mRNA_H-elongata_contig15175.3423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15175.3423.1
Unique NamemRNA_H-elongata_contig15175.3423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 3.210e-122
Identity = 201/273 (73.63%), Postives = 231/273 (84.62%), Query Frame = 1
Query:    1 VLRPSDGMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACPYL 816
            VL PSDGMCDQKGSF+DDEKLRFDFSWSG+L+ EQ A VED+VND I ++LPV+A+VAPL+QAQ I SLR VFGERYPDPVRVLS+G+DVP +L+DPENSAW DVSVEFCGGTHL+NT EAE+F +LEE GIAKGVRRIVAVTRG+A  A + A++FEQQL  AD I D+SLD       VRRL AELD +V+S+K+KNK R RLA LVQKAK +KKKVMEERVGQAV +GK EAEK KE+GG ++VFR DFGCDAKSA KILAEVSKACP L
Sbjct:  649 VLDPSDGMCDQKGSFLDDEKLRFDFSWSGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIGQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTT-----VRRLGAELDGAVISVKTKNKLRARLATLVQKAKALKKKVMEERVGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPEL 916          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 2.260e-101
Identity = 171/237 (72.15%), Postives = 197/237 (83.12%), Query Frame = 1
Query:  106 AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACPYL 816
            A VED+VND I ++LPV+A+VAPL+QAQ I SLR VFGERYPDPVRVLS+G+DVP +L+DPENSAW DVSVEFCGGTHL+NT EAE+F +LEE GIAKGVRRIVAVTRG+A  A + A++FEQQL  AD I D+SLD       VRRL AELD +V+S+K+KNK R RLA LVQKAK +KKKVMEERVGQAV  GK EAEK KE+GG ++VFR DFGCDAKSA KILAEVSKACP L
Sbjct:  518 ADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIGQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTK-----VRRLGAELDGAVISVKAKNKLRARLATLVQKAKALKKKVMEERVGQAVTAGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPEL 749          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A6V2XN65_HETAK (Alanine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XN65_HETAK)

HSP 1 Score: 234 bits (596), Expect = 4.940e-67
Identity = 131/265 (49.43%), Postives = 174/265 (65.66%), Query Frame = 1
Query:   19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACP 810
            G CDQKGS VD E+LRFDF+W+G L PEQ A+VE +VN+ I + LPV+A V+P +QA  I SLR VFGERYPDPVRV+SVG  V  +L DP +  W  +S+EFCGGTHLTNT +A  F L+EE GIAKG+RR++AVTRG A +A D +R+FE +L AA       L+  A     + L+  L+   +S+  KN+ R  L  L  K K  KKK ++   G A+ + + +A++ +E+G  KVV R DFGCD K   K + E+ K  P
Sbjct:  648 GACDQKGSAVDAERLRFDFAWNGPLEPEQLARVEAIVNEKIAEQLPVYAEVSPFEQACQIPSLRRVFGERYPDPVRVISVGAPVGELLADPLDPKWNGLSIEFCGGTHLTNTGQAAFFQLMEESGIAKGIRRVIAVTRGAAEEARDRSRAFEAELKAA-----AELEGEALLEACKGLTQALNPLAISVVDKNRLREELGALATKVKAWKKKQLKAMSGMALGLCEEKAKEAREAGARKVVLRVDFGCDGKVGKKCVQEMHKHHP 907          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S2V5N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N9_9STRA)

HSP 1 Score: 225 bits (573), Expect = 5.870e-67
Identity = 130/267 (48.69%), Postives = 172/267 (64.42%), Query Frame = 1
Query:   13 SDGMCDQKGSFVDDEKLRFDFSWSGALSPEQAQ-VEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKACP 810
            S GMC+QKGS VD ++LRFDFSW+     E  Q VE +VN+ I+ +LPV A VAPL++A  I SLR VFGERYPDPVRV+SVG+DV  +L+DPEN AW  +S+EFCGGTHL+NT EA+ F LLEEGGIAKG+RR++ VTR  A  A + + +F++++T AD +   +LD        R L+ EL+   +S+  K  +R +L   V++ K  KKK       QA+      A + KE G + VV R DFGC+ K   K L E  K  P
