prot_H-elongata_contig15225.3452.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15225.3452.1
Unique Nameprot_H-elongata_contig15225.3452.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
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BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Match: D8LH21_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH21_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.280e-13
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:    1 MQNGSKYVPPHLRGGGGEPGSEVAIQHHVG---GPGGPIPVQGQPSAPAGAWGSRPGRGG 57
            MQNGSKYVPPHLRGGGGE G   A+    G   GPGGP+PVQG P  P GAW  RPG GG
Sbjct:    1 MQNGSKYVPPHLRGGGGEEGPGPAVVQPAGIPGGPGGPVPVQGAPQ-PTGAWAPRPGAGG 59
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BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Match: A0A6H5JCH1_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.670e-12
Identity = 39/60 (65.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    1 MQNGSKYVPPHLRGGGGEPGSEVAIQHHVG---GPGGPIPVQGQPSAPAGAWGSRPGRGG 57
            MQNGSKYVPPHLRGGGGE G   A     G   GPGG +PVQG P  P GAW  RPG GG
Sbjct:    1 MQNGSKYVPPHLRGGGGEEGPGPAAVQPAGIPGGPGGXVPVQGAPQ-PTGAWAPRPGTGG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15225.3452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH21_ECTSI2.280e-1366.67RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JCH1_9PHAE9.670e-1265.00RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15225contigH-elongata_contig15225:2683..5137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15225.3452.1mRNA_H-elongata_contig15225.3452.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15225 2683..5361 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15225.3452.1 ID=prot_H-elongata_contig15225.3452.1|Name=mRNA_H-elongata_contig15225.3452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MQNGSKYVPPHLRGGGGEPGSEVAIQHHVGGPGGPIPVQGQPSAPAGAWG
SRPGRGGGGGYV
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