mRNA_H-elongata_contig151938.3436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151938.3436.1
Unique NamemRNA_H-elongata_contig151938.3436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A6H5JHZ0_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ0_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.060e-81
Identity = 118/130 (90.77%), Postives = 125/130 (96.15%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAVVKV 393
            +++ NQSFADTIQDVYRDGDLIWVHDYHLTM+PQMLRNVLPSAKIGFFLHLPFPSSEIYRILP RE ILEGILSSD+VGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANV ICPVGIDPDAV ++
Sbjct:  159 YKAANQSFADTIQDVYRDGDLIWVHDYHLTMLPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPYREQILEGILSSDIVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVTICPVGIDPDAVTQL 288          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.200e-60
Identity = 99/147 (67.35%), Postives = 119/147 (80.95%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQML----------------RNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAVVKVS 396
            +++VNQ FAD IQ++YRDGD++WVHDYHL ++PQML                R +LPSAKI FFLH+PFPSSEIYRILP RE ILEG+L SDL+GFQTYDYARHFLSTVESLLDA+CS QGVE+NGHFA+ AICPVGIDP+  V+++
Sbjct:  504 YKAVNQQFADAIQEIYRDGDMVWVHDYHLMLLPQMLTIXXXXXXXXXXXXXXRALLPSAKISFFLHVPFPSSEIYRILPNREQILEGLLGSDLLGFQTYDYARHFLSTVESLLDADCSRQGVEYNGHFASAAICPVGIDPEQWVQLA 650          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A7S2SJ77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ77_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.750e-57
Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGID 372
            + SVNQ+FADTIQDVY  GDLIWV DYH  ++PQMLRN+LPSA+IGFFLH+PFPSSE+YRI+P RE IL G+L +DL+GFQT+DYARHFL++ ES+L    SPQ VE   H   + ICPVGID
Sbjct:   98 YVSVNQAFADTIQDVYEPGDLIWVQDYHFLLLPQMLRNLLPSARIGFFLHVPFPSSELYRIMPYREEILTGLLHADLIGFQTFDYARHFLASCESILFCETSPQSVEFRDHSTGICICPVGID 220          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A7R9U234_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U234_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.450e-55
Identity = 83/124 (66.94%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDP 375
            +  VNQ FADTI+D+Y DGDL+W+HDYHL +VPQMLR +LP AKIGFFLH+ FPSSE+YRILP RE IL GIL+SDL+GFQTY YAR+F  T ES+L  + SP  VE  GH+ANV I P+GI+P
Sbjct:  188 YVQVNQHFADTIRDIYEDGDLVWIHDYHLMLVPQMLRALLPHAKIGFFLHVAFPSSELYRILPYREEILRGILASDLIGFQTYQYARYFFQTCESILGLDWSPVAVEDAGHYANVCIIPIGINP 311          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A7S1UL28_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL28_9STRA)

HSP 1 Score: 185 bits (469), Expect = 5.510e-52
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 1
Query:   13 VNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDP 375
            VNQ FAD I+DVY DGDLIWVHDYHL +VPQMLR +LP AKIGFFLH+ FPSSE+YRILP RE IL GILSSDLVGFQTY YAR+F  T ES+L  + SP  VE  GH+ANV I P+GI P
Sbjct:  202 VNQLFADAIRDVYEDGDLIWVHDYHLMLVPQMLRALLPHAKIGFFLHIAFPSSELYRILPYREEILRGILSSDLVGFQTYQYARYFFQTCESILGLDWSPVAVEDAGHYANVCIIPIGIQP 322          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: F0Y4H1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4H1_AURAN)

HSP 1 Score: 179 bits (454), Expect = 1.610e-50
Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAVVKVS 396
            + SVNQ+FAD ++DV  DGDLIW+ DYH  ++P MLR + P AK+GFFLH+PFPSSE+YR LP RE +L G+L++DL+GFQTYDYARHFLS+ E +L    SP  +EH+GH   V +CPVGI+P +VV  S
Sbjct:   90 YVSVNQAFADAVRDVAADGDLIWIQDYHFMLLPSMLRALSPHAKLGFFLHVPFPSSELYRTLPFREEVLHGLLAADLLGFQTYDYARHFLSSCEMVLGIETSPDRIEHDGHQTRVCVCPVGIEPSSVVARS 220          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A7S3YM13_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM13_HETAK)

