mRNA_H-elongata_contig154122.3569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154122.3569.1
Unique NamemRNA_H-elongata_contig154122.3569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3YME3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YME3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.740e-8
Identity = 65/293 (22.18%), Postives = 117/293 (39.93%), Query Frame = 1
Query:    7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITVNRGKGGDRRHRPKFNRK----------CFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGST-LPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
            + ++  + A  DAW  LE  +R +     L +  +             + ++E+  L   + R  +    E   C  ++  L   YE   +    +      AD+        ++L+ ++   KD +  +    +  GKG  ++   K N++          CF+CGK GHYAR+C+    S   D  +      +    A  G   E W  DSGA+ HM   R   S Y       ++  A  S  L V G+G + + V    H+    +++N  ++  +++NL S+    E
Sbjct:    1 MHVIDAATA-KDAWAKLENFHRTQDMANRLWLKEKF-ASFKYTASSIKDHVMELETLVLKM-RNANCGPNEEDVCATMLRSLPASYESLVQAFRMSTTTFSLADL-------VSKLIAEEVRQKDSTHIEEVTALLAGKGNGKQQNSKKNQRGGRKKGPAGACFTCGKKGHYARDCKMDSHSRGADQDQ-----SNVAFNATEGFASESWVMDSGASAHMCKSRGAFSEYTAVKNGRSVLSAKTSADLKVLGYGTVTLRV-WTGHSWINARLENTLHVQDLNKNLFSLTAVTE 277          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3JYB2_9STRA (CCHC-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JYB2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.130e-7
Identity = 72/276 (26.09%), Postives = 119/276 (43.12%), Query Frame = 1
Query:   43 AWRNL-ETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSAS------KGHITVNRGK---GGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMD-VDQPSHTTKRVKMDNVAYMPGISRNLLSI 837
            AW  L + +YR      +    H    K ME G        +   L   L  LG+  + E ++ VI+++ LST+YE+ C I+EN+ +     +++  +  ++ RL +++   + +  +      KG  T   GK   G   R    F  KCF+CG+ GH  R+C         D   G                     +D+ A  HM   R  +  YK     + + IADG  + V G G + +  +D       R++M +V Y+PG++R LLS+
Sbjct:   59 AWNTLCDFYYRTTMHNRVTMTRHLHEFK-MEDGXXXXXXXDKFNELIVGLQTLGEP-LDEARQLVILLTNLSTEYELICSIVENS-MDFMLVEVKEKLLKEFERLDKKEGTERALKVTANGSKIKGAKTFKGGKDSKGYSVRKHGGFKGKCFNCGQMGHMKRDC--------PDPNTG---------------------NDNDAA-HMTPRRNDLFEYKDLDSNVEVAIADGMEVLVVGTGSVCLTGIDG-----NRIEMIDVLYIPGLNRQLLSV 296          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A4Y2E814_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2E814_ARAVE)

HSP 1 Score: 62.4 bits (150), Expect = 3.280e-7
Identity = 79/301 (26.25%), Postives = 128/301 (42.52%), Query Frame = 1
Query:    7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNP---VGLDRADIERVVGNQY---------NRLLRQQQDSKDMSASKGHITVN--RGKGGDRRHRPKFNR----KCFSCGKGGHYARNC---RASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGST-LPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILK 843
            L  +Q+ +     W+ L + Y AKG+   +     +            + + EI +L  DL R+    V +I     I+  L  +YE     LEN P   + LD    +R++ ++             ++   D+   +A    +  N    KG    H  KF R    KCFSCGK GHY R+C   + + +SGA  +          I  AA    ++++  DSGAT HM   +   S+ + AS    I+ A  S  L V+G G I  ++         + + +V Y+P ++  LLS+ K
