prot_H-elongata_contig153272.3517.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig153272.3517.1
Unique Name	prot_H-elongata_contig153272.3517.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	69

Homology

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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.190e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0

Query:    7 EIPEPDESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVELR 68
            E+ EP+ SNKP NR Y+QQT+ +W PLLTPWR VGGYLL+GL+FV LGA LW D  DVVELR
Sbjct:    8 ELIEPELSNKPANRPYYQQTLRSWSPLLTPWRAVGGYLLIGLIFVPLGAVLWHD-KDVVELR 68

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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: A0A2R5GA09_9STRA (Cell cycle control protein 50A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GA09_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.310e-8
Identity = 25/53 (47.17%), Postives = 41/53 (77.36%), Query Frame = 0

Query:   14 SNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVE 66
            SN+P+N ++ QQ + AW P+LTP  V+G +++VG++FV +GA+LWK + D+ E
Sbjct:   16 SNRPENTKFKQQKLDAWQPILTPAWVIGTFIVVGVIFVPVGAYLWKLSDDLFE 68

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BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Match: UPI0006447E10 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447E10)

HSP 1 Score: 49.3 bits (116), Expect = 4.040e-5
Identity = 22/55 (40.00%), Postives = 38/55 (69.09%), Query Frame = 0

Query:   12 DESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMFVLLGAFLWKDATDVVE 66
            D+SN+P N  + QQ M AW P+LTP  V+  ++++G++F+ +GA +   + +VVE
Sbjct:    5 DKSNRPSNTAFKQQRMKAWEPILTPTPVIITFIVIGVIFIPIGAVMISASNNVVE 59

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot

BLAST of mRNA_H-elongata_contig153272.3517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LE53_ECTSI	1.190e-18	69.35	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A2R5GA09_9STRA	2.310e-8	47.17	Cell cycle control protein 50A n=1 Tax=Hondaea fer...	[more]
UPI0006447E10	4.040e-5	40.00	hypothetical protein n=1 Tax=Acytostelium subglobo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..58
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 59..68
None	No IPR available	TMHMM	TMhelix		coord: 36..58

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig153272	contig	H-elongata_contig153272:459..665 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig153272.3517.1	mRNA_H-elongata_contig153272.3517.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig153272 459..665 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig153272.3517.1 ID=prot_H-elongata_contig153272.3517.1|Name=mRNA_H-elongata_contig153272.3517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MERIRPEIPEPDESNKPQNRRYFQQTMWAWYPLLTPWRVVGGYLLVGLMF
VLLGAFLWKDATDVVELR*