HSP 1 Score: 172 bits (436), Expect = 3.580e-49
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAK--IGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAV 384
            + SVNQ+FAD IQ++YR+GD+IWV DYH  ++P++LRN L  A   IG + HLPFPSSE+YRILP RE +L G L+++LVGFQTYDY RHFLST E LL  +C   G+E+ G F  VAICP+GIDP ++
Sbjct:  217 YASVNQTFADAIQEIYREGDIIWVQDYHFMLLPRLLRNQLDGANPLIGMYFHLPFPSSELYRILPFREELLLGALAANLVGFQTYDYVRHFLSTAEFLLGVDCRHNGLEYEGSFTTVAICPIGIDPGSL 345          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A8J2X0D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.150e-48
Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAV 384
            +   NQ+FAD I+DV +DGDLIW+ DYH  ++P+MLR + P +K+GFFLH+PFPSSE+YR LP RE IL G+L++DL+GFQTYDYARHFLS+ E +L    +P  VEH GH   V +CPVGI+P+ V
Sbjct:  171 YVGANQAFADVIRDVAQDGDLIWIQDYHFMLLPRMLRQLSPDSKLGFFLHVPFPSSELYRTLPFREEILRGLLAADLLGFQTYDYARHFLSSCEMVLGLETAPDHVEHEGHLTRVCVCPVGIEPEVV 297          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A7S3NKN0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKN0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.390e-47
Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVL-----PSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAV 384
            + + N+++AD + DV R+GDLIW+ DYH  +VPQMLR+ L       AK+GFFLH+PFPSSE+YR+LP RE IL GIL++DLVGFQTYDYARHFLS+ E +L    SP  +EH+GH   + +CPVGI+PD V
Sbjct:  288 YVAANRAYADAVADVAREGDLIWIQDYHFMLVPQMLRSTLGETKAAEAKLGFFLHVPFPSSELYRMLPYREEILRGILAADLVGFQTYDYARHFLSSCEIVLGIETSPDRIEHDGHQTRICVCPVGIEPDVV 419          
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Match: A0A6M7YNS9_FUSOX (Alpha,alpha-trehalose-phosphate synthase n=1 Tax=Fusarium oxysporum Fo47 TaxID=660027 RepID=A0A6M7YNS9_FUSOX)

HSP 1 Score: 164 bits (415), Expect = 2.370e-47
Identity = 76/133 (57.14%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    4 FQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVL----PSAKIGFFLHLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDANCSPQGVEHNGHFANVAICPVGIDPDAVVK 390
            +Q VN+ FA T+    +DGDLIWVHDYHL ++PQMLR  +     + KIGFFLH PFPSSEIYRILP RE +L G+L  DL+GF TYDYARHFLS+   +L+   +P GV+ NG F  V   P+GIDPD  V+
Sbjct:  128 YQEVNRLFAKTVIKDVQDGDLIWVHDYHLMLLPQMLREEIGESKKNVKIGFFLHTPFPSSEIYRILPVREALLTGLLDCDLIGFHTYDYARHFLSSCSRILECPTTPNGVDWNGRFVTVGAFPIGIDPDNFVE 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151938.3436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHZ0_9PHAE1.060e-8190.77GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CRD5_9STRA1.200e-6067.35Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S2SJ77_9STRA3.750e-5767.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9U234_9STRA1.450e-5566.94Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1UL28_9STRA5.510e-5271.90Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
F0Y4H1_AURAN1.610e-5059.54Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3YM13_HETAK3.580e-4959.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2X0D0_9STRA1.150e-4859.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NKN0_9STRA1.390e-4758.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6M7YNS9_FUSOX2.370e-4757.14Alpha,alpha-trehalose-phosphate synthase n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151938contigH-elongata_contig151938:226..1386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue6.1e-43
Seed eggNOG ortholog44056.XP_009034954.1
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons3
Model size402
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151938.3436.1prot_H-elongata_contig151938.3436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151938 226..1386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.9106889-CDS-H-elongata_contig151938:225..3121622929898.9106889-CDS-H-elongata_contig151938:225..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 226..312 -
1691679200.1863902-CDS-H-elongata_contig151938:225..3121691679200.1863902-CDS-H-elongata_contig151938:225..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 226..312 -
1622929898.9225824-CDS-H-elongata_contig151938:733..8741622929898.9225824-CDS-H-elongata_contig151938:733..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 734..874 -
1691679200.1982281-CDS-H-elongata_contig151938:733..8741691679200.1982281-CDS-H-elongata_contig151938:733..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 734..874 -
1622929898.93346-CDS-H-elongata_contig151938:1212..13861622929898.93346-CDS-H-elongata_contig151938:1212..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 1213..1386 -
1691679200.209499-CDS-H-elongata_contig151938:1212..13861691679200.209499-CDS-H-elongata_contig151938:1212..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151938 1213..1386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151938.3436.1

