mRNA_H-elongata_contig1525.3466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1525.3466.1
Unique NamemRNA_H-elongata_contig1525.3466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI)

HSP 1 Score: 497 bits (1280), Expect = 1.750e-169
Identity = 236/275 (85.82%), Postives = 247/275 (89.82%), Query Frame = 1
Query:    1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWS-NGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
            QV MW L Q G+ GQQ+G HDAAVKTVRFIPE+NLVASASWDRTVKFWD RTSTP+AVV L ERAYSMDT+GAMMVVATADRKICVYNLGSW+ NGPAPQT TDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYF+EQAAKQ A+SGYKP  TY   K  FAFKCHR+ G QS+VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQG  I VCKFSPDGGLFGYA+SYDWSQGVEHANPQ TNNI VH V DDEIKPRPKDKK
Sbjct:   92 QVNMWSLGQPGTTGQQIGVHDAAVKTVRFIPEMNLVASASWDRTVKFWDTRTSTPAAVVTLCERAYSMDTKGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPATTYGNTKLSFAFKCHRVAGAQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 366          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A835ZCU3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU3_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.280e-89
Identity = 146/277 (52.71%), Postives = 186/277 (67.15%), Query Frame = 1
Query:    4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLT----GTQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
            VK W L  AG     +G HDA V+ + +IP ++L+A+ SWD+T++FWD++   P   + LSER Y ++ R   +VV TADRK  VYNLG+       ++  +S L+YQTRC +IFPDQ G+AVGSIEGRV IEYF+E   +    +G       +Q K+GFAFKCHR T     +Q+ V+S+NSIAFH YGTFATAGSDG F+FWDKDSRQRLK +  KQ   I    FSPDG L+ YA+SYDWSQGV  A P   + I +HVV DDEIKPR K +K
Sbjct:   99 VKAWDLQGAGHPSMDIGKHDAPVRKMAWIPSMSLLATGSWDKTIRFWDMKQPNPVHTMTLSERVYDLEVRDNWLVVCTADRKNSVYNLGA---NCKLESVAESTLKYQTRCAAIFPDQTGYAVGSIEGRVAIEYFSELPNE----TGVPRALPASQTKRGFAFKCHRETLPQNKSQTGVFSINSIAFHPYGTFATAGSDGTFNFWDKDSRQRLKQFP-KQATTISTAAFSPDGSLYAYAVSYDWSQGVGGAQPGLPHEIKLHVVTDDEIKPRDKPRK 367          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: F0Y1R3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1R3_AURAN)

HSP 1 Score: 264 bits (674), Expect = 8.330e-79
Identity = 137/277 (49.46%), Postives = 173/277 (62.45%), Query Frame = 1
Query:    4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSA-------VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
             +MW L Q   Q Q  G HDA ++++ F+P L+ V + SWD+T+K WD+R  TP+A V L ER YSMD    +MVVATA+RK+CVY+L + +N   P    DSPL++QTRCV  FPD++GFA+GSIEGRV I + + + A +                  FAFKCHR T    A       +Y+VN IAFH  GTFATAGSDG F+FWDKDS+QRL A+  +   PI    FSP G L+ YALSYDWS+G E   P   N IM+H VQ DEI  R K
