mRNA_H-elongata_contig15262.3476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15262.3476.1
Unique NamemRNA_H-elongata_contig15262.3476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15262.3476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15262contigH-elongata_contig15262:265..2492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size2228
Cds size2013
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15262.3476.1prot_H-elongata_contig15262.3476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15262 314..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.2627542-UTR-H-elongata_contig15262:264..3131622929902.2627542-UTR-H-elongata_contig15262:264..313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15262 265..313 +
1691679201.5064664-UTR-H-elongata_contig15262:264..3131691679201.5064664-UTR-H-elongata_contig15262:264..313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15262 265..313 +
1622929902.3025386-UTR-H-elongata_contig15262:2326..24921622929902.3025386-UTR-H-elongata_contig15262:2326..2492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15262 2327..2492 +
1691679201.52141-UTR-H-elongata_contig15262:2326..24921691679201.52141-UTR-H-elongata_contig15262:2326..2492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15262 2327..2492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.282901-CDS-H-elongata_contig15262:313..23261622929902.282901-CDS-H-elongata_contig15262:313..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15262 314..2326 +
1691679201.5140176-CDS-H-elongata_contig15262:313..23261691679201.5140176-CDS-H-elongata_contig15262:313..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15262 314..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15262.3476.1

>prot_H-elongata_contig15262.3476.1 ID=prot_H-elongata_contig15262.3476.1|Name=mRNA_H-elongata_contig15262.3476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=671bp
MASQHGFTVTRGLLLQSSRRISKTAAKTAELCRYTWSPACYGFHSSSWYA
DADEIIDVVSTTGGPEKNIYTSTKPEKIKQPQQRQRSGSRWPLTSIRSPL
QRAGMRDQVSGSWRRAAEVDAATEVDNKNNWVSTARKDIFDQGTARQEGA
EEWTMAYRHRRKTGVVVGARTVRVVTSEPENTQEKSMEIYATLRTSAQNG
TWQTALGLITQMKNEGLKPDVRMVTMAITACSKDGRWEEALQLLRDMPQM
GTEPNVVTYNACIHACARGGQSEISVELLREMAQAGLAPDVISYSAAIGA
CANDKKFRQAIRLLREMSTTGINPGLVAYNNAVRSCRNSQQWELAVNLFR
EMVAIGVEPNTVTYSMAIEACAHSRRLDDALDLLSEMRELGMNPDLNSWK
AVMRVLGRGKQWELSIVFLRDMSAAGNDPSVHCFNAAIAACCKKSEWEMA
VALLREMKVIGVTPTLTTFSLCISACENGSASDQALLLLREMQRAGMTPR