>prot_H-elongata_contig151938.3436.1 ID=prot_H-elongata_contig151938.3436.1|Name=mRNA_H-elongata_contig151938.3436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
FFQSVNQSFADTIQDVYRDGDLIWVHDYHLTMVPQMLRNVLPSAKIGFFL
HLPFPSSEIYRILPCREVILEGILSSDLVGFQTYDYARHFLSTVESLLDA
NCSPQGVEHNGHFANVAICPVGIDPDAVVKVSG*
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mRNA from alignment at H-elongata_contig151938:226..1386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151938.3436.1 ID=mRNA_H-elongata_contig151938.3436.1|Name=mRNA_H-elongata_contig151938.3436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1161bp|location=Sequence derived from alignment at H-elongata_contig151938:226..1386- (Himanthalia elongata Himel1 dioecious)
TTTTTCCAGTCCGTGAACCAGAGCTTCGCCGACACGATCCAAGACGTGTA CAGGGACGGGGACCTCATCTGGGTGCACGACTATCACCTGACGATGGTCC CGCAGATGCTCCGAAACGTGCTGCCCTCGGCCAAGATAGGCTTCTTCTTG CACCTTCCCTTCCCTTCCTCGGAGGTGACCGGCCTTATTATAGCGATGGT AGTGATAGAGACTATGACGATACTGAGGATAACTCTGGTAATATTAATGG TAATACGAAGGAGAATGGTCGTCGTGATCATGATCGTGGTCGTGTCTAGG TTTATCAGAGAACACTGGTTGTTTATCTGAATTGTCTGAATGTCTTTCCT TATATTTGTACGTATCGTATTTTTTGTTGGCATGTTTATCTATCTTTGTC TTGCGTTGTTTTAACCCCCTCGACCCCGCCCCCCCATACACACACCCGCT TTAGTTTATTTTTTCTTTCCCCCCCCCCGCACACACACACACGCTTTATT TTATTTTATCAGATCTACCGTATTTTACCGTGCCGCGAGGTCATCTTGGA AGGGATCCTCAGCTCTGATCTGGTCGGGTTCCAAACGTACGACTACGCCC GACACTTCTTGTCCACCGTCGAAAGTCTGCTCGACGCAAACTGCTCCCCG CAGGTAACTAGAGGTAACTAGATGTGGCGCTAGAGATGGTCTCCTCGTTG TTCCGAGGTTTACAGAGGTGGCGCGCGATTCATCAGGGGCGGGGCAAAAA GCCAGCGGCTGGTCTTCTTCTCGACGTTGCTTTGCATGCCAGGTCCCCCC CCCCCCTTAATTTTGCGGCAGTACGAAGTATGGTATGGTATCGTACGATT TCATGGTACCACTTTCTTGTGTAGACACCCTTTTCTGAGTTGTTCTGCGG TACTGAATTCGAGGTGCTGGTTCTATTTATATACTGTATTTAATATATAT ATATAAGATTATGTACCCGCGACACATACTGCTTGGTGCGCCTTGTATCG TCTGATATTAAAATCGAACCCTGGATGGCGTGTTCTTGATTCCGTTTGGC TGGGGGGCGGGATGCGGCATTCAGGGAGTCGAGCACAACGGTCACTTTGC AAACGTTGCCATTTGTCCGGTGGGGATCGACCCCGACGCCGTTGTGAAGG TAAGTGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig151938:226..1386-

>mRNA_H-elongata_contig151938.3436.1 ID=mRNA_H-elongata_contig151938.3436.1|Name=mRNA_H-elongata_contig151938.3436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig151938:226..1386- (Himanthalia elongata Himel1 dioecious)
TTTTTCCAGTCCGTGAACCAGAGCTTCGCCGACACGATCCAAGACGTGTA
CAGGGACGGGGACCTCATCTGGGTGCACGACTATCACCTGACGATGGTCC
CGCAGATGCTCCGAAACGTGCTGCCCTCGGCCAAGATAGGCTTCTTCTTG
CACCTTCCCTTCCCTTCCTCGGAGTTTTTCCAGTCCGTGAACCAGAGCTT
CGCCGACACGATCCAAGACGTGTACAGGGACGGGGACCTCATCTGGGTGC
ACGACTATCACCTGACGATGGTCCCGCAGATGCTCCGAAACGTGCTGCCC
TCGGCCAAGATAGGCTTCTTCTTGCACCTTCCCTTCCCTTCCTCGGAGAT
CTACCGTATTTTACCGTGCCGCGAGGTCATCTTGGAAGGGATCCTCAGCT
CTGATCTGGTCGGGTTCCAAACGTACGACTACGCCCGACACTTCTTGTCC
ACCGTCGAAAGTCTGCTCGACGCAAACTGCTCCCCGCAGATCTACCGTAT
TTTACCGTGCCGCGAGGTCATCTTGGAAGGGATCCTCAGCTCTGATCTGG
TCGGGTTCCAAACGTACGACTACGCCCGACACTTCTTGTCCACCGTCGAA
AGTCTGCTCGACGCAAACTGCTCCCCGCAGGGAGTCGAGCACAACGGTCA
CTTTGCAAACGTTGCCATTTGTCCGGTGGGGATCGACCCCGACGCCGTTG
TGAAGGTAAGTGGATAGGGAGTCGAGCACAACGGTCACTTTGCAAACGTT
GCCATTTGTCCGGTGGGGATCGACCCCGACGCCGTTGTGAAGGTAAGTGG
ATAG
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