mRNA_H-elongata_contig153781.3549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153781.3549.1
Unique NamemRNA_H-elongata_contig153781.3549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: D8LM14_ECTSI (Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM14_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 2.850e-62
Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 1
Query:   25 DLQAALDYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENEN 390
            D++AALDYTLARKIDRYQAQDVM+ V ED++EL GDG VSDDFCLKGGLARIGG  VVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLF LAERFGLPVVTLVDTCGAWPSFE   + ++
Sbjct:  285 DMEAALDYTLARKIDRYQAQDVMSEVLEDFIELCGDGKVSDDFCLKGGLARIGGTPVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFQLAERFGLPVVTLVDTCGAWPSFEAERDGQS 406          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A7S3Y4I5_HETAK (Acetyl-CoA carboxytransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y4I5_HETAK)

HSP 1 Score: 160 bits (405), Expect = 7.380e-43
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   25 DLQAALDYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENENMLRAQSNIPFSHL 429
            ++ A  DYT +R +DRYQ QD+M  +F D+VELSGDG V  D C+KGGLA+  G+ VVV+G+ KGH+P DM+ ANYGM SPAGYRTALRL  LAERF +PV+++VDTCGAWPSF    + ++   A + +  + L
Sbjct:  331 EINAPADYTKSRSMDRYQGQDLMMELFTDFVELSGDGRVGTDPCMKGGLAKFNGMPVVVVGSTKGHSPKDMKDANYGMSSPAGYRTALRLMKLAERFDIPVISIVDTCGAWPSFVAERDGQSEAIATNLVEMAGL 465          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: F0XWB2_AURAN (Acetyl-CoA carboxytransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWB2_AURAN)

HSP 1 Score: 152 bits (383), Expect = 6.750e-40
Identity = 76/125 (60.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   19 ARDLQAALDYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARI-GGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENEN 390
            A DL A  DYT +R +DR Q +D+   +F D+VEL+GDG V  D CL GGLA   GG  VVV+G  KGH+  ++ A NYGMPSPAGYRTAL+LF LAERFGLPVVT VDTCGAWPSFE     ++
Sbjct:  277 AADLAATPDYTASRALDRPQYEDLRDLLFADFVELAGDGRVGRDACLSGGLATFRGGPPVVVLGCRKGHSAAELAAHNYGMPSPAGYRTALKLFRLAERFGLPVVTFVDTCGAWPSFEAEGAGQS 401          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A0G4HNQ6_9ALVE (Acetyl-CoA carboxytransferase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNQ6_9ALVE)

HSP 1 Score: 144 bits (363), Expect = 3.240e-37
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENEN 390
            +YT ARKIDR Q QD++  +F D+VE++GDG V  D C+KGG+A   G   VV+ T KGHTPGDMQ ANYGMPSP GYRTA RL   AERF +PVVTL+DT GA+P+F+   E ++
Sbjct:  255 NYTRARKIDRPQTQDLIRELFTDFVEMAGDGKVGLDVCVKGGIAAFRGHPCVVIATSKGHTPGDMQKANYGMPSPHGYRTAYRLMQTAERFSIPVVTLIDTVGAYPNFQSEKEGQS 370          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A7S3NKJ5_9STRA (Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKJ5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.720e-32
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   19 ARDLQAALDYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARIG-----GVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENEN 390
            A ++    DY  +R I R Q  D    +F  Y+ELSGDG V  D C+KGG+A +          +V+G  KGHTPG+MQA NYGMPSPAGYRTA RL  +A+RF LP++T VDTCGAWPSF      ++
Sbjct:  251 AEEMAKEPDYAASRAITRPQYADFRDALFYGYIELSGDGQVGSDPCIKGGVAFLHVSNDTDFPCIVIGCGKGHTPGEMQAHNYGMPSPAGYRTAKRLMEMADRFHLPIITFVDTCGAWPSFRAEEAGQS 379          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A5J4VDQ8_9EUKA (Acetyl-CoA carboxytransferase (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VDQ8_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 1.850e-29
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLA---------------------RIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENEN 390
            D+  +RK+DR QAQD+   V +D++E+ GDG +  D C+ GG+A                     +  G  VVV+GTVKGH+  D  +A YGM +P+GYRTAL+LF  AERF LPVVTLVDT GA PSF      ++
Sbjct:  257 DHNRSRKLDRVQAQDIFGNVLKDFIEIRGDGQIGIDSCVHGGIAILPYIETDNETDKQSDSEPKSQTKGYPVVVIGTVKGHSEADFASAGYGMATPSGYRTALKLFNFAERFSLPVVTLVDTVGAEPSFSAERAGQS 393          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A0A1UA80_ENTIV (Acetyl-CoA carboxytransferase n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UA80_ENTIV)

