mRNA_H-elongata_contig153844.3554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153844.3554.1
Unique NamemRNA_H-elongata_contig153844.3554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: A0A6H5JDW8_9PHAE (FH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.880e-28
Identity = 69/110 (62.73%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    7 RSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRE-LPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            RSA+DSTSE VR SLLKVLTVM ETG  GLK VLNALDV KA+KN DLRF LL   +    +  E L  A+ V VFLN VL+ AF+F+ERVLLRGEM+  GV+ AI   R
Sbjct:  192 RSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKARKNQDLRFSLLPGIIVGGNDGEEDLRLALAVAVFLNTVLSRAFKFEERVLLRGEMVAGGVVAAIAGAR 301          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D8LCH4_ECTSI (FH2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.760e-26
Identity = 75/151 (49.67%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    7 RSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMT------------------------------------------REPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            RSA+DSTSE VR SLLKVLTVM ETG  GLK VLNALDV KAQKN DLRF LLV ALS                                             E   L  A+ V VFLN VL+ AFEF+ERVLLRGEM+  GV+ AI   R
Sbjct:  159 RSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKAQKNQDLRFSLLVGALSKAAXXXXXXXXXXRGTQPGSGSSEEEGYGVGGTQPGIRGGGNDGEEDGHLRLALAVAVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGAR 309          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.380e-23
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 LQRSAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            L RSA+DS S YVR +LLK+LT++ E+G +G +TV NALD VK  K+ DLRF LLV A     +   +     + VF N +L+SAFEF+ERV+LR EMI AG+++A++ VR
Sbjct:  201 LARSAIDSCSNYVRCNLLKLLTIVTESGPSGFETVTNALDHVKVDKDEDLRFALLVEAFG-DADSSGVALITDLVVFFNTILSSAFEFEERVMLRTEMISAGMLEAMQRVR 310          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: UPI00109BB303 (inverted formin-2-like isoform X1 n=3 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BB303)

HSP 1 Score: 53.5 bits (127), Expect = 6.760e-6
Identity = 28/108 (25.93%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   10 SAMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            +A+D+ +  ++  + ++L+ +      G K  ++AL+  K  K    RF L++  L   ++   +P +     F+N +L S  +FD+RV LR E I  G+++ +  +R
Sbjct:  128 TALDTNNTMIKKQVFELLSALCLYSEQGYKLAIDALENYKVTKGQRYRFSLIINEL---KDAEVIPYSTACLAFINVILISTDDFDQRVRLRNEFIGLGLLEILTQLR 232          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: UPI001425A44F (inverted formin-2-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A44F)

HSP 1 Score: 52.4 bits (124), Expect = 1.720e-5
Identity = 29/107 (27.10%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   13 AMDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            A+D+ +E V++ L+++L+ +    ++G    +++L+  K  K    RF  +V  L   ++   +P    +  F+NA+L S  +FDER+ LR E I   ++  +  +R
Sbjct:  126 ALDTKNEMVKIQLIELLSALCVHSSSGYTLAIDSLEHYKITKQQRYRFSFMVNEL---KQDVIIPYKASLVSFINAILISTEDFDERIRLRNEFIGLKLLDILTQLR 229          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: D7FR06_ECTSI (Formin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR06_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.100e-5
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   52 LKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            L++L V++  G  G + VL A+D  K  K   +RF  L+ AL MT E  +L     V +F+N ++ SA + +ER+ +R ++I  G++ A+E ++
Sbjct:  101 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDAL-MTDEA-DLAFKRDVMLFINTLVNSAMDIEERIEIRADLIYTGILDAVERLK 192          
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Match: A0A6H5L634_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L634_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.180e-5
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   52 LKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLLVRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQAIENVR 333
            L++L V++  G  G + VL A+D  K  K   +RF  L+ AL MT E  +L     V +F+N ++ SA + +ER+ +R ++I  G++ A+E ++
Sbjct:  250 LELLAVLMVDGPEGYRAVLAAMDYFKLVKGERVRFYSLLDAL-MTDEA-DLAFKRDVMLFINTLVNSAMDIEERIEIRADLIYTGILDAVERLK 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153844.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JDW8_9PHAE4.880e-2862.73FH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LCH4_ECTSI2.760e-2649.67FH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FPH1_ECTSI1.380e-2351.35Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
UPI00109BB3036.760e-625.93inverted formin-2-like isoform X1 n=3 Tax=Exaiptas... [more]
UPI001425A44F1.720e-527.10inverted formin-2-like isoform X1 n=2 Tax=Anneissi... [more]
D7FR06_ECTSI3.100e-534.04Formin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L634_9PHAE3.180e-534.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153844contigH-elongata_contig153844:455..1319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D8LCH4
KEGG koko:K11238
KEGG Pathwayko04011,map04011
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFormin, FH2 domain
Ec32 orthologEc-26_005060.2
Exons2
Model size333
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153844.3554.1prot_H-elongata_contig153844.3554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153844 455..1304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.5634255-CDS-H-elongata_contig153844:454..6581622929909.5634255-CDS-H-elongata_contig153844:454..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153844 455..658 -
1691679204.6680398-CDS-H-elongata_contig153844:454..6581691679204.6680398-CDS-H-elongata_contig153844:454..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153844 455..658 -
1622929909.576773-CDS-H-elongata_contig153844:1190..13041622929909.576773-CDS-H-elongata_contig153844:1190..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153844 1191..1304 -
1691679204.6834736-CDS-H-elongata_contig153844:1190..13041691679204.6834736-CDS-H-elongata_contig153844:1190..1304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153844 1191..1304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.5910275-UTR-H-elongata_contig153844:1304..13191622929909.5910275-UTR-H-elongata_contig153844:1304..1319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153844 1305..1319 -
1691679204.708666-UTR-H-elongata_contig153844:1304..13191691679204.708666-UTR-H-elongata_contig153844:1304..1319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153844 1305..1319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153844.3554.1

