mRNA_H-elongata_contig15175.3423.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI) HSP 1 Score: 381 bits (978), Expect = 3.210e-122 Identity = 201/273 (73.63%), Postives = 231/273 (84.62%), Query Frame = 1
Query: 1 VLRPSDGMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACPYL 816
VL PSDGMCDQKGSF+DDEKLRFDFSWSG+L+ EQ A VED+VND I ++LPV+A+VAPL+QAQ I SLR VFGERYPDPVRVLS+G+DVP +L+DPENSAW DVSVEFCGGTHL+NT EAE+F +LEE GIAKGVRRIVAVTRG+A A + A++FEQQL AD I D+SLD VRRL AELD +V+S+K+KNK R RLA LVQKAK +KKKVMEERVGQAV +GK EAEK KE+GG ++VFR DFGCDAKSA KILAEVSKACP L
Sbjct: 649 VLDPSDGMCDQKGSFLDDEKLRFDFSWSGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIGQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTT-----VRRLGAELDGAVISVKTKNKLRARLATLVQKAKALKKKVMEERVGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPEL 916
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE) HSP 1 Score: 321 bits (822), Expect = 2.260e-101 Identity = 171/237 (72.15%), Postives = 197/237 (83.12%), Query Frame = 1
Query: 106 AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACPYL 816
A VED+VND I ++LPV+A+VAPL+QAQ I SLR VFGERYPDPVRVLS+G+DVP +L+DPENSAW DVSVEFCGGTHL+NT EAE+F +LEE GIAKGVRRIVAVTRG+A A + A++FEQQL AD I D+SLD VRRL AELD +V+S+K+KNK R RLA LVQKAK +KKKVMEERVGQAV GK EAEK KE+GG ++VFR DFGCDAKSA KILAEVSKACP L
Sbjct: 518 ADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIGQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTK-----VRRLGAELDGAVISVKAKNKLRARLATLVQKAKALKKKVMEERVGQAVTAGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPEL 749
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A6V2XN65_HETAK (Alanine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XN65_HETAK) HSP 1 Score: 234 bits (596), Expect = 4.940e-67 Identity = 131/265 (49.43%), Postives = 174/265 (65.66%), Query Frame = 1
Query: 19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACP 810
G CDQKGS VD E+LRFDF+W+G L PEQ A+VE +VN+ I + LPV+A V+P +QA I SLR VFGERYPDPVRV+SVG V +L DP + W +S+EFCGGTHLTNT +A F L+EE GIAKG+RR++AVTRG A +A D +R+FE +L AA L+ A + L+ L+ +S+ KN+ R L L K K KKK ++ G A+ + + +A++ +E+G KVV R DFGCD K K + E+ K P
Sbjct: 648 GACDQKGSAVDAERLRFDFAWNGPLEPEQLARVEAIVNEKIAEQLPVYAEVSPFEQACQIPSLRRVFGERYPDPVRVISVGAPVGELLADPLDPKWNGLSIEFCGGTHLTNTGQAAFFQLMEESGIAKGIRRVIAVTRGAAEEARDRSRAFEAELKAA-----AELEGEALLEACKGLTQALNPLAISVVDKNRLREELGALATKVKAWKKKQLKAMSGMALGLCEEKAKEAREAGARKVVLRVDFGCDGKVGKKCVQEMHKHHP 907
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S2V5N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N9_9STRA) HSP 1 Score: 225 bits (573), Expect = 5.870e-67 Identity = 130/267 (48.69%), Postives = 172/267 (64.42%), Query Frame = 1
Query: 13 SDGMCDQKGSFVDDEKLRFDFSWSGALSPEQAQ-VEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACP 810
S GMC+QKGS VD ++LRFDFSW+ E Q VE +VN+ I+ +LPV A VAPL++A I SLR VFGERYPDPVRV+SVG+DV +L+DPEN AW +S+EFCGGTHL+NT EA+ F LLEEGGIAKG+RR++ VTR A A + + +F++++T AD + +LD R L+ EL+ +S+ K +R +L V++ K KKK QA+ A + KE G + VV R DFGC+ K K L E K P