Sbjct:   98 AQMWTLGQP--QAQTFGKHDAPIRSIHFVPALSCVFTGSWDKTIKCWDVRQPTPTASVQLPERCYSMDVAHPLMVVATAERKLCVYDLSN-ANWQRPYRVEDSPLKHQTRCVRCFPDREGFAIGSIEGRVAIHHVDAKDAHK-----------------NFAFKCHRDTQDGRAGQASTCNIYAVNDIAFHNLGTFATAGSDGVFNFWDKDSKQRLMAFK-RADRPISCAAFSPAGTLYAYALSYDWSRGSESHTPTDPNTIMLHKVQKDEITQRNK 353          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A8J2WTP8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTP8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.800e-78
Identity = 136/277 (49.10%), Postives = 174/277 (62.82%), Query Frame = 1
Query:    4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSA-------VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
            ++MW L Q   Q QQVG HDA +K    + E N+V +  WD++V+ WD RT  P A + L ER Y+MD R  ++VV TA+RK+C+Y+L S +N   P    DSPLR+QTRCV+ FPD++GFA+GSIEGRVGI + + + A +                  FAFKCHR T    A       +Y+VNSIAFH  GTFATAGSDG +++WDKDS+QRL  +  K    I    FSP GGL+ YALSYDWS+G E  +PQ  N IM+H VQ DEI  R K
Sbjct:  101 LQMWRLGQP--QAQQVGKHDAPIKHCFHVAETNVVLTGGWDKSVRAWDCRTPNPVATIPLPERCYAMDVRHPLLVVGTAERKVCIYDLSS-ANWQQPYRVEDSPLRHQTRCVAAFPDREGFAIGSIEGRVGIHHVDPKNAHR-----------------NFAFKCHRETQDARAGQTGLCNIYAVNSIAFHHLGTFATAGSDGVYNYWDKDSKQRLMQFK-KAAQTISTACFSPSGGLYAYALSYDWSRGSESHSPQIPNQIMIHRVQKDEITQRNK 356          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7R9XVW1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XVW1_9VIRI)

HSP 1 Score: 257 bits (657), Expect = 1.670e-76
Identity = 133/274 (48.54%), Postives = 175/274 (63.87%), Query Frame = 1
Query:    1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKT-DSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKT-NNIMVHVVQDDEIKPRPK 813
            Q K+W +A   +  Q VG HDA + ++ +I EL L+A+ SWD+TVK+WD R+ TP+    L ER Y+MD R ++MVVATA+R IC+ NL +    P    KT  SPL+YQTRCVS FPDQ GF VGSIEGRV + +  +                 +Q  + F FKCHR     + VY+VNSIAFH  YGTFATAG+DG F+FWDKDS+QRLKA   +   PIP   F+ DG ++ YA+SYDWS+G +   PQ   N++++H  QD E+K R K
Sbjct:   93 QAKLWSVASGATTAQVVGQHDAPICSMAWIEELKLLATGSWDKTVKYWDTRSPTPAHTQQLPERCYAMDVRQSLMVVATAERHICIINLKT----PQQIYKTIQSPLKYQTRCVSCFPDQTGFLVGSIEGRVAVHHVED-----------------SQQGRNFTFKCHR---DNADVYAVNSIAFHPTYGTFATAGADGAFNFWDKDSKQRLKAMP-RANAPIPCGTFNRDGSIYAYAVSYDWSKGAQGHQPQVAKNHVLLHATQDSEVKSRQK 341          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7S4HJS6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HJS6_9EUKA)

HSP 1 Score: 257 bits (657), Expect = 1.780e-76
Identity = 137/276 (49.64%), Postives = 177/276 (64.13%), Query Frame = 1
Query:    4 VKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELN--LVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPKDKK 822