Sbjct:   68 LSSLQKEDTAFKIWKALISTYEAKGAVNQILTRKRLATIRKSKETSMRQHIDEILKLVSDL-RVSGSEVSDIDSIAYILMSLPKEYESVKVALENQPNVNLTLDFVITQRLIDSEALMNDSKFVDKSSIKYPTDNVTFAAKYKKLISNFCSKKG----HTSKFCRLKTSKCFSCGKAGHYKRDCPVSKTAADSGARHSAY-------EITFAAGTLNEDKFIIDSGATSHMCSRKEWFSSLEPASG--IIKCASKSAVLQVEGIGIIRGEISN----NVNLNLKDVLYVPNLNGQLLSVQK 350          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A0J7N4R7_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N4R7_LASNI)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-6
Identity = 66/285 (23.16%), Postives = 130/285 (45.61%), Query Frame = 1
Query:   16 VQRSNAPNDAWRNLETHYRAKG-SREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITV---NRGKGGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEE--WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
            +Q +  P   W N+   +  +G +R++  +    + K+ E      E++ +I   A  L  +G  ++ E     +++SGL  +Y+      EN+ + +   D  +V      +LL++ +  K++        +   N+G G    +R K  +KCF+CGK GH+A  C+A  +    + R    + + T +  A G + +E  W  DS A+ HM   +  +   +  +   ++  A+   L     G + + V      T+ V ++ + Y+P ++ NLLS+ K  E
Sbjct:   70 IQETITPKATWDNIVETFEDRGLTRKVGLLKSLTSAKLTECKSVE-EYVNKITNAAHQLKEIGI-TIEEEMIGALLLSGLPNEYKPMIIGFENSGIAIT-GDTIKV------KLLQEIKSVKEIKTETEETALYSKNKGYG----NRDKIVKKCFTCGKTGHFAAKCKAKIKQKRNEERS---TQQKTFLTLATGEQMKETGWYLDSCASTHMTRRKDWLKDVRTYNA--SVLAANNQKLKALKKGTVTISVTN-GRDTENVAVEEILYVPELAANLLSVSKITE 335          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A6A3L6P0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L6P0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-6
Identity = 66/247 (26.72%), Postives = 110/247 (44.53%), Query Frame = 1
Query:  127 MEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQDSKDMSAS------KGHITVNRGK---GGDRRHRPKFNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMD-VDQPSHTTKRVKMDNVAYMPGISRNLLSI 837
            ME G    + + +   L   L  LG+  + E ++ VI+++ LST+YE+ C I+EN+ +     +++  +  ++ RL +++   + +  +      KG  T   GK   G   R    F  KCF+CG+ GH  R+C         D   G                     +D+ A  HM   R  +  YK     + + IADG  + V G G + +  +D       R+KM +V Y+PG+ R LLS+
Sbjct:   88 MEDGVTMAKHLDKFNELIVGLQTLGEP-LDEARQLVILLTNLSTEYELICSIVENS-MDFMLIEVKEKLLKEFERLDKKEGTERALKVTANGSKIKGAKTFKGGKDSKGYSVRKHGGFKGKCFNCGQMGHMKRDC--------PDPNTG---------------------NDNDAA-HMTPRRNDLFEYKDLDSNVEVIIADGKEVLVVGTGSVCLTGIDG-----NRIKMIDVLYIPGLDRQLLSV 297          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A1R3K8M3_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3K8M3_COCAP)

HSP 1 Score: 60.5 bits (145), Expect = 1.420e-6
Identity = 79/345 (22.90%), Postives = 143/345 (41.45%), Query Frame = 1
Query:    7 LEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVI-EIKKCVIIVSGLSTDY------------EMECRILEN---NPVGLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITVNRGKGG------------------DRRHRPKFNRKCFSCGKGGHYARNCRASGESG--ATDNRKGGGSCKS------------TIVRAACGGRKEE---------------WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
            L  ++ +  P +AW  L T    K   ++ ++ +E+   I +      E+  ++  L +++++L  ++ I E +   II+ GL  +Y            E     LEN   N   LD+   +  + +    L  ++  + +  +S+      RG+ G                  ++RHR + N KC+SCGK GH+AR+CR     G  AT +R G  S +               +  AC   +E+               W  DSG + HM   +  +S     +    +  A+ S LP+   G+    V  P     +V++DNV ++ G+ +NLLS+ +  +