LVSFHAAIHACAKNLEYQRAIALLRDMPSAGVEPSIGTYNSVIKACGEAG
RWSDAVKLLREATSLNLCPTVSTFNSAIVACAISGRGDEAVDLLHEMSAM
DGISPSVASFSWTIAAFARTSQVEWTVSILSQVPVAGIAPDSVNQHVAAC
NVHVDRCRERLGTVTRNSVQ*
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mRNA from alignment at H-elongata_contig15262:265..2492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15262.3476.1 ID=mRNA_H-elongata_contig15262.3476.1|Name=mRNA_H-elongata_contig15262.3476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2228bp|location=Sequence derived from alignment at H-elongata_contig15262:265..2492+ (Himanthalia elongata Himel1 dioecious)
AGGCCACATACTGACTCCGCGAGTCAGCCTTGAGTTGCATCCATCATACA
TGGCCTCCCAACACGGCTTCACCGTAACGAGAGGGCTTCTGCTTCAGTCG
TCTCGGCGCATCTCAAAGACTGCCGCAAAGACTGCCGAACTTTGCCGCTA
CACGTGGTCACCGGCCTGTTACGGTTTCCACTCCTCGTCTTGGTACGCCG
ACGCTGACGAAATAATCGACGTCGTTTCTACGACCGGTGGACCCGAAAAA
AATATATATACCAGTACGAAGCCGGAGAAGATAAAACAGCCTCAGCAACG
ACAGCGATCGGGCTCAAGGTGGCCGCTTACGTCGATTCGCTCTCCTCTTC
AGCGCGCCGGAATGCGTGATCAGGTTTCCGGTTCGTGGCGTCGGGCCGCC
GAGGTGGATGCGGCAACAGAGGTGGATAACAAAAATAATTGGGTTTCCAC
TGCTCGCAAAGATATATTTGACCAGGGCACGGCTAGGCAAGAAGGGGCGG
AGGAATGGACGATGGCCTATCGCCACCGGCGGAAAACTGGGGTGGTGGTT
GGTGCAAGAACCGTGAGAGTAGTTACTTCGGAGCCGGAAAACACTCAAGA
AAAGAGCATGGAGATTTACGCGACATTGCGCACCTCGGCTCAGAACGGAA
CGTGGCAAACTGCGCTCGGTCTCATCACGCAGATGAAGAACGAAGGGTTG
AAGCCCGATGTGCGAATGGTGACGATGGCGATAACCGCCTGTTCAAAGGA
TGGGAGGTGGGAGGAGGCACTTCAATTGCTCAGGGACATGCCTCAGATGG
GGACCGAGCCCAACGTCGTGACGTACAACGCATGCATACACGCGTGTGCG
AGGGGGGGGCAGTCGGAGATCTCCGTGGAGCTTCTGAGAGAGATGGCGCA
AGCGGGGCTAGCCCCGGATGTCATCAGCTATTCGGCCGCGATAGGCGCGT
GCGCCAACGATAAAAAATTTCGTCAAGCTATTCGACTTCTTCGCGAAATG
TCGACAACGGGGATTAACCCGGGCCTGGTTGCTTACAACAACGCCGTTAG
ATCCTGTCGCAACAGCCAGCAGTGGGAGCTCGCTGTAAATCTGTTTAGGG
AGATGGTTGCAATCGGGGTAGAACCAAATACGGTCACTTACTCGATGGCG
ATTGAGGCCTGTGCGCACAGCCGCCGCCTCGACGATGCGCTCGATTTATT
ATCGGAGATGAGAGAACTGGGTATGAATCCCGACTTGAATTCCTGGAAGG
CGGTCATGCGAGTGCTGGGTCGCGGCAAGCAATGGGAGCTTTCAATTGTA
TTCTTGAGGGACATGTCGGCCGCCGGGAACGACCCAAGCGTGCATTGCTT
CAACGCAGCCATCGCCGCGTGTTGTAAAAAGTCGGAGTGGGAGATGGCCG
TAGCTCTGTTGCGAGAGATGAAGGTCATAGGCGTGACGCCAACCTTGACG
ACGTTCAGTCTGTGCATTTCCGCGTGCGAAAACGGGTCCGCGAGCGACCA
AGCGCTGTTGTTGCTGCGAGAGATGCAACGGGCAGGCATGACTCCTCGCT
TGGTCTCCTTCCATGCCGCTATTCACGCTTGCGCCAAAAATCTAGAGTAC
CAGCGTGCCATTGCCTTGCTGAGGGACATGCCCTCCGCCGGAGTGGAACC
ATCAATCGGAACGTACAACAGCGTCATCAAGGCCTGTGGCGAAGCCGGGC
GCTGGAGCGACGCCGTTAAACTGCTGAGAGAAGCGACGTCACTGAACCTT
TGCCCAACCGTGAGTACCTTCAATTCGGCGATTGTTGCTTGCGCCATCAG
CGGCCGGGGGGATGAGGCGGTCGATCTCTTGCATGAGATGTCGGCCATGG