HSP 1 Score: 121 bits (303), Expect = 3.990e-29
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDDFCLKGGLARIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSFEVSAENENMLRAQSNIPFSHL 429
            +Y  +R+ DR Q  D++  VF+ ++EL GDG V  D C+ GGLA   G  V+ +   KGH P +M  +N+GM +PAGYRTA RL  LAE+FGLPV+TLVDT GA+PSFE   E +    A S +  + L
Sbjct:  247 NYNDSRREDRVQGIDILNKVFDGFIELHGDGKVGSDKCVCGGLATFKGYPVMAICMKKGHNPNEMIDSNFGMATPAGYRTASRLMKLAEQFGLPVITLVDTPGAYPSFESEIEGQPEAIAYSLVTMASL 375          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A812R381_9DINO (Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812R381_9DINO)

HSP 1 Score: 120 bits (300), Expect = 9.920e-29
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSD--DFCLKGGLARI-GGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSF--EVSAENE 387
            DY  +R++DRY + D++  +   +++L GDG      D CL+ GLA +  G +VVVM   KGHTP D +  N+ MP+PAGYRTALR F LAERFGLPVVTLVDT GAWPSF  E++ ++E
Sbjct:  260 DYLKSRRLDRYDSTDILKQLSVRFIDLGGDGKGPHGLDKCLRCGLATLQSGRSVVVMRCCKGHTPVDREKHNHAMPAPAGYRTALRFFDLAERFGLPVVTLVDTVGAWPSFAAEMAGQSE 379          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A813D2P8_9DINO (Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A813D2P8_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.020e-28
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSD--DFCLKGGLARI-GGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSF--EVSAENE 387
            DY  +R++DRY + D++  +   +++L GDG      D CL+ GLA +  G +VVVM   KGHTP D +  N+ MP+PAGYRTALR F LAERFGLPVVTLVDT GAWPSF  E++ ++E
Sbjct:  404 DYLKSRRLDRYDSTDILKQLSVRFIDLGGDGKGPHGLDKCLRCGLATLQSGRSVVVMRCCKGHTPVDREKHNHAMPAPAGYRTALRFFDLAERFGLPVVTLVDTVGAWPSFAAEMAGQSE 523          
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Match: A0A1Q9C6P9_SYMMI (Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C6P9_SYMMI)

