mRNA_H-elongata_contig15225.3452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15225.3452.1
Unique NamemRNA_H-elongata_contig15225.3452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Match: D8LH21_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH21_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.700e-12
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 3 
Query:  225 MQNGSKYVPPHLRGGGGEPGSEVAIQHHVG---GPGGPIPVQGQPSAPAGAWGSRPGRGG 395
            MQNGSKYVPPHLRGGGGE G   A+    G   GPGGP+PVQG P  P GAW  RPG GG
Sbjct:    1 MQNGSKYVPPHLRGGGGEEGPGPAVVQPAGIPGGPGGPVPVQGAPQ-PTGAWAPRPGAGG 59
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BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Match: A0A6H5JCH1_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.120e-10
Identity = 39/60 (65.00%), Postives = 40/60 (66.67%), Query Frame = 3 
Query:  225 MQNGSKYVPPHLRGGGGEPGSEVAIQHHVG---GPGGPIPVQGQPSAPAGAWGSRPGRGG 395
            MQNGSKYVPPHLRGGGGE G   A     G   GPGG +PVQG P  P GAW  RPG GG
Sbjct:    1 MQNGSKYVPPHLRGGGGEEGPGPAAVQPAGIPGGPGGXVPVQGAPQ-PTGAWAPRPGTGG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH21_ECTSI2.700e-1266.67RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JCH1_9PHAE1.120e-1065.00RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15225contigH-elongata_contig15225:2683..5361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue4.9e-11
Seed eggNOG ortholog2880.D8LH21
Preferred nameDDX3X
KEGG koko:K10268,ko:K11594,ko:K17642
KEGG Pathwayko04622,ko05161,ko05203,map04622,map05161,map05203
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000819,GO:0001558,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002164,GO:0002165,GO:0002168,GO:0002181,GO:0002183,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003743,GO:0003824,GO:0003924,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005829,GO:0005886,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007431,GO:0007435,GO:0007552,GO:0008026,GO:0008047,GO:0008094,GO:0008104,GO:0008134,GO:0008135,GO:0008143,GO:0008150,GO:0008152,GO:0008186,GO:0008190,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010466,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010623,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010951,GO:0010952,GO:0012501,GO:0012502,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016055,GO:0016070,GO:0016071,GO:0016192,GO:0016246,GO:0016441,GO:0016442,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019827,GO:0019867,GO:0019887,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030141,GO:0030154,GO:0030162,GO:0030177,GO:0030234,GO:0030295,GO:0030307,GO:0030308,GO:0030718,GO:0031047,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031332,GO:0031333,GO:0031369,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032392,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032642,GO:0032648,GO:0032722,GO:0032728,GO:0032940,GO:0032984,GO:0032988,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033592,GO:0033674,GO:0033993,GO:0034063,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034774,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035194,GO:0035272,GO:0035556,GO:0035613,GO:0035770,GO:0036098,GO:0036230,GO:0036314,GO:0036464,GO:0036477,GO:0040008,GO:0040029,GO:0042119,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042325,GO:0042327,GO:0042579,GO:0042623,GO:0042981,GO:0043021,GO:0043024,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043086,GO:0043154,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043