ATGGGATCTCGCCCTCAGTCGCTAGCTTCAGCTGGACGATCGCGGCCTTT
GCGCGAACGAGCCAGGTGGAGTGGACTGTATCTATTCTGAGTCAAGTCCC
CGTGGCGGGTATTGCTCCTGATAGCGTGAACCAACACGTCGCTGCTTGTA
ACGTTCATGTTGATAGATGCCGGGAGCGTTTGGGAACAGTAACTAGAAAT
AGTGTGCAGTAAAAGCATATAATCATTTTACAGCGTTTTGGCAGCGTGAG
CGAGCGCCCGCCGCTTTGGGTACACAGGTATCCACGAATGCCCGCTCTTG
CGCGGTAGATATTTTTTCAACGCGGTATTCGGTGATTTTACAGTAGTGAA
AGCAAACAGGAAAACGGGGAAATGGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig15262:265..2492+

>mRNA_H-elongata_contig15262.3476.1 ID=mRNA_H-elongata_contig15262.3476.1|Name=mRNA_H-elongata_contig15262.3476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4026bp|location=Sequence derived from alignment at H-elongata_contig15262:265..2492+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCCAACACGGCTTCACCGTAACGAGAGGGCTTCTGCTTCAGTC
GTCTCGGCGCATCTCAAAGACTGCCGCAAAGACTGCCGAACTTTGCCGCT
ACACGTGGTCACCGGCCTGTTACGGTTTCCACTCCTCGTCTTGGTACGCC
GACGCTGACGAAATAATCGACGTCGTTTCTACGACCGGTGGACCCGAAAA
AAATATATATACCAGTACGAAGCCGGAGAAGATAAAACAGCCTCAGCAAC
GACAGCGATCGGGCTCAAGGTGGCCGCTTACGTCGATTCGCTCTCCTCTT
CAGCGCGCCGGAATGCGTGATCAGGTTTCCGGTTCGTGGCGTCGGGCCGC
CGAGGTGGATGCGGCAACAGAGGTGGATAACAAAAATAATTGGGTTTCCA
CTGCTCGCAAAGATATATTTGACCAGGGCACGGCTAGGCAAGAAGGGGCG
GAGGAATGGACGATGGCCTATCGCCACCGGCGGAAAACTGGGGTGGTGGT
TGGTGCAAGAACCGTGAGAGTAGTTACTTCGGAGCCGGAAAACACTCAAG
AAAAGAGCATGGAGATTTACGCGACATTGCGCACCTCGGCTCAGAACGGA
ACGTGGCAAACTGCGCTCGGTCTCATCACGCAGATGAAGAACGAAGGGTT
GAAGCCCGATGTGCGAATGGTGACGATGGCGATAACCGCCTGTTCAAAGG
ATGGGAGGTGGGAGGAGGCACTTCAATTGCTCAGGGACATGCCTCAGATG
GGGACCGAGCCCAACGTCGTGACGTACAACGCATGCATACACGCGTGTGC
GAGGGGGGGGCAGTCGGAGATCTCCGTGGAGCTTCTGAGAGAGATGGCGC
AAGCGGGGCTAGCCCCGGATGTCATCAGCTATTCGGCCGCGATAGGCGCG
TGCGCCAACGATAAAAAATTTCGTCAAGCTATTCGACTTCTTCGCGAAAT
GTCGACAACGGGGATTAACCCGGGCCTGGTTGCTTACAACAACGCCGTTA
GATCCTGTCGCAACAGCCAGCAGTGGGAGCTCGCTGTAAATCTGTTTAGG
GAGATGGTTGCAATCGGGGTAGAACCAAATACGGTCACTTACTCGATGGC
GATTGAGGCCTGTGCGCACAGCCGCCGCCTCGACGATGCGCTCGATTTAT
TATCGGAGATGAGAGAACTGGGTATGAATCCCGACTTGAATTCCTGGAAG
GCGGTCATGCGAGTGCTGGGTCGCGGCAAGCAATGGGAGCTTTCAATTGT
ATTCTTGAGGGACATGTCGGCCGCCGGGAACGACCCAAGCGTGCATTGCT
TCAACGCAGCCATCGCCGCGTGTTGTAAAAAGTCGGAGTGGGAGATGGCC
GTAGCTCTGTTGCGAGAGATGAAGGTCATAGGCGTGACGCCAACCTTGAC
GACGTTCAGTCTGTGCATTTCCGCGTGCGAAAACGGGTCCGCGAGCGACC
AAGCGCTGTTGTTGCTGCGAGAGATGCAACGGGCAGGCATGACTCCTCGC
TTGGTCTCCTTCCATGCCGCTATTCACGCTTGCGCCAAAAATCTAGAGTA
CCAGCGTGCCATTGCCTTGCTGAGGGACATGCCCTCCGCCGGAGTGGAAC
CATCAATCGGAACGTACAACAGCGTCATCAAGGCCTGTGGCGAAGCCGGG
