mRNA_H-elongata_contig1525.3466.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI) HSP 1 Score: 497 bits (1280), Expect = 1.750e-169 Identity = 236/275 (85.82%), Postives = 247/275 (89.82%), Query Frame = 1
Query: 1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWS-NGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
QV MW L Q G+ GQQ+G HDAAVKTVRFIPE+NLVASASWDRTVKFWD RTSTP+AVV L ERAYSMDT+GAMMVVATADRKICVYNLGSW+ NGPAPQT TDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYF+EQAAKQ A+SGYKP TY K FAFKCHR+ G QS+VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQG I VCKFSPDGGLFGYA+SYDWSQGVEHANPQ TNNI VH V DDEIKPRPKDKK
Sbjct: 92 QVNMWSLGQPGTTGQQIGVHDAAVKTVRFIPEMNLVASASWDRTVKFWDTRTSTPAAVVTLCERAYSMDTKGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPATTYGNTKLSFAFKCHRVAGAQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 366
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A835ZCU3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU3_9STRA) HSP 1 Score: 292 bits (748), Expect = 1.280e-89 Identity = 146/277 (52.71%), Postives = 186/277 (67.15%), Query Frame = 1
Query: 4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLT----GTQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
VK W L AG +G HDA V+ + +IP ++L+A+ SWD+T++FWD++ P + LSER Y ++ R +VV TADRK VYNLG+ ++ +S L+YQTRC +IFPDQ G+AVGSIEGRV IEYF+E + +G +Q K+GFAFKCHR T +Q+ V+S+NSIAFH YGTFATAGSDG F+FWDKDSRQRLK + KQ I FSPDG L+ YA+SYDWSQGV A P + I +HVV DDEIKPR K +K
Sbjct: 99 VKAWDLQGAGHPSMDIGKHDAPVRKMAWIPSMSLLATGSWDKTIRFWDMKQPNPVHTMTLSERVYDLEVRDNWLVVCTADRKNSVYNLGA---NCKLESVAESTLKYQTRCAAIFPDQTGYAVGSIEGRVAIEYFSELPNE----TGVPRALPASQTKRGFAFKCHRETLPQNKSQTGVFSINSIAFHPYGTFATAGSDGTFNFWDKDSRQRLKQFP-KQATTISTAAFSPDGSLYAYAVSYDWSQGVGGAQPGLPHEIKLHVVTDDEIKPRDKPRK 367
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: F0Y1R3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1R3_AURAN) HSP 1 Score: 264 bits (674), Expect = 8.330e-79 Identity = 137/277 (49.46%), Postives = 173/277 (62.45%), Query Frame = 1
Query: 4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSA-------VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
+MW L Q Q Q G HDA ++++ F+P L+ V + SWD+T+K WD+R TP+A V L ER YSMD +MVVATA+RK+CVY+L + +N P DSPL++QTRCV FPD++GFA+GSIEGRV I + + + A + FAFKCHR T A +Y+VN IAFH GTFATAGSDG F+FWDKDS+QRL A+ + PI FSP G L+ YALSYDWS+G E P N IM+H VQ DEI R K
Sbjct: 98 AQMWTLGQP--QAQTFGKHDAPIRSIHFVPALSCVFTGSWDKTIKCWDVRQPTPTASVQLPERCYSMDVAHPLMVVATAERKLCVYDLSN-ANWQRPYRVEDSPLKHQTRCVRCFPDREGFAIGSIEGRVAIHHVDAKDAHK-----------------NFAFKCHRDTQDGRAGQASTCNIYAVNDIAFHNLGTFATAGSDGVFNFWDKDSKQRLMAFK-RADRPISCAAFSPAGTLYAYALSYDWSRGSESHTPTDPNTIMLHKVQKDEITQRNK 353
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A8J2WTP8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTP8_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.800e-78 Identity = 136/277 (49.10%), Postives = 174/277 (62.82%), Query Frame = 1
Query: 4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSA-------VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
++MW L Q Q QQVG HDA +K + E N+V + WD++V+ WD RT P A + L ER Y+MD R ++VV TA+RK+C+Y+L S +N P DSPLR+QTRCV+ FPD++GFA+GSIEGRVGI + + + A + FAFKCHR T A +Y+VNSIAFH GTFATAGSDG +++WDKDS+QRL + K I FSP GGL+ YALSYDWS+G E +PQ N IM+H VQ DEI R K