273,GO:0043280,GO:0043281,GO:0043299,GO:0043312,GO:0043539,GO:0043549,GO:0043603,GO:0043604,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045069,GO:0045070,GO:0045087,GO:0045321,GO:0045495,GO:0045727,GO:0045787,GO:0045859,GO:0045860,GO:0045861,GO:0045862,GO:0045893,GO:0045926,GO:0045927,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0045948,GO:0046483,GO:0046677,GO:0046685,GO:0046903,GO:0048027,GO:0048102,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048707,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051346,GO:0051347,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060033,GO:0060205,GO:0060255,GO:0060293,GO:0060548,GO:0060828,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070717,GO:0070727,GO:0070887,GO:0070925,GO:0071103,GO:0071214,GO:0071236,GO:0071243,GO:0071310,GO:0071396,GO:0071470,GO:0071649,GO:0071651,GO:0071704,GO:0071826,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090068,GO:0090263,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0097193,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0097458,GO:0097617,GO:0097708,GO:0098588,GO:0098727,GO:0098772,GO:0098805,GO:0098813,GO:0099503,GO:0101002,GO:0104004,GO:0140014,GO:0140097,GO:0140098,GO:0198738,GO:1900087,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902532,GO:1902680,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1903508,GO:1903608,GO:1903900,GO:1903902,GO:1904813,GO:1905114,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0335@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15225.3452.1prot_H-elongata_contig15225.3452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15225 2683..5137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.2447124-CDS-H-elongata_contig15225:2682..28581622929900.2447124-CDS-H-elongata_contig15225:2682..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15225 2683..2858 -
1691679200.6210952-CDS-H-elongata_contig15225:2682..28581691679200.6210952-CDS-H-elongata_contig15225:2682..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15225 2683..2858 -
1622929900.261431-CDS-H-elongata_contig15225:5127..51371622929900.261431-CDS-H-elongata_contig15225:5127..5137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15225 5128..5137 -
1691679200.6339068-CDS-H-elongata_contig15225:5127..51371691679200.6339068-CDS-H-elongata_contig15225:5127..5137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15225 5128..5137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.275545-UTR-H-elongata_contig15225:5137..53611622929900.275545-UTR-H-elongata_contig15225:5137..5361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15225 5138..5361 -
1691679200.642853-UTR-H-elongata_contig15225:5137..53611691679200.642853-UTR-H-elongata_contig15225:5137..5361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15225 5138..5361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15225.3452.1

>prot_H-elongata_contig15225.3452.1 ID=prot_H-elongata_contig15225.3452.1|Name=mRNA_H-elongata_contig15225.3452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MQNGSKYVPPHLRGGGGEPGSEVAIQHHVGGPGGPIPVQGQPSAPAGAWG
SRPGRGGGGGYV
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mRNA from alignment at H-elongata_contig15225:2683..5361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15225.3452.1 ID=mRNA_H-elongata_contig15225.3452.1|Name=mRNA_H-elongata_contig15225.3452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2679bp|location=Sequence derived from alignment at H-elongata_contig15225:2683..5361- (Himanthalia elongata Himel1 dioecious)
