mRNA_H-elongata_contig153844.3554.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: A0A6H5JDW8_9PHAE (FH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW8_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.880e-28 Identity = 69/110 (62.73%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 7 RSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRE-LPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
RSA+DSTSE VR SLLKVLTVM ETG GLK VLNALDV KA+KN DLRF LL + + E L A+ V VFLN VL+ AF+F+ERVLLRGEM+ GV+ AI R
Sbjct: 192 RSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKARKNQDLRFSLLPGIIVGGNDGEEDLRLALAVAVFLNTVLSRAFKFEERVLLRGEMVAGGVVAAIAGAR 301
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D8LCH4_ECTSI (FH2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH4_ECTSI) HSP 1 Score: 111 bits (278), Expect = 2.760e-26 Identity = 75/151 (49.67%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 7 RSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMT------------------------------------------REPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
RSA+DSTSE VR SLLKVLTVM ETG GLK VLNALDV KAQKN DLRF LLV ALS E L A+ V VFLN VL+ AFEF+ERVLLRGEM+ GV+ AI R
Sbjct: 159 RSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKAQKNQDLRFSLLVGALSKAAXXXXXXXXXXRGTQPGSGSSEEEGYGVGGTQPGIRGGGNDGEEDGHLRLALAVAVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGAR 309
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.380e-23 Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 LQRSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
L RSA+DS S YVR +LLK+LT++ E+G +G +TV NALD VK K+ DLRF LLV A + + + VF N +L+SAFEF+ERV+LR EMI AG+++A++ VR
Sbjct: 201 LARSAIDSCSNYVRCNLLKLLTIVTESGPSGFETVTNALDHVKVDKDEDLRFALLVEAFG-DADSSGVALITDLVVFFNTILSSAFEFEERVMLRTEMISAGMLEAMQRVR 310
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: UPI00109BB303 (inverted formin-2-like isoform X1 n=3 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BB303) HSP 1 Score: 53.5 bits (127), Expect = 6.760e-6 Identity = 28/108 (25.93%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 10 SAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
+A+D+ + ++ + ++L+ + G K ++AL+ K K RF L++ L ++ +P + F+N +L S +FD+RV LR E I G+++ + +R
Sbjct: 128 TALDTNNTMIKKQVFELLSALCLYSEQGYKLAIDALENYKVTKGQRYRFSLIINEL---KDAEVIPYSTACLAFINVILISTDDFDQRVRLRNEFIGLGLLEILTQLR 232
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: UPI001425A44F (inverted formin-2-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A44F) HSP 1 Score: 52.4 bits (124), Expect = 1.720e-5 Identity = 29/107 (27.10%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 13 AMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
A+D+ +E V++ L+++L+ + ++G +++L+ K K RF +V L ++ +P + F+NA+L S +FDER+ LR E I ++ + +R
Sbjct: 126 ALDTKNEMVKIQLIELLSALCVHSSSGYTLAIDSLEHYKITKQQRYRFSFMVNEL---KQDVIIPYKASLVSFINAILISTEDFDERIRLRNEFIGLKLLDILTQLR 229
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D7FR06_ECTSI (Formin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR06_ECTSI) HSP 1 Score: 51.6 bits (122), Expect = 3.100e-5 Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 52 LKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
L++L V++ G G + VL A+D K K +RF L+ AL MT E +L V +F+N ++ SA + +ER+ +R ++I G++ A+E ++
Sbjct: 101 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDAL-MTDEA-DLAFKRDVMLFINTLVNSAMDIEERIEIRADLIYTGILDAVERLK 192
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: A0A6H5L634_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L634_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 3.180e-5 Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 52 LKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
L++L V++ G G + VL A+D K K +RF L+ AL MT E +L V +F+N ++ SA + +ER+ +R ++I G++ A+E ++
Sbjct: 250 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDAL-MTDEA-DLAFKRDVMLFINTLVNSAMDIEERIEIRADLIYTGILDAVERLK 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153844.3554.1 >prot_H-elongata_contig153844.3554.1 ID=prot_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLback to top mRNA from alignment at H-elongata_contig153844:455..1319- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153844.3554.1 ID=mRNA_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig153844:455..1319- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153844:455..1319- >mRNA_H-elongata_contig153844.3554.1 ID=mRNA_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig153844:455..1319- (Himanthalia elongata Himel1 dioecious)back to top |