Sbjct:  165 SGGMCEQKGSHVDQDRLRFDFSWNAQPKTEDLQKVEALVNEKIEAALPVFAEVAPLEKAARIHSLRQVFGERYPDPVRVVSVGQDVGPMLEDPENPAWSGLSIEFCGGTHLSNTKEAKYFQLLEEGGIAKGIRRVIGVTREAAVAAKEASEAFKKKITEADKLEGQALDEA-----WRALTQELNQLQISIVDKAGHRAQLDAQVERIKKWKKKAAAGSATQAIGAVNALASEAKEKGQNVVVARLDFGCNGKVGKKALGEFKKVHP 426          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A835Z4U5_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U5_9STRA)

HSP 1 Score: 233 bits (594), Expect = 9.940e-67
Identity = 130/263 (49.43%), Postives = 177/263 (67.30%), Query Frame = 1
Query:   19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKA 804
            G+CDQKGSFVDD+KLRFDF+WSG L  +Q A VE +VN+ I+  +PV+A+VAPLD+A  I +LRSVFGERYPDPVRVLSVG++VP +L+DP++ +W ++SVEFCGGTHLTNT +AE+FA++EE GIAKG+RRI+AVTR  A +A  +A +FE+++ A   +   + D L  +   +RL   LDT+ +S   K + R  +A         KKK   E V  A ++G T  E  K +G D+V+     G D K+ T  L     A
Sbjct:  654 GLCDQKGSFVDDDKLRFDFAWSGPLPADQIAAVEKIVNETIQAKMPVYAHVAPLDKALKIRALRSVFGERYPDPVRVLSVGQEVPAMLEDPDSDSWSNLSVEFCGGTHLTNTGDAEAFAIMEETGIAKGIRRIIAVTRERAHEAKALAGTFEEEVKALAPL--ATQDPLKLEKETKRLLPVLDTAAISATDKQRIRDIIAGYTVAITAHKKKAANEGVAAAKELGTTAGEAAKAAGKDRVIVVLPDGADNKTITAALTAAKAA 914          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: W7TIB5_9STRA (Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIB5_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.220e-59
Identity = 115/210 (54.76%), Postives = 146/210 (69.52%), Query Frame = 1
Query:   19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIK 645
            G+CDQKGS VDDEKLRFDF+W+ AL+ E+ A+VE +V + I Q LPVH+Y+APL++A  I SLR VFGERYPDPVRVLSVG +VP +L+DP N AW D SVEFCGGTHL+NT EAE FAL+EE GIAKG+RRI AVT+ MAR A ++A  F   L  A+   +  L+       V+ L+  L    +S   K ++R  L  L+ + K  K
Sbjct:  655 GLCDQKGSAVDDEKLRFDFAWNKALTKEELAEVETIVRERISQELPVHSYIAPLEKALHINSLRQVFGERYPDPVRVLSVGHEVPPMLEDPTNPAWQDTSVEFCGGTHLSNTREAERFALIEETGIAKGIRRITAVTKDMARAAEELAEEFAGLLALAEVKPEEELEGE-----VKMLNTRLGPLTISAVEKERFRTALDALLTRVKKFK 859          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: B7G5M3_PHATC (Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5M3_PHATC)

HSP 1 Score: 211 bits (536), Expect = 9.290e-59
Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 1
Query:   28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSK 801
            DQKGS VD+ KLRFDFSWSG L+PEQ A+VE +  D I  ++PV AYVAPL  AQ I SLR+VFGE+YPDPVRV++V    VP +L +P++S W + SVEFCGGTHLTNT EAE+F LL E GIAKG+RRI A+T G A+ A  +A  FE +LTAA+ +    L++      V++LSAELD   ++   K ++R +LA + ++    KK+ +                    +GG KVV R DFG + K A  ++    K
Sbjct:  645 DQKGSLVDETKLRFDFSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVSDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGEAKKAIALANEFESKLTAAEVVQGDDLEST-----VKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAYKKQKL--------------------AGGSKVVMRFDFGVEGKVAKSVMTAFGK 879          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S4ME88_9STRA (Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ME88_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.210e-58
Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 1
Query:   28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSK 801
            DQKGS VD+ KLRFDFSW+G L P Q A VED++N  I   +P+ ++VAPL+ A+ I SLR+VFGE YPDPVRV+SV  + +P ILQ+P++  W   SVEFCGGTHL+NT EAE F LL+E GIAKGVRRI AVT G A+ A + A  FE +L  A A+    L+A      V++LS EL    +S+  K+ ++  L  L +KA   KK+    R  + V+   + A    E+GG+K+  R DFG D K A  +    +K
Sbjct:  639 DQKGSLVDELKLRFDFSWNGPLKPAQLAAVEDMINSRISAGVPIQSFVAPLEDAKQISSLRAVFGEVYPDPVRVVSVSPEPIPEILQNPQDGQWLQYSVEFCGGTHLSNTKEAEMFVLLKEEGIAKGVRRITAVTGGDAKAAGERADEFEGRLKEAGALPGAELEAG-----VKKLSEELKDLSISVARKDGFKTELGKLTKKAMAWKKEQAAARTKEVVEQLVSAAN---EAGGNKIALRIDFGIDGKVAKSVAQSFAK 890          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A7S4GJP2_9EUGL (Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJP2_9EUGL)

HSP 1 Score: 202 bits (515), Expect = 1.020e-55
Identity = 118/263 (44.87%), Postives = 165/263 (62.74%), Query Frame = 1
Query:   19 GMCDQKGSFVDDEKLRFDFSWSGALSPEQAQ-VEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKSATKILAEVSKA 804
            G+ DQKGS  D++KLRFDFSW+G + PEQ Q VE  VN  I  + PV A    L+QA+ I SLRSVFGE+YPDPVRV+SVG +V  ++ +P+N  W   S+EFCGGTH+ N++EAE F ++EE GIAKGVRRIVAVTR  AR+A   A +  +++ A  A+ D  LDA      V+    EL  + + +  K      +  L+++ K  +K++ +E+  + +       E+ KE+G   VV R DFG D K  +K+L E +KA
Sbjct:  706 GLVDQKGSLCDEQKLRFDFSWNGPVGPEQLQRVEAQVNACIDAAQPVDALPVALEQAKFIYSLRSVFGEQYPDPVRVVSVGNNVSAMVDEPQNKDWAAGSIEFCGGTHIANSAEAERFVIMEESGIAKGVRRIVAVTRSKAREAIANAAALREKVKAVAALPDAELDAA-----VKVFQKELLATPVGVVDKGALGKEVETLIKRVKKYQKQLEKEKEAEVLGKILPAVEEAKENGKGVVVLRLDFGTDGKLGSKLLKEATKA 963          
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Match: A0A8J9T9Q1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9Q1_PHATR)

HSP 1 Score: 199 bits (505), Expect = 1.120e-55
Identity = 112/209 (53.59%), Postives = 147/209 (70.33%), Query Frame = 1
Query:   28 DQKGSFVDDEKLRFDFSWSGALSPEQ-AQVEDVVNDHIKQSLPVHAYVAPLDQAQSICSLRSVFGERYPDPVRVLSVGKD-VPTILQDPENSAWYDVSVEFCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFEQQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAILVQKAKVIKK 648
            DQKGS VD+ KLRFDFSWSG L+PEQ A+VE +  D I  ++PV AYVAPL  AQ I SLR+VFGE+YPDPVRV++V    VP +L +P++S W + SVEFCGGTHLTNT EAE+F LL E GIAKG+RRI A+T G A+ A  +A  FE +LTAA+ +    L++      V++LSAELD   ++   K ++R +LA + ++    KK
Sbjct:  449 DQKGSLVDETKLRFDFSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVSDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGEAKKAIALANEFESKLTAAEVVQGDDLEST-----VKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAHKK 652          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15175.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP9_ECTSI3.210e-12273.63Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L0C8_9PHAE2.260e-10172.15Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A6V2XN65_HETAK4.940e-6749.43Alanine--tRNA ligase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5N9_9STRA5.870e-6748.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z4U5_9STRA9.940e-6749.43Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