             K+W LA   SQ  QV AHD  +K + ++ EL    + ++SWDRTVK+WD +T  PSA + L ERA+ MD R  ++VVATADRKI V NL   SN  A     DSPL+YQ+RCV+ FPDQQGF +GSIEGRV + +  E+   +                  FAFKCHR       +Y+VN I FH  +GTFAT GSDG ++FWDKDSRQRLKA++ K  + IPV  F+ DG +F YA+SYDWS+G EH NP +TN++++H V + EIK R   KK
Sbjct:   90 AKVWDLAT--SQATQVAAHDQPIKNISWVQELGGGCIVTSSWDRTVKYWDGKTPNPSATLQLPERAFCMDVRYPLLVVATADRKIIVVNL---SNPTAIFKAVDSPLKYQSRCVACFPDQQGFCLGSIEGRVAVHHVQERDVTK-----------------NFAFKCHR---ENQDIYAVNCITFHPTFGTFATTGSDGTYNFWDKDSRQRLKAFN-KASMAIPVGAFNRDGTIFAYAVSYDWSKGSEHYNP-RTNHLLLHSVPEAEIKSRATQKK 338          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A162B2F9_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162B2F9_DAUCS)

HSP 1 Score: 254 bits (650), Expect = 1.900e-75
Identity = 133/276 (48.19%), Postives = 177/276 (64.13%), Query Frame = 1
Query:    1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQT---KTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNN-IMVHVVQDDEIKPRPK 813
            QVKMW L+ +G Q   VG HDAAVK + +IPE+NL+ + SWD+T+++WDLR   P+ V  L ER Y++  R  +MVVATADR + VYNL +      PQT   +  SPL+YQTRCV+ FPDQQGF VGSIEGRVG+ + ++                 +Q  + F FKCHR     + +YSVN++ FH  + TFATAGSDG F+FWDKDS+QRLKA   K   PIP   F+ DG ++ YA+ YDWS+G E+ NP      I +H  Q+ E+K +P+
Sbjct:   91 QVKMWQLS-SGGQPVTVGMHDAAVKDLAWIPEINLLVTGSWDKTLRYWDLRQPNPAHVQALPERCYALTVRHPLMVVATADRNLIVYNLQN------PQTEFKRISSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDD-----------------SQQTKNFTFKCHR---DGNDIYSVNALNFHPVHHTFATAGSDGTFNFWDKDSKQRLKAMS-KCSNPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPSTAKTCIYLHATQEAEVKAKPR 338          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7R9WN19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN19_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.050e-75
Identity = 127/272 (46.69%), Postives = 169/272 (62.13%), Query Frame = 1
Query:    7 KMWPLAQAGSQG--QQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFH-KYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
            +MW L Q+   G  QQ+GAHDA +K VR++P  NLV S  WDR +KFWD R+  P+ V+++ ER Y+MD R  ++VVATA R + +Y++      P    + +SPL+YQ+RCV+ FPD  G+AVGSIEGRVGI+Y  +                 T  +  FAFKCHR     S VYSVN+IAF  ++GTFAT G+DG  +FWDK++RQRLKA+       I   +F+  G LF YA SYDWS+G     P   N I +H   D+EIKP+PK
Sbjct:    1 RMWQLGQSPPNGVAQQIGAHDAPIKGVRYLPNSNLVVSGGWDRKLKFWDTRSPNPAGVLDMPERIYAMDVRNTLLVVATAGRHLIMYDVSGAQ--PREHQRKESPLKYQSRCVTCFPDASGYAVGSIEGRVGIQYIQK-----------------TPNRDSFAFKCHRQ---DSGVYSVNAIAFQQRFGTFATVGADGVVNFWDKENRQRLKAF-AAINRTISCAEFNSPGNLFAYASSYDWSKGSSVYAPGTANEIYIHYTPDEEIKPKPK 249          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: UPI0010A475A9 (protein RAE1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A475A9)

HSP 1 Score: 249 bits (637), Expect = 8.250e-75