Sbjct: 165 SGGMCEQKGSHVDQDRLRFDFSWNAQPKTEDLQKVEALVNEKIEAALPVFAEVAPLEKAARIHSLRQVFGERYPDPVRVVSVGQDVGPMLEDPENPAWSGLSIEFCGGTHLSNTKEAKYFQLLEEGGIAKGIRRVIGVTREAAVAAKEASEAFKKKITEADKLEGQALDEA-----WRALTQELNQLQISIVDKAGHRAQLDAQVERIKKWKKKAAAGSATQAIGAVNALASEAKEKGQNVVVARLDFGCNGKVGKKALGEFKKVHP 426
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A835Z4U5_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U5_9STRA) HSP 1 Score: 233 bits (594), Expect = 9.940e-67 Identity = 130/263 (49.43%), Postives = 177/263 (67.30%), Query Frame = 1
Query: 19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKA 804
G+CDQKGSFVDD+KLRFDF+WSG L +Q A VE +VN+ I+ +PV+A+VAPLD+A I +LRSVFGERYPDPVRVLSVG++VP +L+DP++ +W ++SVEFCGGTHLTNT +AE+FA++EE GIAKG+RRI+AVTR A +A +A +FE+++ A + + D L + +RL LDT+ +S K + R +A KKK E V A ++G T E K +G D+V+ G D K+ T L A
Sbjct: 654 GLCDQKGSFVDDDKLRFDFAWSGPLPADQIAAVEKIVNETIQAKMPVYAHVAPLDKALKIRALRSVFGERYPDPVRVLSVGQEVPAMLEDPDSDSWSNLSVEFCGGTHLTNTGDAEAFAIMEETGIAKGIRRIIAVTRERAHEAKALAGTFEEEVKALAPL--ATQDPLKLEKETKRLLPVLDTAAISATDKQRIRDIIAGYTVAITAHKKKAANEGVAAAKELGTTAGEAAKAAGKDRVIVVLPDGADNKTITAALTAAKAA 914
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: W7TIB5_9STRA (Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIB5_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.220e-59 Identity = 115/210 (54.76%), Postives = 146/210 (69.52%), Query Frame = 1
Query: 19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIK 645
G+CDQKGS VDDEKLRFDF+W+ AL+ E+ A+VE +V + I Q LPVH+Y+APL++A I SLR VFGERYPDPVRVLSVG +VP +L+DP N AW D SVEFCGGTHL+NT EAE FAL+EE GIAKG+RRI AVT+ MAR A ++A F L A+ + L+ V+ L+ L +S K ++R L L+ + K K
Sbjct: 655 GLCDQKGSAVDDEKLRFDFAWNKALTKEELAEVETIVRERISQELPVHSYIAPLEKALHINSLRQVFGERYPDPVRVLSVGHEVPPMLEDPTNPAWQDTSVEFCGGTHLSNTREAERFALIEETGIAKGIRRITAVTKDMARAAEELAEEFAGLLALAEVKPEEELEGE-----VKMLNTRLGPLTISAVEKERFRTALDALLTRVKKFK 859
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: B7G5M3_PHATC (Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5M3_PHATC) HSP 1 Score: 211 bits (536), Expect = 9.290e-59 Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 1
Query: 28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSK 801
DQKGS VD+ KLRFDFSWSG L+PEQ A+VE + D I ++PV AYVAPL AQ I SLR+VFGE+YPDPVRV++V VP +L +P++S W + SVEFCGGTHLTNT EAE+F LL E GIAKG+RRI A+T G A+ A +A FE +LTAA+ + L++ V++LSAELD ++ K ++R +LA + ++ KK+ + +GG KVV R DFG + K A ++ K
Sbjct: 645 DQKGSLVDETKLRFDFSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVSDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGEAKKAIALANEFESKLTAAEVVQGDDLEST-----VKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAYKKQKL--------------------AGGSKVVMRFDFGVEGKVAKSVMTAFGK 879
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S4ME88_9STRA (Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ME88_9STRA) HSP 1 Score: 208 bits (529), Expect = 9.210e-58 Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 1