AGCGAGTGGATTTTCGAAGTAACTTCAGCCACCCCCGAAACCAACCCAAA
CCTATTATATATGGTCATCTTCCATAGACCCAAACAAAACTGAACAAAAT
AAAACGGGTGTTCAGTTGAAATAGGAGGCGTCTAGTTCGACCAGCCAACC
TTCTGTAGAGAGTACACCACCGGATCGAAGGTTTGTTCATTCGTTGGAAG
GAGAACGTGCAACAACTTGTCCAGATGCAAAATGGTGAGCTCGTAATTGA
AGACAGAGCATTGATGTATGGACCTTTGTTTCCGTGGCGTTGTTCATCTG
TCAAAATATCGTTTTTCCCGCTGCGCTGAATTTGCACTGCACCGATTGCC
CGACCCACCTCAGCGCTCGATAACAATGGTCGTCAGTCGGGTTCTTCGTC
ACGTCAAATACTCTGACTCCCGGCCTTACATTCGAGAAACTCTTTTCCAG
TAGCTCTTCTCAGCGTTCAATCTCCTCGAAGGGTTTCAGGTTTCCCGGTA
GTGGCAGCTGCGATGAAGTGTGCTGACTGGAATTTGTTTTTTCGTTTTCT
GGGTCGAACTTTTCGGACGTTTGGATGTGGGACTTTGAAAATGTCCACTA
GGAGTAGGCGATTTGACGGATTCGTTTTGTGTTACATCATCTGCTTCAGT
TACGACTGGCCGCTGGGAGAGATCAGCTACGAGGCAATCTCTGCCACCGA
TATGATTTTTTACGCCTCGCGTGGTGCCCCAGCCCAGCCAGTTAGGCATT
GCCTTTGCTAGGCTTGTTTAAATTTTGTCTCTGGATGATTCTCAGCCGTA
AACAGCTTCTAGATTATCAGTATAATAAAGAGTTATCGCCGTTTTTTGTT
AATTTTTGGTAACTCCCTCTGTCTAATTCATAAATCTTAGATATATAGAA
AGACATGGCTACCAGCAGCCTGAGCCCCGCCCAAATCTGATATACTGCCT
TCTCCTTGGCCTTTCTAGAGTCGGCATTCTACGTTCCGATCGCCTTTGAC
TCCGGCAGCGGCCTCAGCTTCCTCCCCATCCCCACGGCAGCGGTGATTCC
TAACATTAAAAAAAATTCGGAGAGAAGGGAAAAATAACTCCCACGCCCTC
CCTCGGCGCTTCCACCTAAGATGTACTCGTAATAACAGGCCGGTATCATT
ATTAATAGTTTATTTTTATCCCCCGCCTTGTCTTGTTCTCAAAACAGACG
TATGCAATTTGAATCATACACGGGCACACGAACGCTGCAGTCTCTTAGCC
GGTCGTAATTTTTTTTTTATGCTGCATTTTAGAGAAGGTCGCTTTTCGTC
CCGCTTTTCTCAAAACACTTCTTGAGATTGATTTGCAGTTGTCATTTCAG
TGGTCCACTATCTTTTCTTTCCTTCAGTCCCGGCTGCTGTAACGGTTCCG
TTGACTACCAACTACCGACAGCACGCACCCAACGTAATCGAGTGAGAAAC
AAAGCCCCAATACCCCAATATTTGTGTCTTGAAAAATAATTAGACATGAA
ACATCAGGACCAAAAACATTCTCCGTATTTTCAGACGTTGCCCATATTTT
TAAATGGCTGGTGTCGTGTATTGATAGTTGACATGACCTCTTTTCTTTTT
CTTTGCTCCGTTGCTGACCACGAGCGGGATAGACGATGACCACACAACGA
TAAATGTGCAAATTTTTGTTTCAACCTGCTGATATGCTCGGGTGATGGAC
GCGTGGGCTTAGCTCCAACTCTGATATTTTGTTCGAACTAAATTTCGAGT
GGCAAACAAACGATTCTAACCTGTTGCCTGCCGGGTAACCACGAAATACG
AGGAAAATGTAGATGACTAAATTCATTAAAAAAGCATATAAAAAATAACT
TACCAGGCTCCCACAGAAAAACCATATGGTTCTCGTGTTACTATTTAAAA
GCATATGAACTCATTAGAACCCTCCGAACATCCAGACCTTCTTAGAACAG
GGGACCAACTATCGTCAGGTTCGCTGCTCCATGTCATTCCTCCGATCAAT
TCAAGTATTTACAAAAATGTGCTAATGGGGTGTCTTTCTTTTTTTGTTTC
GTTTGAGTTTGATGTGCCTTCTAGCGACAACAGTTAGGCGAAGCCACTGG
CTTTTCTGCCGTGCGAATGAAGCTCCCCAAACTCGAGTAGGGCACGTACG
AGCCTGCCGGCTATGTGGCTCACCCTCTCCGAACATGCATGATTTCGTTT
TCGTATTTTTTTTCATTTTTTTTTTCGGGAGCGATATCGAGAATAAACCA
TTTTGTTCCTCTGAGGCAGGAGATAAGCCCACTCAAAAATCTGTGATTAA
GTACCGCGCATGTTCAGTCTGCTGCTTCAGCCTGTCCGGATCGCGATAAT
CTGTTTTTTTTTTTTTCTTGTGAAAAACGCTTTCACTTATGTATTATGTC
GACCCCCGCTCTAGCCGCACATCAAATCGATGGTACCCGATCTATTGCCC
TCTATCCCTCGCTTCCCCTTCGCCGCGATCGACCCACCTCCACATAAACC
AAGGCTCTAAATACGTCCCGCCGCACCTAAGGGGTGGTGGGGGCGAACCG
GGTTCCGAGGTCGCCATTCAACATCACGTGGGAGGGCCAGGAGGACCCAT
CCCCGTGCAAGGTCAGCCGTCGGCCCCCGCTGGCGCCTGGGGGTCTAGGC
CAGGTCGCGGCGGGGGCGGCGGATACGTA
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Coding sequence (CDS) from alignment at H-elongata_contig15225:2683..5361-

>mRNA_H-elongata_contig15225.3452.1 ID=mRNA_H-elongata_contig15225.3452.1|Name=mRNA_H-elongata_contig15225.3452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig15225:2683..5361- (Himanthalia elongata Himel1 dioecious)
ATGCAAAATGATGCAAAATGGCTCTAAATACGTCCCGCCGCACCTAAGGG
GTGGTGGGGGCGAACCGGGTTCCGAGGTCGCCATTCAACATCACGTGGGA
GGGCCAGGAGGACCCATCCCCGTGCAAGGTCAGCCGTCGGCCCCCGCTGG
CGCCTGGGGGTCTAGGCCAGGTCGCGGCGGGGGCGGCGGATACGTAGCTC
TAAATACGTCCCGCCGCACCTAAGGGGTGGTGGGGGCGAACCGGGTTCCG
AGGTCGCCATTCAACATCACGTGGGAGGGCCAGGAGGACCCATCCCCGTG
CAAGGTCAGCCGTCGGCCCCCGCTGGCGCCTGGGGGTCTAGGCCAGGTCG
CGGCGGGGGCGGCGGATACGTA
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