prot_H-elongata_contig15262.3476.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15262.3476.1
Unique Nameprot_H-elongata_contig15262.3476.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length671
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15262.3476.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 168..305
e-value: 6.7E-34
score: 118.8
coord: 566..658
e-value: 2.1E-11
score: 45.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 306..430
e-value: 2.3E-30
score: 108.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 444..565
e-value: 2.2E-29
score: 105.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 324..372
e-value: 1.0E-8
score: 35.2
coord: 429..476
e-value: 1.1E-9
score: 38.3
coord: 254..302
e-value: 3.8E-11
score: 43.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 225..251
e-value: 2.8E-4
score: 20.9
coord: 572..598
e-value: 8.4E-4
score: 19.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 488..548
e-value: 1.2E-10
score: 41.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 573..606
e-value: 1.0E-4
score: 20.2
coord: 327..361
e-value: 0.0032
score: 15.5
coord: 257..291
e-value: 1.2E-5
score: 23.1
coord: 292..324
e-value: 2.6E-4
score: 19.0
coord: 538..570
e-value: 1.7E-6
score: 25.9
coord: 502..535
e-value: 7.7E-4
score: 17.5
coord: 433..462
e-value: 9.2E-5
score: 20.4
coord: 225..256
e-value: 4.7E-6
score: 24.4
coord: 362..395
e-value: 1.8E-7
score: 28.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 395..429
score: 8.32
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 606..640
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 185..219
score: 6.697
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 360..394
score: 12.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 430..464
score: 10.852
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 290..324
score: 10.874
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 220..254
score: 11.148
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 325..359
score: 9.953
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 11.74
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 465..499
score: 8.572
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 500..534
score: 9.273
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 570..605
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 535..569
score: 10.939
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 197..478
NoneNo IPR availablePANTHERPTHR46128:SF10coord: 475..643
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 475..643
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 355..547
NoneNo IPR availablePANTHERPTHR46128:SF10coord: 355..547
coord: 197..478

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15262contigH-elongata_contig15262:314..2326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15262.3476.1mRNA_H-elongata_contig15262.3476.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15262 265..2492 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15262.3476.1 ID=prot_H-elongata_contig15262.3476.1|Name=mRNA_H-elongata_contig15262.3476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=671bp
MASQHGFTVTRGLLLQSSRRISKTAAKTAELCRYTWSPACYGFHSSSWYA
DADEIIDVVSTTGGPEKNIYTSTKPEKIKQPQQRQRSGSRWPLTSIRSPL
QRAGMRDQVSGSWRRAAEVDAATEVDNKNNWVSTARKDIFDQGTARQEGA
EEWTMAYRHRRKTGVVVGARTVRVVTSEPENTQEKSMEIYATLRTSAQNG
TWQTALGLITQMKNEGLKPDVRMVTMAITACSKDGRWEEALQLLRDMPQM
GTEPNVVTYNACIHACARGGQSEISVELLREMAQAGLAPDVISYSAAIGA
CANDKKFRQAIRLLREMSTTGINPGLVAYNNAVRSCRNSQQWELAVNLFR
EMVAIGVEPNTVTYSMAIEACAHSRRLDDALDLLSEMRELGMNPDLNSWK
AVMRVLGRGKQWELSIVFLRDMSAAGNDPSVHCFNAAIAACCKKSEWEMA
VALLREMKVIGVTPTLTTFSLCISACENGSASDQALLLLREMQRAGMTPR
LVSFHAAIHACAKNLEYQRAIALLRDMPSAGVEPSIGTYNSVIKACGEAG
RWSDAVKLLREATSLNLCPTVSTFNSAIVACAISGRGDEAVDLLHEMSAM
DGISPSVASFSWTIAAFARTSQVEWTVSILSQVPVAGIAPDSVNQHVAAC
NVHVDRCRERLGTVTRNSVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat