mRNA_H-elongata_contig152461.3462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152461.3462.1
Unique NamemRNA_H-elongata_contig152461.3462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: D8LTL4_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL4_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.450e-29
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVPMV 258
            CS+S +  +S++ LA+ ++  M FL+VV QCLVAT++VE VRR+G+A YDPFNF TARRWLPVS+CFSAMLFTSFKAL +MNVPMV
Sbjct:   36 CSVSMV--MSNKLLAFTYKSDMAFLVVVGQCLVATILVEAVRRMGYASYDPFNFSTARRWLPVSICFSAMLFTSFKALEVMNVPMV 119          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A1S7HUV8_9SACH (GDP-mannose transporter n=3 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A1S7HUV8_9SACH)

HSP 1 Score: 58.9 bits (141), Expect = 3.060e-8
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            C  S +  ++++ +    +  M F+++V+QCLV T+++ V++ LG+AK+ P N    + WLP+S+    M++TS KAL ++ VP
Sbjct:   27 CCSSILMTVTNKFVVNKNDFNMFFIMLVVQCLVCTMVLVVLKGLGYAKFRPLNKTDIKSWLPISVLLVLMIYTSSKALNLLAVP 110          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A4C2EAD5_9SACH (GDP-mannose transporter n=4 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A4C2EAD5_9SACH)

HSP 1 Score: 58.5 bits (140), Expect = 4.200e-8
Identity = 29/84 (34.52%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            C  S +  ++++ +    +  M F+++V+QCLV T+++ V++ LG+AK+ P N    + WLP+S     M++TS KAL ++ VP
Sbjct:   27 CCSSILMTVTNKFVVNKKDFNMFFVMLVVQCLVCTLVLVVLKGLGYAKFRPLNKTDIKNWLPISFLLVLMIYTSSKALNLLPVP 110          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: Q9BIR6_LEIMA (Lipophosphoglycan biosynthetic protein n=10 Tax=Leishmania TaxID=38568 RepID=Q9BIR6_LEIMA)

HSP 1 Score: 55.1 bits (131), Expect = 7.050e-7
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNV 249
            CS+S I  + ++ +   +++   F ++V+Q   A VIV + +   F +Y  F+F  A++WLP++L F AMLFTS K+LA M+V
Sbjct:   20 CSVSMI--LVNKLIMNTYDMNFPFGILVLQTGGALVIVALAKAARFVEYPAFSFDVAKKWLPLTLLFVAMLFTSMKSLATMSV 100          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: GMT1_VANPO (GDP-mannose transporter 1 n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=GMT1_VANPO)

HSP 1 Score: 53.9 bits (128), Expect = 1.790e-6
Identity = 26/84 (30.95%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            C+ S +  ++++ +    +  M F+++ +Q  V T+++ +++ LG+AK+ PFN   A+ W P+S+    M++TS KAL  + VP
Sbjct:   27 CASSILMTVTNKFVVNLKDFNMNFVMLFVQSFVCTLLLVILKTLGYAKFRPFNKTDAKNWFPISVLLVIMIYTSSKALQFLAVP 110          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A1E5R1K1_9ASCO (GDP-mannose transporter n=1 Tax=Hanseniaspora osmophila TaxID=56408 RepID=A0A1E5R1K1_9ASCO)

HSP 1 Score: 52.0 bits (123), Expect = 8.670e-6
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   49 NFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            NF   M F+++ +QC V T+++ V++ LG+AK+   N   A+ WLP+S+    M++TS KAL  + VP
Sbjct:   46 NFN--MNFVMLFVQCTVCTLLLVVLKLLGYAKFRSLNKTDAKNWLPISVLLVLMIYTSSKALQFLPVP 111          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: G8BTX2_TETPH (GDP-mannose transporter n=1 Tax=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) TaxID=1071381 RepID=G8BTX2_TETPH)

HSP 1 Score: 50.8 bits (120), Expect = 2.220e-5
Identity = 26/84 (30.95%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            C  S +  ++++ +       M F+++ +Q  V T+++ V++ LG+AK+  FN   A+ WLP+S     M++TS KAL  + +P
Sbjct:   28 CLSSILMTVTNKFVVNGANFNMNFVMLFVQSAVCTLLLIVLKTLGYAKFRAFNKTDAKNWLPISFLLVLMIYTSSKALQFLAIP 111          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A640KSM1_LEITA (Lipophosphoglycan biosynthetic protein (Lpg2) n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KSM1_LEITA)

HSP 1 Score: 50.4 bits (119), Expect = 3.040e-5
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNV 249
            CS+S I  + ++ +   F++     ++V+Q   A VIV + +   F +Y  F+ + A++WLP++L F AMLFTS K+L  M+V
Sbjct:   20 CSVSMI--LVNKLIMNTFDMNFPLGILVLQSGGAVVIVTLAKAARFIEYPAFSLEVAKQWLPLTLLFVAMLFTSMKSLGTMSV 100          
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: J7RG40_KAZNA (GDP-mannose transporter n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7RG40_KAZNA)