Identity = 128/270 (47.41%), Postives = 167/270 (61.85%), Query Frame = 1
Query:   10 MWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNN-IMVHVVQDDEIKPRPK 813
            MWPL  +G Q   V  HD  +K + +IPE+NL+A+ SWD+T+K+WD R S P     L +R Y+M  +  +MVV TADR + V+NL    N      +  SPLRYQTRCV+ FPDQQGF VGSIEGRVG+ + +E                  Q  + F FKCHR     + +YSVNS+ FH  + TFATAGSDG F+FWDKDS+QRLKA   +  LPIP   F+ DG +F YA+ YDWS+G E+ NP      I +H+ QD E+K +P+
Sbjct:    1 MWPLL-SGGQPVPVAMHDGPIKEIAWIPEMNLLATGSWDKTLKYWDARQSNPVHTQQLPDRCYAMTVKYPLMVVGTADRNLVVFNL---QNPQTEYKRIQSPLRYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDE-----------------AQHNKNFTFKCHR---ENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMQ-RCSLPIPCSAFNNDGSIFAYAVCYDWSKGAENHNPAAAKTQIYLHLPQDAEVKAKPR 245          
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Match: A0A7S3K4J4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4J4_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.250e-74
Identity = 131/278 (47.12%), Postives = 171/278 (61.51%), Query Frame = 1
Query:    1 QVKMWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTSTPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVGTYTQPKQGFAFKCHRLTG-------TQSAVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKTNNIMVHVVQDDEIKPRPK 813
            Q+ MW L     Q   +G H+A +K+V  + E NL  +  WD  ++ WD RT TP+A + L ER Y+M     +MVV TA+RKI +Y+L S SN   P    +SPLR+QTRC++ FPD+ GFA+GSIEGRV I + N + A +                  FAFKCHR T        T   +Y+VNSI FHK+GTFATAGSDG ++FWDKDS+QRL A+       IP   FSP G L+ YALSYDWS+G E+ NPQ  N IM+H V+++EI+ R K
Sbjct:  110 QLHMWNLQT--QQTSVIGRHEAPIKSVHCVREFNLAVTGGWDNAIRCWDARTPTPAATITLPERCYAMAVNHPLMVVGTAERKILMYDL-SRSNWQQPMRFEESPLRHQTRCIATFPDRDGFAIGSIEGRVAIHHVNIKEAGR-----------------NFAFKCHRDTQENRVGQPTVCNIYAVNSIVFHKFGTFATAGSDGVYNFWDKDSKQRLMAFKAAPNT-IPCASFSPIGNLYAYALSYDWSRGSENYNPQTPNYIMLHHVKEEEIRQRKK 366          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1525.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY0_ECTSI1.750e-16985.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCU3_9STRA1.280e-8952.71WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
F0Y1R3_AURAN8.330e-7949.46Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WTP8_9STRA1.800e-7849.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9XVW1_9VIRI1.670e-7648.54Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S4HJS6_9EUKA1.780e-7649.64Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A162B2F9_DAUCS1.900e-7548.19Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A7R9WN19_9STRA2.050e-7546.69Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
UPI0010A475A98.250e-7547.41protein RAE1-like n=1 Tax=Prosopis alba TaxID=2077... [more]