Sbjct:   79 LHHIKDARTPREAWDTLTTLLAKKNDAKLQQLENELLS-ISQQNISVSEYFSKVKLLCNEISKLDPENAITETRMRRIIIHGLRPEYHGIVTATRGWEKEPTLTELENILVNQETLDKQISKVSIKDDEKALFIKKGVANEGESSRSRQNWRRGQRGRRPQRGGAQPVRDKDDNEEKRHR-RQNDKCYSCGKVGHFARDCRFKQAQGNAATTSRGGIDSEEDWDFQVSFAVEEPEELATACTVEQEQETALSTVSKINFNNDWLVDSGCSNHMTGDKEKLSNTSTYAGKRMVVTANNSKLPITHIGKT---VIVPKSGQHQVQLDNVFHVSGMKKNLLSVAQLTD 418          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A0K8UDK8_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8UDK8_BACLA)

HSP 1 Score: 59.7 bits (143), Expect = 2.350e-6
Identity = 62/288 (21.53%), Postives = 130/288 (45.14%), Query Frame = 1
Query:   16 VQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLL----RQQQDSKDMSASKGHITVNRGKGGDRRHRPKFNR--KCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACG---GRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE 852
            +++  +  +AW+ LET Y+A G    + +  ++    ME   D  +++ +   +AD L  + D ++ +    ++++S L   ++       N  V ++  D         ++++    R++ +S + S    +  VN  +  +     K NR  KC++CG+ GH+A  C+A  + G  +        KS  + AA         EW  DSGAT HM   R   + +++    +T+  A  + +  +G G + +  ++       V + +  Y+P +  N +S+ K ++
Sbjct:   74 IRKCKSSLEAWKALETLYKATGPVRKVSLYRKLINMKMEENDDILKYLNDFSNVADKLAEM-DIALPDEVLVIMLLSNLPKSFD-------NFVVAMETRDNLPSFSFVNSKIIEEGERKRGESGESSGIHVYAQVNASRNNNN---SKGNRELKCYACGRPGHFASKCKAKKKHGDREQ-------KSYTMLAATNISFFNSSEWCVDSGATAHMCSDRKMFTKFQERRERVTL--AGSNYMYAEGIGEVLLTTNEGD-----VLLIDALYVPELGGNFISVSKIIQ 336          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 58.5 bits (140), Expect = 4.550e-6
Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  463 CFSCGKGGHYARNCR---ASGESGATDNRKGGGS---CKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLSILKA 846
            C  C K GH+ R CR   A G+       K G S    +S I  A+      +W  D+GAT H+   R     Y+  +   +I+ A    L  +G G IE       +   ++++++V Y+PGISRNL S+L A
Sbjct:  243 CHYCKKKGHWLRECRKWLADGKPSRFQKGKIGFSNVALQSIIDEASSVSTDIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: A0A5N6M1Q3_9ASTR (CCHC-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Q3_9ASTR)

HSP 1 Score: 57.8 bits (138), Expect = 5.280e-6
Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  463 CFSCGKGGHYARNCRA------SGESGATDNRKGGGS----------CKSTIVRAACGGRKEE--WESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLS 834
            C+ CGK GH+ ++CR       +G SG+ D  K  G              +++  AC  + ++  W  DSGAT H+         ++       I++ + +T P+ G G++++       + K + +DNV Y+PGI +NLLS
Sbjct:   52 CWKCGKVGHFKKDCRVGKHNKEAGPSGSKDPNKQQGQNLVXXXXXXXXXXSLISEACYVQDDDIAWWVDSGATSHVCKDLRWFKDFQPIEDGSVIKMGNVATEPIKGLGKVKLVFT----SGKCLCLDNVLYVPGIRKNLLS 189          
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7)

HSP 1 Score: 58.5 bits (140), Expect = 6.180e-6
Identity = 67/286 (23.43%), Postives = 122/286 (42.66%), Query Frame = 1
Query:   46 WRNLETHYRAKGSREILRVSHEINGKIMEPGGDRFEFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPVGLDRADIERVVGNQYNRLLRQQQD---SKDMSASKGHITV-NRGKGGDR---------------RHRPKFNRKCFSCGKGGHYARNC----RASGESGATDNRKGGGSCKSTIVRAACGGRKEEWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMDVDQPSHTTKRVKMDNVAYMPGISRNLLS 834
            W+ LE  Y+ K     + +     G  ME      E M    +L  DL  L D  + E  + + I++ L   YE     L+    G +   +  V  + Y++ +  ++    +K    S+G     NRG+G  +               + RPKF+++C++CGK GH+ + C    + S      + ++     +  ++ A+    K+EW  DSG TFH+   +  +   +       + + + +   + G G+I +  D  S     V + +V YMP + RNL+S