>prot_H-elongata_contig153844.3554.1 ID=prot_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MDSTSEYVRLSLLKVLTVMVETGAAGLKTVLNALDVVKAQKNSDLRFDLL
VRALSMTREPRELPQAVGVTVFLNAVLASAFEFDERVLLRGEMIKAGVMQ
AIENVR
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mRNA from alignment at H-elongata_contig153844:455..1319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153844.3554.1 ID=mRNA_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig153844:455..1319- (Himanthalia elongata Himel1 dioecious)
CTCCAGCGGAGCGCCATGGACTCCACGAGTGAGTACGTGCGACTGAGCCT CCTGAAGGTGCTAACCGTCATGGTGGAGACCGGTGCCGCCGGTCTCAAGA CGGTTCTCAACGCCCTCGACGTCGTGAAGGTGACGTCCACAAAATCCGTT TTGTTGTTATAGTCGCTGGAGGGAGGGGAGGCGAGGAGAGCGGGAGGCGT TACTGGAATCGATGAATCGTCAAGTACTTCCTGTTTGGAGGTCGAGAATG TTTATTCACGAATGCCTGTACCGGTGCCCCTCCCCTCCCTCCCCTCCCCG CCTTCCTTCTCGATACGAAAACCCCTGACAAACGTCTAAGCATTTAAAAG TGGTCGTAATTCGAGGGATATTTTCTCGTCTCTGTTTTTTTTTTTACGTG AGGGAGGCGCCATCTCGACCGACTGAAATATCCCCCGCGCCGCCGCCGCT CTCTCCCTGTCCTCTCTGTCCTCCCGAGGACACGTTGGTAATAATCTACT GTAACAGCAAAGGTTTGTAAACGTAGATTACGCCCTGTCTCTTCCCCTTC CCCGCGTTCTCTTCCTTTTTCGTGACGCACTGCGACATTTGTATTTCTGT GTCTCGGTTTTCGATCCTCGGTGGCGTTCCCGTTTCCGTTTCGTTTTGTT TGGATGGTCAGGCACAGAAAAACAGCGACCTACGATTCGACCTACTCGTG CGCGCGCTCTCGATGACCCGAGAGCCCCGAGAGCTGCCGCAGGCGGTTGG CGTGACGGTGTTTCTCAACGCCGTCCTCGCCAGCGCGTTCGAGTTCGATG AGAGAGTGCTGCTCCGCGGAGAGATGATCAAGGCCGGCGTTATGCAGGCC ATCGAGAATGTCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig153844:455..1319-

>mRNA_H-elongata_contig153844.3554.1 ID=mRNA_H-elongata_contig153844.3554.1|Name=mRNA_H-elongata_contig153844.3554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig153844:455..1319- (Himanthalia elongata Himel1 dioecious)
ATGGACTCCACGAGTGAGTACGTGCGACTGAGCCTCCTGAAGGTGCTAAC
CGTCATGGTGGAGACCGGTGCCGCCGGTCTCAAGACGGTTCTCAACGCCC
TCGACGTCGTGAAGATGGACTCCACGAGTGAGTACGTGCGACTGAGCCTC
CTGAAGGTGCTAACCGTCATGGTGGAGACCGGTGCCGCCGGTCTCAAGAC
GGTTCTCAACGCCCTCGACGTCGTGAAGGCACAGAAAAACAGCGACCTAC
GATTCGACCTACTCGTGCGCGCGCTCTCGATGACCCGAGAGCCCCGAGAG
CTGCCGCAGGCGGTTGGCGTGACGGTGTTTCTCAACGCCGTCCTCGCCAG
CGCGTTCGAGTTCGATGAGAGAGTGCTGCTCCGCGGAGAGATGATCAAGG
CCGGCGTTATGCAGGCCATCGAGAATGTCCGCGCACAGAAAAACAGCGAC
CTACGATTCGACCTACTCGTGCGCGCGCTCTCGATGACCCGAGAGCCCCG
AGAGCTGCCGCAGGCGGTTGGCGTGACGGTGTTTCTCAACGCCGTCCTCG
CCAGCGCGTTCGAGTTCGATGAGAGAGTGCTGCTCCGCGGAGAGATGATC
AAGGCCGGCGTTATGCAGGCCATCGAGAATGTCCGC
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