A0A7S3K4J4_9STRA1.250e-7447.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1525contigH-elongata_contig1525:11985..16095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.0
Seed ortholog evalue7.4e-136
Seed eggNOG ortholog2880.D7FSY0
Preferred nameRAE1
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
EggNOG free text desc.transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG0647@1,KOG0647@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_006770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size1975
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1525.3466.1prot_H-elongata_contig1525.3466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1525 13135..16086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.1353705-UTR-H-elongata_contig1525:11984..131341622929901.1353705-UTR-H-elongata_contig1525:11984..13134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1525 11985..13134 -
1691679200.9594223-UTR-H-elongata_contig1525:11984..131341691679200.9594223-UTR-H-elongata_contig1525:11984..13134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1525 11985..13134 -
1622929901.2466989-UTR-H-elongata_contig1525:16086..160951622929901.2466989-UTR-H-elongata_contig1525:16086..16095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1525 16087..16095 -
1691679201.041166-UTR-H-elongata_contig1525:16086..160951691679201.041166-UTR-H-elongata_contig1525:16086..16095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1525 16087..16095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.14886-CDS-H-elongata_contig1525:13134..132581622929901.14886-CDS-H-elongata_contig1525:13134..13258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 13135..13258 -
1691679200.9721751-CDS-H-elongata_contig1525:13134..132581691679200.9721751-CDS-H-elongata_contig1525:13134..13258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 13135..13258 -
1622929901.1622906-CDS-H-elongata_contig1525:13813..140041622929901.1622906-CDS-H-elongata_contig1525:13813..14004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 13814..14004 -
1691679200.9812653-CDS-H-elongata_contig1525:13813..140041691679200.9812653-CDS-H-elongata_contig1525:13813..14004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 13814..14004 -
1622929901.1877334-CDS-H-elongata_contig1525:14619..147971622929901.1877334-CDS-H-elongata_contig1525:14619..14797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 14620..14797 -
1691679200.9904284-CDS-H-elongata_contig1525:14619..147971691679200.9904284-CDS-H-elongata_contig1525:14619..14797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 14620..14797 -