W7TIB5_9STRA1.220e-5954.76Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
B7G5M3_PHATC9.290e-5947.69Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S4ME88_9STRA9.210e-5847.69Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4GJP2_9EUGL1.020e-5544.87Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J9T9Q1_PHATR1.120e-5553.59Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15175contigH-elongata_contig15175:344..4595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue5.8e-53
Seed eggNOG ortholog2850.Phatr47999
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
EggNOG OGs2XACW@2836,COG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons8
Model size816
Cds size795
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.3504417-CDS-H-elongata_contig15175:343..4271622929897.3504417-CDS-H-elongata_contig15175:343..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 344..427 -
1691679199.5582893-CDS-H-elongata_contig15175:343..4271691679199.5582893-CDS-H-elongata_contig15175:343..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 344..427 -
1622929897.3655055-CDS-H-elongata_contig15175:724..8261622929897.3655055-CDS-H-elongata_contig15175:724..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 725..826 -
1691679199.5698426-CDS-H-elongata_contig15175:724..8261691679199.5698426-CDS-H-elongata_contig15175:724..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 725..826 -
1622929897.381943-CDS-H-elongata_contig15175:1474..15671622929897.381943-CDS-H-elongata_contig15175:1474..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 1475..1567 -
1691679199.578732-CDS-H-elongata_contig15175:1474..15671691679199.578732-CDS-H-elongata_contig15175:1474..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 1475..1567 -
1622929897.392811-CDS-H-elongata_contig15175:2007..21601622929897.392811-CDS-H-elongata_contig15175:2007..2160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 2008..2160 -
1691679199.5915496-CDS-H-elongata_contig15175:2007..21601691679199.5915496-CDS-H-elongata_contig15175:2007..2160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 2008..2160 -
1622929897.4042554-CDS-H-elongata_contig15175:2779..28991622929897.4042554-CDS-H-elongata_contig15175:2779..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 2780..2899 -
1691679199.6018176-CDS-H-elongata_contig15175:2779..28991691679199.6018176-CDS-H-elongata_contig15175:2779..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 2780..2899 -
1622929897.4162836-CDS-H-elongata_contig15175:3476..35571622929897.4162836-CDS-H-elongata_contig15175:3476..3557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 3477..3557 -
1691679199.6096966-CDS-H-elongata_contig15175:3476..35571691679199.6096966-CDS-H-elongata_contig15175:3476..3557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 3477..3557 -
1622929897.4321606-CDS-H-elongata_contig15175:4106..41801622929897.4321606-CDS-H-elongata_contig15175:4106..4180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 4107..4180 -
1691679199.6177528-CDS-H-elongata_contig15175:4106..41801691679199.6177528-CDS-H-elongata_contig15175:4106..4180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 4107..4180 -