Sbjct: 101 LQMWRLGQP--QAQQVGKHDAPIKHCFHVAETNVVLTGGWDKSVRAWDCRTPNPVATIPLPERCYAMDVRHPLLVVGTAERKVCIYDLSS-ANWQQPYRVEDSPLRHQTRCVAAFPDREGFAIGSIEGRVGIHHVDPKNAHR-----------------NFAFKCHRETQDARAGQTGLCNIYAVNSIAFHHLGTFATAGSDGVYNYWDKDSKQRLMQFK-KAAQTISTACFSPSGGLYAYALSYDWSRGSESHSPQIPNQIMIHRVQKDEITQRNK 356
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7R9XVW1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XVW1_9VIRI) HSP 1 Score: 257 bits (657), Expect = 1.670e-76 Identity = 133/274 (48.54%), Postives = 175/274 (63.87%), Query Frame = 1
Query: 1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKT-DSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKT-NNIMVHVVQDDEIKPRPK 813
Q K+W +A + Q VG HDA + ++ +I EL L+A+ SWD+TVK+WD R+ TP+ L ER Y+MD R ++MVVATA+R IC+ NL + P KT SPL+YQTRCVS FPDQ GF VGSIEGRV + + + +Q + F FKCHR + VY+VNSIAFH YGTFATAG+DG F+FWDKDS+QRLKA + PIP F+ DG ++ YA+SYDWS+G + PQ N++++H QD E+K R K
Sbjct: 93 QAKLWSVASGATTAQVVGQHDAPICSMAWIEELKLLATGSWDKTVKYWDTRSPTPAHTQQLPERCYAMDVRQSLMVVATAERHICIINLKT----PQQIYKTIQSPLKYQTRCVSCFPDQTGFLVGSIEGRVAVHHVED-----------------SQQGRNFTFKCHR---DNADVYAVNSIAFHPTYGTFATAGADGAFNFWDKDSKQRLKAMP-RANAPIPCGTFNRDGSIYAYAVSYDWSKGAQGHQPQVAKNHVLLHATQDSEVKSRQK 341
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7S4HJS6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HJS6_9EUKA) HSP 1 Score: 257 bits (657), Expect = 1.780e-76 Identity = 137/276 (49.64%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELN--LVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
K+W LA SQ QV AHD +K + ++ EL + ++SWDRTVK+WD +T PSA + L ERA+ MD R ++VVATADRKI V NL SN A DSPL+YQ+RCV+ FPDQQGF +GSIEGRV + + E+ + FAFKCHR +Y+VN I FH +GTFAT GSDG ++FWDKDSRQRLKA++ K + IPV F+ DG +F YA+SYDWS+G EH NP +TN++++H V + EIK R KK
Sbjct: 90 AKVWDLAT--SQATQVAAHDQPIKNISWVQELGGGCIVTSSWDRTVKYWDGKTPNPSATLQLPERAFCMDVRYPLLVVATADRKIIVVNL---SNPTAIFKAVDSPLKYQSRCVACFPDQQGFCLGSIEGRVAVHHVQERDVTK-----------------NFAFKCHR---ENQDIYAVNCITFHPTFGTFATTGSDGTYNFWDKDSRQRLKAFN-KASMAIPVGAFNRDGTIFAYAVSYDWSKGSEHYNP-RTNHLLLHSVPEAEIKSRATQKK 338
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A162B2F9_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162B2F9_DAUCS) HSP 1 Score: 254 bits (650), Expect = 1.900e-75 Identity = 133/276 (48.19%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQT---KTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNN-IMVHVVQDDEIKPRPK 813
QVKMW L+ +G Q VG HDAAVK + +IPE+NL+ + SWD+T+++WDLR P+ V L ER Y++ R +MVVATADR + VYNL + PQT + SPL+YQTRCV+ FPDQQGF VGSIEGRVG+ + ++ +Q + F FKCHR + +YSVN++ FH + TFATAGSDG F+FWDKDS+QRLKA K PIP F+ DG ++ YA+ YDWS+G E+ NP I +H Q+ E+K +P+
Sbjct: 91 QVKMWQLS-SGGQPVTVGMHDAAVKDLAWIPEINLLVTGSWDKTLRYWDLRQPNPAHVQALPERCYALTVRHPLMVVATADRNLIVYNLQN------PQTEFKRISSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDD-----------------SQQTKNFTFKCHR---DGNDIYSVNALNFHPVHHTFATAGSDGTFNFWDKDSKQRLKAMS-KCSNPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPSTAKTCIYLHATQEAEVKAKPR 338
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7R9WN19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN19_9STRA) HSP 1 Score: 251 bits (641), Expect = 2.050e-75 Identity = 127/272 (46.69%), Postives = 169/272 (62.13%), Query Frame = 1