1622929901.202704-CDS-H-elongata_contig1525:15167..152501622929901.202704-CDS-H-elongata_contig1525:15167..15250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15168..15250 -
1691679201.0002604-CDS-H-elongata_contig1525:15167..152501691679201.0002604-CDS-H-elongata_contig1525:15167..15250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15168..15250 -
1622929901.2186408-CDS-H-elongata_contig1525:15605..157321622929901.2186408-CDS-H-elongata_contig1525:15605..15732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15606..15732 -
1691679201.0101633-CDS-H-elongata_contig1525:15605..157321691679201.0101633-CDS-H-elongata_contig1525:15605..15732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15606..15732 -
1622929901.2310114-CDS-H-elongata_contig1525:15973..160861622929901.2310114-CDS-H-elongata_contig1525:15973..16086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15974..16086 -
1691679201.0290022-CDS-H-elongata_contig1525:15973..160861691679201.0290022-CDS-H-elongata_contig1525:15973..16086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1525 15974..16086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1525.3466.1

>prot_H-elongata_contig1525.3466.1 ID=prot_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
MWPLAQAGSQGQQVGAHDAAVKTVRFIPELNLVASASWDRTVKFWDLRTS
TPSAVVNLSERAYSMDTRGAMMVVATADRKICVYNLGSWSNGPAPQTKTD
SPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFNEQAAKQAASSGYKPVG
TYTQPKQGFAFKCHRLTGTQSAVYSVNSIAFHKYGTFATAGSDGNFHFWD
KDSRQRLKAYDLKQGLPIPVCKFSPDGGLFGYALSYDWSQGVEHANPQKT
NNIMVHVVQDDEIKPRPKDKK*
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mRNA from alignment at H-elongata_contig1525:11985..16095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1525.3466.1 ID=mRNA_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4111bp|location=Sequence derived from alignment at H-elongata_contig1525:11985..16095- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAGATGTGGCCGTTGGCCCAAGCAGGGAGCCAGGGGCAACAAGT TGGAGCGCACGACGCCGCCGTTAAAACTGTTCGTTTCATCCCGGAGCTCA ACCTCGTCGCGAGCGCATCGTGGTAAGAAGGCATCTAGGTTTTAAAAGTA ACCTGATACCAGTATAGTCTATACCCCCCTCTCCCTCCCCCCCTCCCCAT CCCCGTCGCCTGAAACTGCTGTCCATGTTTAGCCCGCTGGCTTTCTCTAG AACCCATTTATTTGCCTTACAACTCACGAGATGTATTTTGTCGCGAATGG AGGTTATGCCCTCCGGCTTTGACCCTTGATATGCTCGTCGGATGTGTGAT CCATCGCCTACAGGGATCGCACGGTGAAATTTTGGGACTTGCGAACGTCG ACCCCCTCCGCGGTGGTGAATCTTTCCGAGAGAGCCTACTCCATGGACAC GCGCGGGGCTATGATGGTTGTGGCCACCGCCGATAGGAAGGTTTGACCCG CCGCGGAACGTGAAATGGAATGGGGTTTGTATGTCTTGTTGCGTCCTATA GTGGGCTGACGTGACCGTCGATCATTCTTGGCTTCGCGCAGCCTATTTTG GATCATAGATCGTTCTCTTCTCTTTGGGATGAGAGTTATCGATGATGCTT TCGAGGTCTTCTTAGCACGGTCAAGGTAAAGGATCACCTTTCGGTAAAGG ATCACATCATCTTTCGGTAACATTGTGCGGACGGCTGGTTTTACGTTTCA TCTTTTGCTCAATAGCACAGCACCGCGACACTTTCATGTACTGTTTGCTG