1622929897.4477923-CDS-H-elongata_contig15175:4486..45741622929897.4477923-CDS-H-elongata_contig15175:4486..4574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 4487..4574 -
1691679199.6263874-CDS-H-elongata_contig15175:4486..45741691679199.6263874-CDS-H-elongata_contig15175:4486..4574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15175 4487..4574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.4640095-UTR-H-elongata_contig15175:4574..45951622929897.4640095-UTR-H-elongata_contig15175:4574..4595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15175 4575..4595 -
1691679199.6352444-UTR-H-elongata_contig15175:4574..45951691679199.6352444-UTR-H-elongata_contig15175:4574..4595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15175 4575..4595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15175.3423.1prot_H-elongata_contig15175.3423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15175 344..4574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15175.3423.1

>prot_H-elongata_contig15175.3423.1 ID=prot_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MCDQKGSFVDDEKLRFDFSWSGALSPEQAQVEDVVNDHIKQSLPVHAYVA
PLDQAQSICSLRSVFGERYPDPVRVLSVGKDVPTILQDPENSAWYDVSVE
FCGGTHLTNTSEAESFALLEEGGIAKGVRRIVAVTRGMARDASDMARSFE
QQLTAADAINDLSLDALASKALVRRLSAELDTSVMSLKSKNKYRVRLAIL
VQKAKVIKKKVMEERVGQAVDMGKTEAEKVKESGGDKVVFRKDFGCDAKS
ATKILAEVSKACPYL
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mRNA from alignment at H-elongata_contig15175:344..4595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15175.3423.1 ID=mRNA_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4252bp|location=Sequence derived from alignment at H-elongata_contig15175:344..4595- (Himanthalia elongata Himel1 dioecious)
GTCCTTCGTCCAAGCGATGGTATGTGTGACCAGAAGGGCTCCTTCGTCGA CGACGAGAAGCTGCGCTTCGATTTCTCTTGGTCTGGGGCGCTCTCTCCGG AGCAGGCGCGTCCTGAGCGGTTATCGGTTAGCTGTCGTATCGCGTTTGCA TTACGTTTCGGTGTACTGACTTGAAGGTCAGATGTCAGATGTTGGTCATC TCTTCATGGCTTCGAGTTTCCCTTTCCCCTTCACATTTTATGCTTGTCGA TGTGGGCATGTTTCGAGCAAACATGGTGCACTATACCTCTTCGCTTGAGA TAGCTTACAATGGAGGTACTGATACTGATACGCGTTGAATGGCGAGTGAC CGGCCTTAAACGTTTCGTTCTGACGTCAAACCGACGTATCAACGGGCGTT TTATTTAGGTGGCAGAGGTGGAGGATGTGGTGAACGATCACATCAAGCAG AGCCTACCTGTGCATGCTTACGTGGCGCCCCTCGACCAGGTCAAGTCAAG TCAAGTCAAGACAGCTGGCGTTCTAATCCATGATCTAATACATGCCACGG CGGTAGATAGACGTCAAACGCAACATAACAGCCCCCTAAAGAAACGGAGA AGATGTGATAATTAATCAATAAACGAGAGTTACGTCTGGTATCGCTTGAA GTCACTGAAGGAAGGGAAGGGAAGGCTGGTTGTACGTGACGACGTGGGCG CGCTTTCGGGGCATTAAAGTTTACCAAACATGACACGACGTAGGATGCTA GAGACTAGAAAAATATATCGGAAATCTCTATAATAGTCTACGAACCCTAA ATTGTAATAACAGTACAACGTTTATTAGAGAAAACCACGCCACTAACGAC TTCTGCATCTGGTGGATGTCGTGGATTATGTATGATTATAGTTGAGTAAT AGCTGGGGCGATGCTATGTTATATAAGACGTCGCGAGTGTGGCGCTCTCC TTCCCTTTTGACCAATAATTTTGAGCACCATGCGGATGCACCATGTACCT TATATATGTTACGTTATACCTTGTATATTGTATCCCAGGCCCAAAGTATT TGCAGCCTTCGGAGCGTTTTTGGGGAAAGATATCCCGATCCAGTGCGAGT GCTGAGCGTCGGCAAGGATGTAAGTTACATTCTATAATATACTACCTGGT ATACTATACTATACCATACTATACTCTATATACGATATAGTAGAGTGTAG TATTATTATAAATAGTATTATATTGAGTATTATATATTTCCCCGCTTTGT ACGAAAATGATTCATAGTCAAAGGTGGACATCAAACTGCCATCGCTCTGA