Sbjct:   95 WKALEAEYQTKTLPNRIYMKQRYAGFRMEEHKSIEENMDVFLKLVADLASL-DIKISEEDQAIQILTSLPKQYESLVDALKYGS-GKEILTVRDVTSSAYSKEVELREKGLLNKSKGNSEGLFAGDNRGRGEKKSDKTWRARSKSNNRSKSRPKFSKECWTCGKEGHFKKQCPERKKPSNSVNIAEEKE-----EPLVLVASQQATKDEWVLDSGCTFHITPNKDVLFDLEDIEGGKVL-MGNNTISEIKGIGKIRIMNDDGSS----VILTDVRYMPTMGRNLIS 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154122.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6A3YME3_9STRA1.740e-822.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3JYB2_9STRA3.130e-726.09CCHC-type domain-containing protein n=3 Tax=Phytop... [more]
A0A4Y2E814_ARAVE3.280e-726.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7N4R7_LASNI1.200e-623.16Retrovirus-related pol polyprotein from transposon... [more]
A0A6A3L6P0_9STRA1.390e-626.72CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A1R3K8M3_COCAP1.420e-622.90Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A0K8UDK8_BACLA2.350e-621.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1TCT1_EUMVA4.550e-632.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6M1Q3_9ASTR5.280e-628.17CCHC-type domain-containing protein n=1 Tax=Mikani... [more]
UPI00142E31C76.180e-623.43uncharacterized protein LOC103832254 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154122contigH-elongata_contig154122:481..1494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.3
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog400682.PAC_15703055
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size855
Cds size855
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.8291526-CDS-H-elongata_contig154122:480..7731622929910.8291526-CDS-H-elongata_contig154122:480..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154122 481..773 -
1691679205.185338-CDS-H-elongata_contig154122:480..7731691679205.185338-CDS-H-elongata_contig154122:480..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154122 481..773 -
1622929910.8438742-CDS-H-elongata_contig154122:932..14941622929910.8438742-CDS-H-elongata_contig154122:932..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154122 933..1494 -
1691679205.1942205-CDS-H-elongata_contig154122:932..14941691679205.1942205-CDS-H-elongata_contig154122:932..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154122 933..1494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154122.3569.1prot_H-elongata_contig154122.3569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154122 481..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154122.3569.1

>prot_H-elongata_contig154122.3569.1 ID=prot_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MALEIVQRSNAPNDAWRNLETHYRAKGSREILRVSHEINGKIMEPGGDRF
EFMIEIYRLADDLNRLGDKSVIEIKKCVIIVSGLSTDYEMECRILENNPV
GLDRADIERVVGNQYNRLLRQQQDSKDMSASKGHITVNRGKGGDRRHRPK
FNRKCFSCGKGGHYARNCRASGESGATDNRKGGGSCKSTIVRAACGGRKE
EWESDSGATFHMLHIRAGMSAYKKASPWMTIEIADGSTLPVDGFGRIEMD
VDQPSHTTKRVKMDNVAYMPGISRNLLSILKAVE*
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mRNA from alignment at H-elongata_contig154122:481..1494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154122.3569.1 ID=mRNA_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-elongata_contig154122:481..1494- (Himanthalia elongata Himel1 dioecious)