Query: 28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSK 801
DQKGS VD+ KLRFDFSW+G L P Q A VED++N I +P+ ++VAPL+ A+ I SLR+VFGE YPDPVRV+SV + +P ILQ+P++ W SVEFCGGTHL+NT EAE F LL+E GIAKGVRRI AVT G A+ A + A FE +L A A+ L+A V++LS EL +S+ K+ ++ L L +KA KK+ R + V+ + A E+GG+K+ R DFG D K A + +K
Sbjct: 639 DQKGSLVDELKLRFDFSWNGPLKPAQLAAVEDMINSRISAGVPIQSFVAPLEDAKQISSLRAVFGEVYPDPVRVVSVSPEPIPEILQNPQDGQWLQYSVEFCGGTHLSNTKEAEMFVLLKEEGIAKGVRRITAVTGGDAKAAGERADEFEGRLKEAGALPGAELEAG-----VKKLSEELKDLSISVARKDGFKTELGKLTKKAMAWKKEQAAARTKEVVEQLVSAAN---EAGGNKIALRIDFGIDGKVAKSVAQSFAK 890
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S4GJP2_9EUGL (Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJP2_9EUGL) HSP 1 Score: 202 bits (515), Expect = 1.020e-55 Identity = 118/263 (44.87%), Postives = 165/263 (62.74%), Query Frame = 1
Query: 19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQAQ-VEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKA 804
G+ DQKGS D++KLRFDFSW+G + PEQ Q VE VN I + PV A L+QA+ I SLRSVFGE+YPDPVRV+SVG +V ++ +P+N W S+EFCGGTH+ N++EAE F ++EE GIAKGVRRIVAVTR AR+A A + +++ A A+ D LDA V+ EL + + + K + L+++ K +K++ +E+ + + E+ KE+G VV R DFG D K +K+L E +KA
Sbjct: 706 GLVDQKGSLCDEQKLRFDFSWNGPVGPEQLQRVEAQVNACIDAAQPVDALPVALEQAKFIYSLRSVFGEQYPDPVRVVSVGNNVSAMVDEPQNKDWAAGSIEFCGGTHIANSAEAERFVIMEESGIAKGVRRIVAVTRSKAREAIANAAALREKVKAVAALPDAELDAA-----VKVFQKELLATPVGVVDKGALGKEVETLIKRVKKYQKQLEKEKEAEVLGKILPAVEEAKENGKGVVVLRLDFGTDGKLGSKLLKEATKA 963
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A8J9T9Q1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9Q1_PHATR) HSP 1 Score: 199 bits (505), Expect = 1.120e-55 Identity = 112/209 (53.59%), Postives = 147/209 (70.33%), Query Frame = 1
Query: 28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKK 648
DQKGS VD+ KLRFDFSWSG L+PEQ A+VE + D I ++PV AYVAPL AQ I SLR+VFGE+YPDPVRV++V VP +L +P++S W + SVEFCGGTHLTNT EAE+F LL E GIAKG+RRI A+T G A+ A +A FE +LTAA+ + L++ V++LSAELD ++ K ++R +LA + ++ KK
Sbjct: 449 DQKGSLVDETKLRFDFSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVSDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGEAKKAIALANEFESKLTAAEVVQGDDLEST-----VKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAHKK 652 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15175.3423.1 >prot_H-elongata_contig15175.3423.1 ID=prot_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp MCDQKGSFVDDEKLRFDFSWSGALSPEQAQVEDVVNDHIKQSLPVHAYVAback to top mRNA from alignment at H-elongata_contig15175:344..4595- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15175.3423.1 ID=mRNA_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4252bp|location=Sequence derived from alignment at H-elongata_contig15175:344..4595- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15175:344..4595- >mRNA_H-elongata_contig15175.3423.1 ID=mRNA_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig15175:344..4595- (Himanthalia elongata Himel1 dioecious)back to top |