HSP 1 Score: 120 bits (300), Expect = 1.030e-28
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   43 DYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSD--DFCLKGGLARI-GGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFYLAERFGLPVVTLVDTCGAWPSF--EVSAENE 387
            DY  +R++DRY + D++  +   +++L GDG      D CL+ GLA +  G +VVVM   KGHTP D +  N+ MP+PAGYRTALR F LAERFGLPVVTLVDT GAWPSF  E++ ++E
Sbjct:  836 DYLKSRRLDRYDSTDILKQLSVRFIDLGGDGKGPHGLDKCLRCGLATLQSGRSVVVMRCCKGHTPVDREKHNHAMPAPAGYRTALRFFDLAERFGLPVVTLVDTVGAWPSFAAEMAGQSE 955          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153781.3549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM14_ECTSI2.850e-6284.43Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus s... [more]
A0A7S3Y4I5_HETAK7.380e-4355.56Acetyl-CoA carboxytransferase n=2 Tax=Sar TaxID=26... [more]
F0XWB2_AURAN6.750e-4060.80Acetyl-CoA carboxytransferase n=1 Tax=Aureococcus ... [more]
A0A0G4HNQ6_9ALVE3.240e-3759.48Acetyl-CoA carboxytransferase n=1 Tax=Chromera vel... [more]
A0A7S3NKJ5_9STRA1.720e-3250.39Acetyl-coenzyme A carboxylase carboxyl transferase... [more]
A0A5J4VDQ8_9EUKA1.850e-2945.26Acetyl-CoA carboxytransferase (Fragment) n=1 Tax=S... [more]
A0A0A1UA80_ENTIV3.990e-2948.06Acetyl-CoA carboxytransferase n=1 Tax=Entamoeba in... [more]
A0A812R381_9DINO9.920e-2953.33Acetyl-coenzyme A carboxylase carboxyl transferase... [more]
A0A813D2P8_9DINO1.020e-2853.33Acetyl-coenzyme A carboxylase carboxyl transferase... [more]
A0A1Q9C6P9_SYMMI1.030e-2853.33Acetyl-coenzyme A carboxylase carboxyl transferase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153781contigH-elongata_contig153781:2..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue3.7e-54
Seed eggNOG ortholog2880.D8LM14
EggNOG free text desc.pyruvate carboxylase activity
EggNOG OGsCOG1038@1,COG4799@1,KOG0369@2759,KOG0540@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarboxylase
Ec32 orthologEc-14_002460.1
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.277791-CDS-H-elongata_contig153781:1..1771622929909.277791-CDS-H-elongata_contig153781:1..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153781 2..177 -
1691679204.5129533-CDS-H-elongata_contig153781:1..1771691679204.5129533-CDS-H-elongata_contig153781:1..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153781 2..177 -
1622929909.2875705-CDS-H-elongata_contig153781:814..10671622929909.2875705-CDS-H-elongata_contig153781:814..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153781 815..1067 -
1691679204.5226612-CDS-H-elongata_contig153781:814..10671691679204.5226612-CDS-H-elongata_contig153781:814..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153781 815..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153781.3549.1prot_H-elongata_contig153781.3549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153781 2..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153781.3549.1