ATGGCACTTGAAATCGTGCAACGTAGCAACGCACCGAACGACGCGTGGCG AAATCTTGAAACACACTACAGAGCGAAGGGAAGTAGAGAGATACTTCGCG TGTCCCATGAAATCAACGGGAAAATAATGGAACCAGGTGGGGACCGATTC GAATTTATGATAGAAATTTACAGGCTAGCAGATGATCTCAACCGATTGGG CGACAAATCCGTGATTGAAATAAAAAAATGCGTAATTATCGTATCTGGTC TCTCTACTGACTACGAGATGGAGTGCCGCATATTGGAAAATAACCCTGTT GGTCTTGACAGAGCTGATATTGAGCGTGTCGTAGGGAATCAGTACAACCG ACTTCTCAGGCAACAACAGGATTCAAAGGATATGTCGGCATCGAAGGGCC ACATTACGGTGAATCGCGGAAAGGGGGGGGACAGAAGACACCGCCCCAAA TTCAACCGAAAGTGTTTCAGTTGCGGAAAGGGAGGACACTACGCTCGGAA CTGCAGGGCGAGTGGGGAATCAGGGGCAACCGATAACAGGAAGGGCGGTG GCAGCTGCAAGTGTTACATCTGTGGAAGTGAGAAGCACCTTGCGTACAAG CACTGTGGGCTGTGCAAAAGCCTTGAGCGCCGGACGCGAGACTGTAAGGA GCGCGGGACTGAAAAGGGCGCAATGCTGGAAAAACTGACTGTGCCGGCAG TCCCCGAGGTGAGGACGATAGCGACAATAGTGAGAGCAGCTTGTGGCGGT AGAAAGGAGGAATGGGAATCGGACTCAGGCGCCACATTCCACATGTTGCA CATCCGGGCCGGAATGTCTGCGTACAAGAAAGCGTCGCCGTGGATGACAA TTGAGATCGCCGACGGGAGCACTCTACCGGTGGACGGGTTCGGAAGAATT GAGATGGATGTGGACCAACCGAGTCACACAACCAAGAGGGTGAAGATGGA CAATGTTGCGTATATGCCAGGAATTTCGCGGAACCTGCTATCTATCCTCA AAGCAGTGGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig154122:481..1494-

>mRNA_H-elongata_contig154122.3569.1 ID=mRNA_H-elongata_contig154122.3569.1|Name=mRNA_H-elongata_contig154122.3569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig154122:481..1494- (Himanthalia elongata Himel1 dioecious)
ATGGCACTTGAAATCGTGCAACGTAGCAACGCACCGAACGACGCGTGGCG
AAATCTTGAAACACACTACAGAGCGAAGGGAAGTAGAGAGATACTTCGCG
TGTCCCATGAAATCAACGGGAAAATAATGGAACCAGGTGGGGACCGATTC
GAATTTATGATAGAAATTTACAGGCTAGCAGATGATCTCAACCGATTGGG
CGACAAATCCGTGATTGAAATAAAAAAATGCGTAATTATCGTATCTGGTC
TCTCTACTGACTACGAGATGGAGTGCCGCATATTGGAAAATAACCCTGTT
GGTCTTGACAGAGCTGATATTGAGCGTGTCGTAGGGAATCAGTACAACCG
ACTTCTCAGGCAACAACAGGATTCAAAGGATATGTCGGCATCGAAGGGCC
ACATTACGGTGAATCGCGGAAAGGGGGGGGACAGAAGACACCGCCCCAAA
TTCAACCGAAAGTGTTTCAGTTGCGGAAAGGGAGGACACTACGCTCGGAA
CTGCAGGGCGAGTGGGGAATCAGGGGCAACCGATAACAGGAAGGGCGGTG
GCAGCTGCAAGTATGGCACTTGAAATCGTGCAACGTAGCAACGCACCGAA
CGACGCGTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAAGTAGAG
AGATACTTCGCGTGTCCCATGAAATCAACGGGAAAATAATGGAACCAGGT
GGGGACCGATTCGAATTTATGATAGAAATTTACAGGCTAGCAGATGATCT
CAACCGATTGGGCGACAAATCCGTGATTGAAATAAAAAAATGCGTAATTA
TCGTATCTGGTCTCTCTACTGACTACGAGATGGAGTGCCGCATATTGGAA
AATAACCCTGTTGGTCTTGACAGAGCTGATATTGAGCGTGTCGTAGGGAA
TCAGTACAACCGACTTCTCAGGCAACAACAGGATTCAAAGGATATGTCGG
CATCGAAGGGCCACATTACGGTGAATCGCGGAAAGGGGGGGGACAGAAGA
CACCGCCCCAAATTCAACCGAAAGTGTTTCAGTTGCGGAAAGGGAGGACA
CTACGCTCGGAACTGCAGGGCGAGTGGGGAATCAGGGGCAACCGATAACA
GGAAGGGCGGTGGCAGCTGCAAGTCGACAATAGTGAGAGCAGCTTGTGGC
GGTAGAAAGGAGGAATGGGAATCGGACTCAGGCGCCACATTCCACATGTT
GCACATCCGGGCCGGAATGTCTGCGTACAAGAAAGCGTCGCCGTGGATGA
CAATTGAGATCGCCGACGGGAGCACTCTACCGGTGGACGGGTTCGGAAGA
ATTGAGATGGATGTGGACCAACCGAGTCACACAACCAAGAGGGTGAAGAT
GGACAATGTTGCGTATATGCCAGGAATTTCGCGGAACCTGCTATCTATCC
TCAAAGCAGTGGAGTAACGACAATAGTGAGAGCAGCTTGTGGCGGTAGAA
AGGAGGAATGGGAATCGGACTCAGGCGCCACATTCCACATGTTGCACATC
CGGGCCGGAATGTCTGCGTACAAGAAAGCGTCGCCGTGGATGACAATTGA
GATCGCCGACGGGAGCACTCTACCGGTGGACGGGTTCGGAAGAATTGAGA
TGGATGTGGACCAACCGAGTCACACAACCAAGAGGGTGAAGATGGACAAT
GTTGCGTATATGCCAGGAATTTCGCGGAACCTGCTATCTATCCTCAAAGC
AGTGGAGTAA
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