------------NDNDAA-HMTPRRNDLFEYKDLDSNVEVIIADGKEVLVVGTGSVCLTGIDG-----NRIKMIDVLYIPGLDRQLLSV 297
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A1R3K8M3_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3K8M3_COCAP) HSP 1 Score: 60.5 bits (145), Expect = 1.420e-6 Identity = 79/345 (22.90%), Postives = 143/345 (41.45%), Query Frame = 1
Query: 7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVI-EIKKCVIIVSGLSTDY------------EMECRILEN---NPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITVNRGKGG------------------DRRHRPKFNRKCFSCGKGGHYARNCRASGESG--ATDNRKGGGSCKS------------TIVRAACGGRKEE---------------WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
L ++ + P +AW L T K ++ ++ +E+ I + E+ ++ L +++++L ++ I E + II+ GL +Y E LEN N LD+ + + + L ++ + + +S+ RG+ G ++RHR + N KC+SCGK GH+AR+CR G AT +R G S + + AC +E+ W DSG + HM + +S + + A+ S LP+ G+ V P +V++DNV ++ G+ +NLLS+ + +
Sbjct: 79 LHHIKDARTPREAWDTLTTLLAKKNDAKLQQLENELLS-ISQQNISVSEYFSKVKLLCNEISKLDPENAITETRMRRIIIHGLRPEYHGIVTATRGWEKEPTLTELENILVNQETLDKQISKVSIKDDEKALFIKKGVANEGESSRSRQNWRRGQRGRRPQRGGAQPVRDKDDNEEKRHR-RQNDKCYSCGKVGHFARDCRFKQAQGNAATTSRGGIDSEEDWDFQVSFAVEEPEELATACTVEQEQETALSTVSKINFNNDWLVDSGCSNHMTGDKEKLSNTSTYAGKRMVVTANNSKLPITHIGKT---VIVPKSGQHQVQLDNVFHVSGMKKNLLSVAQLTD 418
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A0K8UDK8_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8UDK8_BACLA) HSP 1 Score: 59.7 bits (143), Expect = 2.350e-6 Identity = 62/288 (21.53%), Postives = 130/288 (45.14%), Query Frame = 1
Query: 16 VQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLL----RQQQDSKDMSASKGHITVNRGKGGDRRHRPKFNR--KCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACG---GRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
+++ + +AW+ LET Y+A G + + ++ ME D +++ + +AD L + D ++ + ++++S L ++ N V ++ D ++++ R++ +S + S + VN + + K NR KC++CG+ GH+A C+A + G + KS + AA EW DSGAT HM R + +++ +T+ A + + +G G + + ++ V + + Y+P + N +S+ K ++
Sbjct: 74 IRKCKSSLEAWKALETLYKATGPVRKVSLYRKLINMKMEENDDILKYLNDFSNVADKLAEM-DIALPDEVLVIMLLSNLPKSFD-------NFVVAMETRDNLPSFSFVNSKIIEEGERKRGESGESSGIHVYAQVNASRNNNN---SKGNRELKCYACGRPGHFASKCKAKKKHGDREQ-------KSYTMLAATNISFFNSSEWCVDSGATAHMCSDRKMFTKFQERRERVTL--AGSNYMYAEGIGEVLLTTNEGD-----VLLIDALYVPELGGNFISVSKIIQ 336
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA) HSP 1 Score: 58.5 bits (140), Expect = 4.550e-6 Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 1
Query: 463 CFSCGKGGHYARNCR---ASGESGATDNRKGGGS---CKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKA 846
C C K GH+ R CR A G+ K G S +S I A+ +W D+GAT H+ R Y+ + +I+ A L +G G IE + ++++++V Y+PGISRNL S+L A
Sbjct: 243 CHYCKKKGHWLRECRKWLADGKPSRFQKGKIGFSNVALQSIIDEASSVSTDIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A5N6M1Q3_9ASTR (CCHC-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Q3_9ASTR) HSP 1 Score: 57.8 bits (138), Expect = 5.280e-6 Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 1
Query: 463 CFSCGKGGHYARNCRA------SGESGATDNRKGGGS----------CKSTIVRAACGGRKEE--WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLS 834
C+ CGK GH+ ++CR +G SG+ D K G +++ AC + ++ W DSGAT H+ ++ I++ + +T P+ G G++++ + K + +DNV Y+PGI +NLLS
Sbjct: 52 CWKCGKVGHFKKDCRVGKHNKEAGPSGSKDPNKQQGQNLVXXXXXXXXXXSLISEACYVQDDDIAWWVDSGATSHVCKDLRWFKDFQPIEDGSVIKMGNVATEPIKGLGKVKLVFT----SGKCLCLDNVLYVPGIRKNLLS 189
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7) HSP 1 Score: 58.5 bits (140), Expect = 6.180e-6 Identity = 67/286 (23.43%), Postives = 122/286 (42.66%), Query Frame = 1
Query: 46 WRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQD---SKDMSASKGHITV-NRGKGGDR---------------RHRPKFNRKCFSCGKGGHYARNC----RASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLS 834
W+ LE Y+ K + + G ME E M +L DL L D + E + + I++ L YE L+ G + + V + Y++ + ++ +K S+G NRG+G + + RPKF+++C++CGK GH+ + C + S + ++ + ++ A+ K+EW DSG TFH+ + + + + + + + + G G+I + D S V + +V YMP + RNL+S
Sbjct: 95 WKALEAEYQTKTLPNRIYMKQRYAGFRMEEHKSIEENMDVFLKLVADLASL-DIKISEEDQAIQILTSLPKQYESLVDALKYGS-GKEILTVRDVTSSAYSKEVELREKGLLNKSKGNSEGLFAGDNRGRGEKKSDKTWRARSKSNNRSKSRPKFSKECWTCGKEGHFKKQCPERKKPSNSVNIAEEKE-----EPLVLVASQQATKDEWVLDSGCTFHITPNKDVLFDLEDIEGGKVL-MGNNTISEIKGIGKIRIMNDDGSS----VILTDVRYMPTMGRNLIS 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig154122.3569.1 >prot_H-elongata_contig154122.3569.1 ID=prot_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp MALEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFback to top mRNA from alignment at H-elongata_contig154122:481..1494- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig154122.3569.1 ID=mRNA_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-elongata_contig154122:481..1494- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig154122:481..1494- >mRNA_H-elongata_contig154122.3569.1 ID=mRNA_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig154122:481..1494- (Himanthalia elongata Himel1 dioecious)back to top |