HSP 1 Score: 50.1 bits (118), Expect = 4.150e-5
Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
            C  S +  ++++ +       M F+++ +Q LV T+++ V+R LG+AK+   N   A+ W P+S+    M++TS KAL  + VP
Sbjct:   28 CGSSILMTVTNKFVVNLENFNMNFVMLFVQSLVCTLLLVVLRLLGYAKFRSLNKTDAKNWFPISVLLVLMIYTSSKALQFLAVP 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LTL4_ECTSI2.450e-2967.44TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A1S7HUV8_9SACH3.060e-834.52GDP-mannose transporter n=3 Tax=Zygosaccharomyces ... [more]
A0A4C2EAD5_9SACH4.200e-834.52GDP-mannose transporter n=4 Tax=Zygosaccharomyces ... [more]
Q9BIR6_LEIMA7.050e-738.55Lipophosphoglycan biosynthetic protein n=10 Tax=Le... [more]
GMT1_VANPO1.790e-630.95GDP-mannose transporter 1 n=1 Tax=Vanderwaltozyma ... [more]
A0A1E5R1K1_9ASCO8.670e-639.71GDP-mannose transporter n=1 Tax=Hanseniaspora osmo... [more]
G8BTX2_TETPH2.220e-530.95GDP-mannose transporter n=1 Tax=Tetrapisispora pha... [more]
A0A640KSM1_LEITA3.040e-536.14Lipophosphoglycan biosynthetic protein (Lpg2) n=1 ... [more]
J7RG40_KAZNA4.150e-532.14GDP-mannose transporter n=1 Tax=Kazachstania nagan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152461contigH-elongata_contig152461:1226..1483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.4e-24
Seed eggNOG ortholog2880.D8LTL4
Preferred nameVRG4
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
EggNOG free text desc.nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG5070@1,KOG1444@2759
EC2.1.1.310
COG Functional cat.GOU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03009
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-28_003670.1
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.89966-CDS-H-elongata_contig152461:1225..14831622929900.89966-CDS-H-elongata_contig152461:1225..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152461 1226..1483 -
1691679200.9063208-CDS-H-elongata_contig152461:1225..14831691679200.9063208-CDS-H-elongata_contig152461:1225..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152461 1226..1483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152461.3462.1prot_H-elongata_contig152461.3462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152461 1226..1483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152461.3462.1

>prot_H-elongata_contig152461.3462.1 ID=prot_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYD
PFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVPMV
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mRNA from alignment at H-elongata_contig152461:1226..1483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152461.3462.1 ID=mRNA_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig152461:1226..1483- (Himanthalia elongata Himel1 dioecious)
TGCTCTATTTCCCCTATCCCCTTTATTTCCTCGCAGGCGTTAGCGTACAA TTTCGAGGTAAAGATGACTTTCCTTCTGGTGGTGATGCAGTGCCTGGTGG CAACGGTCATCGTTGAGGTGGTGCGACGGCTGGGGTTCGCCAAGTACGAC CCTTTTAACTTTAAGACGGCGAGGAGATGGCTTCCCGTCAGTTTGTGCTT CAGCGCCATGCTCTTCACGAGCTTCAAGGCTCTAGCGATCATGAACGTGC CCATGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig152461:1226..1483-

>mRNA_H-elongata_contig152461.3462.1 ID=mRNA_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig152461:1226..1483- (Himanthalia elongata Himel1 dioecious)
TGCTCTATTTCCCCTATCCCCTTTATTTCCTCGCAGGCGTTAGCGTACAA
TTTCGAGGTAAAGATGACTTTCCTTCTGGTGGTGATGCAGTGCCTGGTGG
CAACGGTCATCGTTGAGGTGGTGCGACGGCTGGGGTTCGCCAAGTACGAC
CCTTTTAACTTTAAGACGGCGAGGAGATGGCTTCCCGTCAGTTTGTGCTT
CAGCGCCATGCTCTTCACGAGCTTCAAGGCTCTAGCGATCATGAACGTGC
CCATGGTGTGCTCTATTTCCCCTATCCCCTTTATTTCCTCGCAGGCGTTA
GCGTACAATTTCGAGGTAAAGATGACTTTCCTTCTGGTGGTGATGCAGTG
CCTGGTGGCAACGGTCATCGTTGAGGTGGTGCGACGGCTGGGGTTCGCCA
AGTACGACCCTTTTAACTTTAAGACGGCGAGGAGATGGCTTCCCGTCAGT
TTGTGCTTCAGCGCCATGCTCTTCACGAGCTTCAAGGCTCTAGCGATCAT
GAACGTGCCCATGGTG
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