TATTTGGCTCCGATCTGTGTTTTTGTGGGATTTCCATGGACCCAGATTTG CGTGTACAACCTGGGAAGCTGGAGTAACGGCCCGGCGCCACAGACAAAGA CGGATTCTCCTCTCCGGTATCAGACCAGGTCGGCAGGTCGGCCTCACCAA TGCGGCACGGGTTTCTCTTCGATCTTCTGAATTTGGCGGTTTCATAAAGT TGTTGCGATATCGGCGTTAGCGACTGCGTAGTCGAGATTTTCAGAGAGGC GGGCAGAGGAGGTTACGTTCCCTAGTAGAGCCTCTCTGGTTTGAATCCTA AATGGGCGTTAGACGTGAATCCGACCTACCCTAGCTCGCTTGTCGAAGCC ATGTCCTGCCTCAAATCGCTTTGATCGATGCATTGGTTAATCCATTGCAC GCTGCCACGTGTAGAAAGAAACATGCAGCTCGTCGACCGCCCAACGATCG CGCCCTTATCATGTCTTGGATTAATTTCGGGTTTGCCACGTTGGTCAGAT GTGTTTCGATCTTCCCAGATCAGCAAGGCTTCGCGGTGGGTTCTATTGAG GGACGCGTGGGGATTGAGTACTTCAACGAGCAGGCGGCGAAACAGGCGGC GAGCAGCGGCTACAAGCCCGTCGGAACGTACACCCAGCCGAAGCAGGGCT TCGCGTTCAAGTGCCATCGCCTCACCGTGAGCCACCGCGCCGCACCGCCG CTTACTTGCGTGGTGTAGGATGCTGTCGAGGCTTTACTTCAGTGGTCTAC CGAAACATTGCCAGCTTCTTGCTCTGCGTGTTACATCGTTTAGCCCTATC TGACTGCGAGGCTGATTAGCGGGATCCGAAGCCTTGCTCGGATTGAAGCT CTAATATTGTGTATACACCGTACGGGCAGTTATGCAGTTTATGAATAGGC CATTACTCGCTGTAACGGGTATTATCGAAGGGTTTCGAGAGCCTTGCACC GGCGGTGACTTTTGGGGGGACCCAAGATTTGCTCGCAGCAACAAATACAC ATGTCGTACCAATTGTGAATGGGATAATGATACGACTTCGTCGAATGTAT ATATCTATGTGCGTACTAATGTATTCATGTTATTTCTATTATATGTGTAC TGTTTTTAAGGTTGAGCACCGTCGGTCAAAGAGGTACTCACGACGCAGAA GCACCGCTCATGGTATTCATTAAAAAGTTTCGGATAGGGTATTCCTAGCT TGCAGCAGCGCCTCCTGCTGATGCGGTATATCGTCCTCGTCACCCGCCGT AACTGACCCTACCTGCTGTCGTCAATGGGTGGCGCTGGCAGGGCACTCAA TCGGCGGTGTACTCGGTGAACTCCATCGCGTTCCACAAGTACGGGACGTT TGCTACAGCCGGGTCGGACGGAAACTTTCACTTTTGGGACAAGGACTCGA GACAGCGCCTCAAGGCGTATGACCTCAAGCAGGGCCTTCCCATTCCCGTC TGCAAGTTCAGTCCCGACGGAGGTCTCTTCGGGTGAGTGCCTCCCCATGC CCAGTTCTAGTAGATAGCTGAAAACGGTTGACGCCTTTGGTTTGATCACT CGTCGATCTGGTCTTGGCAAGGCAGGACAGGGCTGGGCAGGGCAAGGCTT TTCCCATTCATGGGACTAGAATGCTCTTGGATACTCCTGTCCGTCCGTAG AAGGATTGATCATATAGTCTACTCTACTAATACCATGCTGGATTGATGCC GTCAAGTGCTTCGTGCTCCCCTCTAGGATGTTGCTCGGTTGGCTTCTGTT CGGCGTAGAGCGAGAGCTGTGCACGTGCAGGCTTCCGATGTCTTCATGTA CTCATGTAGGGGTCTCGGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCGTCACCNNNNN NNNNNGCTGTCTCCTCTTTTTTTTTTCCTTTTCGGGGGTCCTCCCCCCCC CCCCCCCCCCCCCCTCCCTCCCATCCCCCACGTTCGACGTCTCGGCGTGG CAATTTTGGATATCTCGCCACTGTCGGGATGGGGCAGGTACGCTCTTAGC TACGACTGGTCTCAAGGGGTCGAGCACGCCAACCCCCAGAAGACAAACAA CATCATGGTGCACGTAGTACAAGATGACGAGATCAAGCCGAGGCCGAAGG ACAAGAAGTGACACTATATCACTGTGGTAGGGAGCTCCGCAAACTCTGAC TCTGTTCTCGACAAACTCGGGGTACGAAATATAGTACGAGTATGCTAACA CTTTTATATTATTGGTACTTTGGTGTGGTTCATCTCATCTAGACACCCAC CCCCCTCTCAACACATTGCTTGTTTCCTAGCACTATTAGTAGTTCTTGTG TGCGAGACGAACGATGGGGAACGATTCCACTTGAATTGTGTTGCACGCGC AGTACCATGCCATCGCGAAGTAGGCACCCTTCAAATGGGTGCCTTTGTGG CTATTAATAGTGCGTGCTCCAACCGGTGCGAACACAACGGGAAGGCCGAT TCGGCTTTGGCCAGGTACGTTTCCTCTCTGCCTACAGGATGTGTACTATG ACCACAGGATGTACGCCGAGGGAAGGTGCCATGTCCATGCCAAAGTGTAG CGTCGTTGACCATAGCAAGTGAGTCCGGAGTATTCGCTGCCGGGGAACAC