>prot_H-elongata_contig153781.3549.1 ID=prot_H-elongata_contig153781.3549.1|Name=mRNA_H-elongata_contig153781.3549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
PTYTIFARDLQAALDYTLARKIDRYQAQDVMTTVFEDYVELSGDGHVSDD
FCLKGGLARIGGVAVVVMGTVKGHTPGDMQAANYGMPSPAGYRTALRLFY
LAERFGLPVVTLVDTCGAWPSFEVSAENENMLRAQSNIPFSHL
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mRNA from alignment at H-elongata_contig153781:2..1067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153781.3549.1 ID=mRNA_H-elongata_contig153781.3549.1|Name=mRNA_H-elongata_contig153781.3549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-elongata_contig153781:2..1067- (Himanthalia elongata Himel1 dioecious)
CCGACGTATACGATCTTCGCGCGCGATCTTCAGGCCGCTCTAGACTACAC GCTGGCGCGTAAGATCGATCGGTACCAGGCGCAGGACGTGATGACCACCG TGTTCGAGGACTACGTGGAGCTCTCCGGCGACGGCCACGTGTCCGACGAC TTCTGCCTCAAGGGGGGTCTCGCCCGCATCGGCGGGGTCGCTGTGGTGGT GATGGGTACCGTCAAGGGCCACACCCCCGGAGACATGCAGGCGGCCAATT ACGGTGAGCGAAAGGCGAGGAAATCCGAAAAGGCTATAAAATAACGAGAG CGGGGATGGCAGAGCCCACCACGCGCCTTTTTTTGTCTGGAAGTTGGTAT TATCCGAACACAATGCTGTAACCTGAAGAACGTATCAAGTGTCGCGTCCG GATTAGCGAAAGCAGAACCGTCGAGCGCCATTGGTGCTTTTTATCTGTTT GGGAGGCGGCAGGAAGTGAAGAAGAGGGGGGGGGTGGGAGCTCTAGGGTT AAAATGGCCGTAATTTGATGTTGGAAGTTTCCCGGCGAGGATATTGACGT CATGATATATTTATTTATACCGTGTTACAGTAGATAATGGTACGCCCTTG TGTTTCATCCAACGTCGGTCGAGAAGGACATCATTTGACCGAAAAACGTC GCAGGTACTTGTCTGGAAAAAAAAAACGGACTTCACGAGAGAAAAACATA GCTGGTAGATTGTTTTAAAATAATTATTTTGTTTCGAGAGCTGCACAGTA GCGAATCTCATACCCCACACGGCAACGGCAAGCGACGAAATACCTGCGCG GGTAGCTCATTCTGTGAACTTGTATTTTATTATTTTGACCCGAAAGCAGA ACTAATAACTCCTCACGATGTCCGCTCGAACGCTGATCAGGCATGCCTAG CCCCGCGGGGTACCGGACGGCTCTACGGCTCTTTTACCTGGCGGAGAGAT TTGGCTTGCCGGTGGTGACGCTCGTTGATACTTGCGGCGCGTGGCCGTCG TTCGAGGTCAGTGCGGAGAATGAAAACATGTTGCGGGCGCAATCAAACAT CCCATTCAGTCACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig153781:2..1067-

>mRNA_H-elongata_contig153781.3549.1 ID=mRNA_H-elongata_contig153781.3549.1|Name=mRNA_H-elongata_contig153781.3549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig153781:2..1067- (Himanthalia elongata Himel1 dioecious)
CCGACGTATACGATCTTCGCGCGCGATCTTCAGGCCGCTCTAGACTACAC
GCTGGCGCGTAAGATCGATCGGTACCAGGCGCAGGACGTGATGACCACCG
TGTTCGAGGACTACGTGGAGCTCTCCGGCGACGGCCACGTGTCCGACGAC
TTCTGCCTCAAGGGGGGTCTCGCCCGCATCGGCGGGGTCGCTGTGGTGGT
GATGGGTACCGTCAAGGGCCACACCCCCGGAGACATGCAGGCGGCCAATT
ACGCCGACGTATACGATCTTCGCGCGCGATCTTCAGGCCGCTCTAGACTA
CACGCTGGCGCGTAAGATCGATCGGTACCAGGCGCAGGACGTGATGACCA
CCGTGTTCGAGGACTACGTGGAGCTCTCCGGCGACGGCCACGTGTCCGAC
GACTTCTGCCTCAAGGGGGGTCTCGCCCGCATCGGCGGGGTCGCTGTGGT
GGTGATGGGTACCGTCAAGGGCCACACCCCCGGAGACATGCAGGCGGCCA
ATTACGGCATGCCTAGCCCCGCGGGGTACCGGACGGCTCTACGGCTCTTT
TACCTGGCGGAGAGATTTGGCTTGCCGGTGGTGACGCTCGTTGATACTTG
CGGCGCGTGGCCGTCGTTCGAGGTCAGTGCGGAGAATGAAAACATGTTGC
GGGCGCAATCAAACATCCCATTCAGTCACCTCGCATGCCTAGCCCCGCGG
GGTACCGGACGGCTCTACGGCTCTTTTACCTGGCGGAGAGATTTGGCTTG
CCGGTGGTGACGCTCGTTGATACTTGCGGCGCGTGGCCGTCGTTCGAGGT
CAGTGCGGAGAATGAAAACATGTTGCGGGCGCAATCAAACATCCCATTCA
GTCACCTC
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