mRNA_H-elongata_contig152461.3462.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: D8LTL4_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL4_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.450e-29 Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVPMV 258
CS+S + +S++ LA+ ++ M FL+VV QCLVAT++VE VRR+G+A YDPFNF TARRWLPVS+CFSAMLFTSFKAL +MNVPMV
Sbjct: 36 CSVSMV--MSNKLLAFTYKSDMAFLVVVGQCLVATILVEAVRRMGYASYDPFNFSTARRWLPVSICFSAMLFTSFKALEVMNVPMV 119
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A1S7HUV8_9SACH (GDP-mannose transporter n=3 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A1S7HUV8_9SACH) HSP 1 Score: 58.9 bits (141), Expect = 3.060e-8 Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
C S + ++++ + + M F+++V+QCLV T+++ V++ LG+AK+ P N + WLP+S+ M++TS KAL ++ VP
Sbjct: 27 CCSSILMTVTNKFVVNKNDFNMFFIMLVVQCLVCTMVLVVLKGLGYAKFRPLNKTDIKSWLPISVLLVLMIYTSSKALNLLAVP 110
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A4C2EAD5_9SACH (GDP-mannose transporter n=4 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A4C2EAD5_9SACH) HSP 1 Score: 58.5 bits (140), Expect = 4.200e-8 Identity = 29/84 (34.52%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
C S + ++++ + + M F+++V+QCLV T+++ V++ LG+AK+ P N + WLP+S M++TS KAL ++ VP
Sbjct: 27 CCSSILMTVTNKFVVNKKDFNMFFVMLVVQCLVCTLVLVVLKGLGYAKFRPLNKTDIKNWLPISFLLVLMIYTSSKALNLLPVP 110
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: Q9BIR6_LEIMA (Lipophosphoglycan biosynthetic protein n=10 Tax=Leishmania TaxID=38568 RepID=Q9BIR6_LEIMA) HSP 1 Score: 55.1 bits (131), Expect = 7.050e-7 Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNV 249
CS+S I + ++ + +++ F ++V+Q A VIV + + F +Y F+F A++WLP++L F AMLFTS K+LA M+V
Sbjct: 20 CSVSMI--LVNKLIMNTYDMNFPFGILVLQTGGALVIVALAKAARFVEYPAFSFDVAKKWLPLTLLFVAMLFTSMKSLATMSV 100
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: GMT1_VANPO (GDP-mannose transporter 1 n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=GMT1_VANPO) HSP 1 Score: 53.9 bits (128), Expect = 1.790e-6 Identity = 26/84 (30.95%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
C+ S + ++++ + + M F+++ +Q V T+++ +++ LG+AK+ PFN A+ W P+S+ M++TS KAL + VP
Sbjct: 27 CASSILMTVTNKFVVNLKDFNMNFVMLFVQSFVCTLLLVILKTLGYAKFRPFNKTDAKNWFPISVLLVIMIYTSSKALQFLAVP 110
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A1E5R1K1_9ASCO (GDP-mannose transporter n=1 Tax=Hanseniaspora osmophila TaxID=56408 RepID=A0A1E5R1K1_9ASCO) HSP 1 Score: 52.0 bits (123), Expect = 8.670e-6 Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 49 NFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
NF M F+++ +QC V T+++ V++ LG+AK+ N A+ WLP+S+ M++TS KAL + VP
Sbjct: 46 NFN--MNFVMLFVQCTVCTLLLVVLKLLGYAKFRSLNKTDAKNWLPISVLLVLMIYTSSKALQFLPVP 111
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: G8BTX2_TETPH (GDP-mannose transporter n=1 Tax=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) TaxID=1071381 RepID=G8BTX2_TETPH) HSP 1 Score: 50.8 bits (120), Expect = 2.220e-5 Identity = 26/84 (30.95%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
C S + ++++ + M F+++ +Q V T+++ V++ LG+AK+ FN A+ WLP+S M++TS KAL + +P
Sbjct: 28 CLSSILMTVTNKFVVNGANFNMNFVMLFVQSAVCTLLLIVLKTLGYAKFRAFNKTDAKNWLPISFLLVLMIYTSSKALQFLAIP 111
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: A0A640KSM1_LEITA (Lipophosphoglycan biosynthetic protein (Lpg2) n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KSM1_LEITA) HSP 1 Score: 50.4 bits (119), Expect = 3.040e-5 Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNV 249
CS+S I + ++ + F++ ++V+Q A VIV + + F +Y F+ + A++WLP++L F AMLFTS K+L M+V
Sbjct: 20 CSVSMI--LVNKLIMNTFDMNFPLGILVLQSGGAVVIVTLAKAARFIEYPAFSLEVAKQWLPLTLLFVAMLFTSMKSLGTMSV 100
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Match: J7RG40_KAZNA (GDP-mannose transporter n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7RG40_KAZNA) HSP 1 Score: 50.1 bits (118), Expect = 4.150e-5 Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 1 CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDPFNFKTARRWLPVSLCFSAMLFTSFKALAIMNVP 252
C S + ++++ + M F+++ +Q LV T+++ V+R LG+AK+ N A+ W P+S+ M++TS KAL + VP
Sbjct: 28 CGSSILMTVTNKFVVNLENFNMNFVMLFVQSLVCTLLLVVLRLLGYAKFRSLNKTDAKNWFPISVLLVLMIYTSSKALQFLAVP 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152461.3462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig152461.3462.1 >prot_H-elongata_contig152461.3462.1 ID=prot_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp CSISPIPFISSQALAYNFEVKMTFLLVVMQCLVATVIVEVVRRLGFAKYDback to top mRNA from alignment at H-elongata_contig152461:1226..1483- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig152461.3462.1 ID=mRNA_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig152461:1226..1483- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig152461:1226..1483- >mRNA_H-elongata_contig152461.3462.1 ID=mRNA_H-elongata_contig152461.3462.1|Name=mRNA_H-elongata_contig152461.3462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig152461:1226..1483- (Himanthalia elongata Himel1 dioecious)back to top |