Query: 7 KMWPLAQAGSQG--QQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFH-KYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
+MW L Q+ G QQ+GAHDA +K VR++P NLV S WDR +KFWD R+ P+ V+++ ER Y+MD R ++VVATA R + +Y++ P + +SPL+YQ+RCV+ FPD G+AVGSIEGRVGI+Y + T + FAFKCHR S VYSVN+IAF ++GTFAT G+DG +FWDK++RQRLKA+ I +F+ G LF YA SYDWS+G P N I +H D+EIKP+PK
Sbjct: 1 RMWQLGQSPPNGVAQQIGAHDAPIKGVRYLPNSNLVVSGGWDRKLKFWDTRSPNPAGVLDMPERIYAMDVRNTLLVVATAGRHLIMYDVSGAQ--PREHQRKESPLKYQSRCVTCFPDASGYAVGSIEGRVGIQYIQK-----------------TPNRDSFAFKCHRQ---DSGVYSVNAIAFQQRFGTFATVGADGVVNFWDKENRQRLKAF-AAINRTISCAEFNSPGNLFAYASSYDWSKGSSVYAPGTANEIYIHYTPDEEIKPKPK 249
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: UPI0010A475A9 (protein RAE1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A475A9) HSP 1 Score: 249 bits (637), Expect = 8.250e-75 Identity = 128/270 (47.41%), Postives = 167/270 (61.85%), Query Frame = 1
Query: 10 MWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNN-IMVHVVQDDEIKPRPK 813
MWPL +G Q V HD +K + +IPE+NL+A+ SWD+T+K+WD R S P L +R Y+M + +MVV TADR + V+NL N + SPLRYQTRCV+ FPDQQGF VGSIEGRVG+ + +E Q + F FKCHR + +YSVNS+ FH + TFATAGSDG F+FWDKDS+QRLKA + LPIP F+ DG +F YA+ YDWS+G E+ NP I +H+ QD E+K +P+
Sbjct: 1 MWPLL-SGGQPVPVAMHDGPIKEIAWIPEMNLLATGSWDKTLKYWDARQSNPVHTQQLPDRCYAMTVKYPLMVVGTADRNLVVFNL---QNPQTEYKRIQSPLRYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDE-----------------AQHNKNFTFKCHR---ENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMQ-RCSLPIPCSAFNNDGSIFAYAVCYDWSKGAENHNPAAAKTQIYLHLPQDAEVKAKPR 245
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7S3K4J4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4J4_9STRA) HSP 1 Score: 253 bits (647), Expect = 1.250e-74 Identity = 131/278 (47.12%), Postives = 171/278 (61.51%), Query Frame = 1
Query: 1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTG-------TQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
Q+ MW L Q +G H+A +K+V + E NL + WD ++ WD RT TP+A + L ER Y+M +MVV TA+RKI +Y+L S SN P +SPLR+QTRC++ FPD+ GFA+GSIEGRV I + N + A + FAFKCHR T T +Y+VNSI FHK+GTFATAGSDG ++FWDKDS+QRL A+ IP FSP G L+ YALSYDWS+G E+ NPQ N IM+H V+++EI+ R K
Sbjct: 110 QLHMWNLQT--QQTSVIGRHEAPIKSVHCVREFNLAVTGGWDNAIRCWDARTPTPAATITLPERCYAMAVNHPLMVVGTAERKILMYDL-SRSNWQQPMRFEESPLRHQTRCIATFPDRDGFAIGSIEGRVAIHHVNIKEAGR-----------------NFAFKCHRDTQENRVGQPTVCNIYAVNSIVFHKFGTFATAGSDGVYNFWDKDSKQRLMAFKAAPNT-IPCASFSPIGNLYAYALSYDWSRGSENYNPQTPNYIMLHHVKEEEIRQRKK 366 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1525.3466.1 >prot_H-elongata_contig1525.3466.1 ID=prot_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp MWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSback to top mRNA from alignment at H-elongata_contig1525:11985..16095- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1525.3466.1 ID=mRNA_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4111bp|location=Sequence derived from alignment at H-elongata_contig1525:11985..16095- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1525:11985..16095- >mRNA_H-elongata_contig1525.3466.1 ID=mRNA_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig1525:11985..16095- (Himanthalia elongata Himel1 dioecious)back to top |