CGCTGGAGCGACGCCGTTAAACTGCTGAGAGAAGCGACGTCACTGAACCT
TTGCCCAACCGTGAGTACCTTCAATTCGGCGATTGTTGCTTGCGCCATCA
GCGGCCGGGGGGATGAGGCGGTCGATCTCTTGCATGAGATGTCGGCCATG
GATGGGATCTCGCCCTCAGTCGCTAGCTTCAGCTGGACGATCGCGGCCTT
TGCGCGAACGAGCCAGGTGGAGTGGACTGTATCTATTCTGAGTCAAGTCC
CCGTGGCGGGTATTGCTCCTGATAGCGTGAACCAACACGTCGCTGCTTGT
AACGTTCATGTTGATAGATGCCGGGAGCGTTTGGGAACAGTAACTAGAAA
TAGTGTGCAGTAAATGGCCTCCCAACACGGCTTCACCGTAACGAGAGGGC
TTCTGCTTCAGTCGTCTCGGCGCATCTCAAAGACTGCCGCAAAGACTGCC
GAACTTTGCCGCTACACGTGGTCACCGGCCTGTTACGGTTTCCACTCCTC
GTCTTGGTACGCCGACGCTGACGAAATAATCGACGTCGTTTCTACGACCG
GTGGACCCGAAAAAAATATATATACCAGTACGAAGCCGGAGAAGATAAAA
CAGCCTCAGCAACGACAGCGATCGGGCTCAAGGTGGCCGCTTACGTCGAT
TCGCTCTCCTCTTCAGCGCGCCGGAATGCGTGATCAGGTTTCCGGTTCGT
GGCGTCGGGCCGCCGAGGTGGATGCGGCAACAGAGGTGGATAACAAAAAT
AATTGGGTTTCCACTGCTCGCAAAGATATATTTGACCAGGGCACGGCTAG
GCAAGAAGGGGCGGAGGAATGGACGATGGCCTATCGCCACCGGCGGAAAA
CTGGGGTGGTGGTTGGTGCAAGAACCGTGAGAGTAGTTACTTCGGAGCCG
GAAAACACTCAAGAAAAGAGCATGGAGATTTACGCGACATTGCGCACCTC
GGCTCAGAACGGAACGTGGCAAACTGCGCTCGGTCTCATCACGCAGATGA
AGAACGAAGGGTTGAAGCCCGATGTGCGAATGGTGACGATGGCGATAACC
GCCTGTTCAAAGGATGGGAGGTGGGAGGAGGCACTTCAATTGCTCAGGGA
CATGCCTCAGATGGGGACCGAGCCCAACGTCGTGACGTACAACGCATGCA
TACACGCGTGTGCGAGGGGGGGGCAGTCGGAGATCTCCGTGGAGCTTCTG
AGAGAGATGGCGCAAGCGGGGCTAGCCCCGGATGTCATCAGCTATTCGGC
CGCGATAGGCGCGTGCGCCAACGATAAAAAATTTCGTCAAGCTATTCGAC
TTCTTCGCGAAATGTCGACAACGGGGATTAACCCGGGCCTGGTTGCTTAC
AACAACGCCGTTAGATCCTGTCGCAACAGCCAGCAGTGGGAGCTCGCTGT
AAATCTGTTTAGGGAGATGGTTGCAATCGGGGTAGAACCAAATACGGTCA
CTTACTCGATGGCGATTGAGGCCTGTGCGCACAGCCGCCGCCTCGACGAT
GCGCTCGATTTATTATCGGAGATGAGAGAACTGGGTATGAATCCCGACTT
GAATTCCTGGAAGGCGGTCATGCGAGTGCTGGGTCGCGGCAAGCAATGGG
AGCTTTCAATTGTATTCTTGAGGGACATGTCGGCCGCCGGGAACGACCCA
AGCGTGCATTGCTTCAACGCAGCCATCGCCGCGTGTTGTAAAAAGTCGGA
GTGGGAGATGGCCGTAGCTCTGTTGCGAGAGATGAAGGTCATAGGCGTGA
CGCCAACCTTGACGACGTTCAGTCTGTGCATTTCCGCGTGCGAAAACGGG
TCCGCGAGCGACCAAGCGCTGTTGTTGCTGCGAGAGATGCAACGGGCAGG
CATGACTCCTCGCTTGGTCTCCTTCCATGCCGCTATTCACGCTTGCGCCA
AAAATCTAGAGTACCAGCGTGCCATTGCCTTGCTGAGGGACATGCCCTCC
GCCGGAGTGGAACCATCAATCGGAACGTACAACAGCGTCATCAAGGCCTG
TGGCGAAGCCGGGCGCTGGAGCGACGCCGTTAAACTGCTGAGAGAAGCGA
CGTCACTGAACCTTTGCCCAACCGTGAGTACCTTCAATTCGGCGATTGTT
GCTTGCGCCATCAGCGGCCGGGGGGATGAGGCGGTCGATCTCTTGCATGA
GATGTCGGCCATGGATGGGATCTCGCCCTCAGTCGCTAGCTTCAGCTGGA
CGATCGCGGCCTTTGCGCGAACGAGCCAGGTGGAGTGGACTGTATCTATT
CTGAGTCAAGTCCCCGTGGCGGGTATTGCTCCTGATAGCGTGAACCAACA
CGTCGCTGCTTGTAACGTTCATGTTGATAGATGCCGGGAGCGTTTGGGAA
CAGTAACTAGAAATAGTGTGCAGTAA
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