mRNA_H-elongata_contig153272.3517.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153272.3517.1
Unique NamemRNA_H-elongata_contig153272.3517.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.190e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   19 EIPEPDESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVELR 204
            E+ EP+ SNKP NR Y+QQT+ +W PLLTPWR VGGYLL+GL+FV LGA LW D  DVVELR
Sbjct:    8 ELIEPELSNKPANRPYYQQTLRSWSPLLTPWRAVGGYLLIGLIFVPLGAVLWHD-KDVVELR 68
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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: A0A2R5GA09_9STRA (Cell cycle control protein 50A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GA09_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.310e-8
Identity = 25/53 (47.17%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   40 SNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVE 198
            SN+P+N ++ QQ + AW P+LTP  V+G +++VG++FV +GA+LWK + D+ E
Sbjct:   16 SNRPENTKFKQQKLDAWQPILTPAWVIGTFIVVGVIFVPVGAYLWKLSDDLFE 68
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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: UPI0006447E10 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447E10)

HSP 1 Score: 49.3 bits (116), Expect = 4.040e-5
Identity = 22/55 (40.00%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   34 DESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVE 198
            D+SN+P N  + QQ M AW P+LTP  V+  ++++G++F+ +GA +   + +VVE
Sbjct:    5 DKSNRPSNTAFKQQRMKAWEPILTPTPVIITFIVIGVIFIPIGAVMISASNNVVE 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LE53_ECTSI1.190e-1869.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2R5GA09_9STRA2.310e-847.17Cell cycle control protein 50A n=1 Tax=Hondaea fer... [more]
UPI0006447E104.040e-540.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153272contigH-elongata_contig153272:459..665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D8LE53
Preferred nameTMEM30B
KEGG koko:K08817
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0010008,GO:0010570,GO:0010720,GO:0010876,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015247,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015893,GO:0015914,GO:0015917,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022857,GO:0023052,GO:0030141,GO:0030154,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031344,GO:0031346,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034204,GO:0034220,GO:0034613,GO:0035577,GO:0035579,GO:0036010,GO:0036230,GO:0040008,GO:0042119,GO:0042221,GO:0042493,GO:0042581,GO:0042582,GO:0042623,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043492,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045332,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0051960,GO:0051962,GO:0055085,GO:0060284,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070861,GO:0070863,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090087,GO:0090316,GO:0097035,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0099503,GO:0120035,GO:1902494,GO:1903827,GO:1903829,GO:1904949,GO:1904951,GO:1990351,GO:1990530,GO:1990531,GO:2000026
EggNOG free text desc.aminophospholipid transmembrane transporter activity
EggNOG OGsCOG5035@1,KOG2952@2759
EC2.7.11.22
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.0392692-CDS-H-elongata_contig153272:458..6651622929906.0392692-CDS-H-elongata_contig153272:458..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153272 459..665 -
1691679203.0302725-CDS-H-elongata_contig153272:458..6651691679203.0302725-CDS-H-elongata_contig153272:458..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153272 459..665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153272.3517.1prot_H-elongata_contig153272.3517.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153272 459..665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153272.3517.1

>prot_H-elongata_contig153272.3517.1 ID=prot_H-elongata_contig153272.3517.1|Name=mRNA_H-elongata_contig153272.3517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MERIRPEIPEPDESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMF
VLLGAFLWKDATDVVELR*
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mRNA from alignment at H-elongata_contig153272:459..665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153272.3517.1 ID=mRNA_H-elongata_contig153272.3517.1|Name=mRNA_H-elongata_contig153272.3517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig153272:459..665- (Himanthalia elongata Himel1 dioecious)
ATGGAGCGGATACGTCCCGAAATACCCGAGCCGGATGAGAGCAACAAGCC
CCAGAACAGGCGATATTTTCAGCAGACAATGTGGGCTTGGTATCCGTTGC
TGACACCGTGGCGGGTGGTGGGTGGTTATCTGCTGGTCGGTTTGATGTTT
GTTCTGCTAGGAGCGTTCTTGTGGAAAGATGCTACCGACGTCGTCGAGCT
GAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig153272:459..665-

>mRNA_H-elongata_contig153272.3517.1 ID=mRNA_H-elongata_contig153272.3517.1|Name=mRNA_H-elongata_contig153272.3517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig153272:459..665- (Himanthalia elongata Himel1 dioecious)
ATGGAGCGGATACGTCCCGAAATACCCGAGCCGGATGAGAGCAACAAGCC
CCAGAACAGGCGATATTTTCAGCAGACAATGTGGGCTTGGTATCCGTTGC
TGACACCGTGGCGGGTGGTGGGTGGTTATCTGCTGGTCGGTTTGATGTTT
GTTCTGCTAGGAGCGTTCTTGTGGAAAGATGCTACCGACGTCGTCGAGCT
GAGGTAAATGGAGCGGATACGTCCCGAAATACCCGAGCCGGATGAGAGCA
ACAAGCCCCAGAACAGGCGATATTTTCAGCAGACAATGTGGGCTTGGTAT
CCGTTGCTGACACCGTGGCGGGTGGTGGGTGGTTATCTGCTGGTCGGTTT
GATGTTTGTTCTGCTAGGAGCGTTCTTGTGGAAAGATGCTACCGACGTCG
TCGAGCTGAGGTAA
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