GGCTTTAGTTTTGGTGGACATGGAGAATCTAGCCTTTGCACCCCTAAAAT TCCCGGAGTGTGTTTACACTCAAGAGAGCCATGTTGCTCTCGGCTTTGTG GAGCATAATGGTTCAAAGTCGGGAGATTGCACAAAAGAAGAAACGTTTGG ATCGATTTCGGTCTGTTGGCCCTGATTCACGCGAAGACATTGGTTTTTAT ACTGAAGCTAGATGACATGAGCGACAGAGGGGCGAAAGAGTGTAGCCTGC GCGTTGAAGAAAGGAATATTTCTGGATGGGAGATATTTTGGTCGGGGATA AGTCGGGCACGATCGATTATCTGGGAGAAAAAACATCCAAGCATAAAAAA ATGTTGAGCTATTCATGAGCACGCGAGGTTATTGGACCGTTTTACTGTAA CTATATACGGAAATGTATATTAATAGTTAAGTCATAGTTCGGGTATCTTT ATGAACGATTGTTATGGACTTGTTCATCAACTGGGAGGCGGGCCAGAGGT TTCGCAATAGACATTCCAATGCTCGCCACCATGTATGCTATTGCGTACTC ACGTCCACAGTATCCATAGACTCCGCCGCCAGAGAGCCTTTGTATGAAGC GCAAATATCTGTCCTTGTGAAGCGAAAGTCTAGTCTACAGGATAAAGTCC CCACGAGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1525:11985..16095-

>mRNA_H-elongata_contig1525.3466.1 ID=mRNA_H-elongata_contig1525.3466.1|Name=mRNA_H-elongata_contig1525.3466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig1525:11985..16095- (Himanthalia elongata Himel1 dioecious)
ATGTGGCCGTTGGCCCAAGCAGGGAGCCAGGGGCAACAAGTTGGAGCGCA
CGACGCCGCCGTTAAAACTGTTCGTTTCATCCCGGAGCTCAACCTCGTCG
CGAGCGCATCGTGATGTGGCCGTTGGCCCAAGCAGGGAGCCAGGGGCAAC
AAGTTGGAGCGCACGACGCCGCCGTTAAAACTGTTCGTTTCATCCCGGAG
CTCAACCTCGTCGCGAGCGCATCGTGGGATCGCACGGTGAAATTTTGGGA
CTTGCGAACGTCGACCCCCTCCGCGGTGGTGAATCTTTCCGAGAGAGCCT
ACTCCATGGACACGCGCGGGGCTATGATGGTTGTGGCCACCGCCGATAGG
AAGGGATCGCACGGTGAAATTTTGGGACTTGCGAACGTCGACCCCCTCCG
CGGTGGTGAATCTTTCCGAGAGAGCCTACTCCATGGACACGCGCGGGGCT
ATGATGGTTGTGGCCACCGCCGATAGGAAGATTTGCGTGTACAACCTGGG
AAGCTGGAGTAACGGCCCGGCGCCACAGACAAAGACGGATTCTCCTCTCC
GGTATCAGACCAGATTTGCGTGTACAACCTGGGAAGCTGGAGTAACGGCC
CGGCGCCACAGACAAAGACGGATTCTCCTCTCCGGTATCAGACCAGATGT
GTTTCGATCTTCCCAGATCAGCAAGGCTTCGCGGTGGGTTCTATTGAGGG
ACGCGTGGGGATTGAGTACTTCAACGAGCAGGCGGCGAAACAGGCGGCGA
GCAGCGGCTACAAGCCCGTCGGAACGTACACCCAGCCGAAGCAGGGCTTC
GCGTTCAAGTGCCATCGCCTCACCATGTGTTTCGATCTTCCCAGATCAGC
AAGGCTTCGCGGTGGGTTCTATTGAGGGACGCGTGGGGATTGAGTACTTC
AACGAGCAGGCGGCGAAACAGGCGGCGAGCAGCGGCTACAAGCCCGTCGG
AACGTACACCCAGCCGAAGCAGGGCTTCGCGTTCAAGTGCCATCGCCTCA
CCGGCACTCAATCGGCGGTGTACTCGGTGAACTCCATCGCGTTCCACAAG
TACGGGACGTTTGCTACAGCCGGGTCGGACGGAAACTTTCACTTTTGGGA
CAAGGACTCGAGACAGCGCCTCAAGGCGTATGACCTCAAGCAGGGCCTTC
CCATTCCCGTCTGCAAGTTCAGTCCCGACGGAGGTCTCTTCGGGGCACTC
AATCGGCGGTGTACTCGGTGAACTCCATCGCGTTCCACAAGTACGGGACG
TTTGCTACAGCCGGGTCGGACGGAAACTTTCACTTTTGGGACAAGGACTC
GAGACAGCGCCTCAAGGCGTATGACCTCAAGCAGGGCCTTCCCATTCCCG
TCTGCAAGTTCAGTCCCGACGGAGGTCTCTTCGGGTACGCTCTTAGCTAC
GACTGGTCTCAAGGGGTCGAGCACGCCAACCCCCAGAAGACAAACAACAT
CATGGTGCACGTAGTACAAGATGACGAGATCAAGCCGAGGCCGAAGGACA
AGAAGTGAGTACGCTCTTAGCTACGACTGGTCTCAAGGGGTCGAGCACGC
CAACCCCCAGAAGACAAACAACATCATGGTGCACGTAGTACAAGATGACG
AGATCAAGCCGAGGCCGAAGGACAAGAAGTGA
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