CCGGTACCGTTACCGGTGGAGAATCGGAGTTAATGTCACGGAAGTGTTTT AGCTTAAGGGAGGAGGTGCTTCAGTTTTACACTATTAATAGCCCATAACG CTCACGTCGCGATGGAAAACTGCTTTTGACGTGTTACTCCTCCACCCAAT CATGATACTATAATAACGAGACCTTAAGCTCTGAGAACGGACCGTAGTAC CGCCATTTAATACCGCCAGCCTCAACCTCAGAGGTCGATCGAAATATTCA TGTCGATCGTAATATTTCACTCCACACCTTCAAAAGCACACGGCCCAGGT GTGTCGTTACTCGGTTTCCTCCTTCCTCCTTCCTCCGTCCTCCTTGGTGC GTACTGGTACTGGTACGGATATGGCGTGGGCTGTCCACGCCCGCAGGTGC CGACGATACTTCAAGACCCGGAAAATTCGGCCTGGTACGACGTTTCGGTG GAGTTCTGCGGCGGGACTCACTTAACCAACACGTCCGAGGCTGAAAGCTT CGCCCTTCTTGAGGAGGTGATAATGAGCAATACTGTATGCAGTATATTAT ATACAACGCTACGCGAACGATTAGTATTAACAGTAGTCTTTATTAGCAGT AGCTGTATGCTATACTTACTAATATGAGGATGGAAGATATCTACTAATAT GGTCGACTTTTACATCCTTGGAGCAAGACGAAATCATGAGATATACCTAC CATTACCATACTATTACTATACAATCAATGAGCTGCGTCTACCATCTTCA ACAAGTCCGAATCCGCGCTTTTTGCGTTCTTGCCTCCAAACTAGAACTAT TAATAAAACATGAACTATTAATAATGTACTTCTCGTTATATACATTTCTG AACGTTAGGTGCTAGCAATATAGATATAGTGCCGGATACGCTGCTCTTGC GAATAATAGTTTGCATACATATATTCATATATTCCACATGTCACCGACGT ATTTCGGCCCCTTTGACCTTGGTCTATGCTAGCCCGAGGTGGGCGATGGC GGCATTGAACTGTGATAGACGAGGCACAAAGCTACTAATCCGACCCCCTT GTTGAATACAGCGAAGCAATCAACTACCAAATGAGAGTGATACTGAGAAC CAAGCGCTGGCGATGACGTCCCTTGTGTGAAGCAGGGCGGGATCGCCAAG GGTGTGCGACGCATCGTGGCGGTGACTCGAGGGATGGCTCGTGATGCAAG CGACATGGCTCGTTCTTTCGAACAGCAGCTAACCGCGGCCGATGCAATTA ATGATCTCTCTCTGGATGCTTTGGCAAGTAAAGCATTGGTCAAGTGATGT GATTGGTTGTGTTGCCATCCCATATATTCTGGATGTCAGACTTGTGTAAT GTAGGAATGTCACACATTATTTTTCCACCTTCTTTCTGCGGTGCTTGCCT TATTTATTTTTTTATCGCGATAATAGAAGGATTCAGCCGTCCGTTTCTAT CGCCAATCGTGAAGTATGTCGAATTTATGTGAGAAAAAATCCTAGTTCGT TTGACTACGCCGAGATTCGAACTCACGTCCCAACATCAGAAGGTTTCGTG GTAACAACTGATTCACCGCTGCTATATAAGATGGACTATTACTAGACCAA TGGGACTTGGCAAGACTTTCGGGCGATCTCGTAATGATAGTCGTTGTTGG CTATTTTTGCTTGCTGTTGTAATTGTAACTGTCGGAAGAGGGACTGATTG TTACTGTCCTGAAATGTTAATGTCGCAGGTTCGACGTCTGAGTGCGGAGT TGGACACTTCAGTGATGTCTCTCAAGTCCAAAAACAAGTACCGTGTCCGT CTCGCCATTCTGGTCCAAAAGGTACGGTATAAATGGGTGGGTAGCTATGT TCCATATGTATGTAGGCGTTTGCATACCTGCAACATAATATCACCAATAT CATTGCCATATATATATATAGCTATGACTATTGTGATTACCAGCACCTAT CAAGATTGCCCTGGGTAGTACCATTTTATCTCTGTTGCGGGTGCTATCAC GAAAGCCGTTTGTGTAACGATGCCCATTACTGCCGGCATAAATGTAACCA TGACCATCTCTGCTGTAATATAATCCCCATTTTGTCATATCATTCACCCC TTAATGTACGTTAATATGTTATTTGACTTCGGGTCTGCGGTGCGGTTGCG GTAGTGACATGGACTTTCTCTGAAATGTAGTAGTAGTAGTAGTAGTCGTA GTAATATTGCCACGGCCAAGAGGATGAGCAGTGAGGAACCATTAGTTGGT TGCCAGCTGATGCTCTTACATTATAGCTGCCAGGTGCTCTCTCTTTTTCT GGTGCGGTATTATCGAGCCTTGAAGCCGTGAAGCGGTGTTAACCACGCAC ACTTACTATACTATATACAGCATACCATATAAAGATGATTTGAAAAGATG GACATGCCTCGGGATGGGCGAGTATGGCACAATCACACACGATGGTGGAT GGTGGACGGTGTTGGGCAGGCTAAAGTCATCAAGAAGAAGGTGATGGAGG AGCGTGTGGGTCAAGCAGTAGACATGGGCAAGACGGAAGCTGAGAAGGTC AAGGAATCCGGCGGAGATAAGGTGCTCCCGATTAACGGTCGTTACCTCGA GAGCTTGACCCATTGTGCCACGCTACGGTTAAATGATTAGACCATTAGAC CACCTTACGATCGAATCATTAGATCATTGGGCTATTAATAGTGCCTTACC TGCGAGCGCGATAGCTGCAATGGGAGTACTCTCAGTTTTTTTTTGAAGTC TTGTGCTCCATATATGTTGCCCCCTTGCCCCTCGTCCAGCATCCAATCAT TAATCCTCCATCATTTTCCAGCAATGTTCAAAACCGATCCTCGTACTAAT CGATATATCAAATGACAGGTTGTTTTCCGTAAGGACTTCGGGTGCGACGC AAAGTCGGCCACCAAGATTCTTGCGGAGGTGTCCAAGGCATGCCCGTACC TG
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Coding sequence (CDS) from alignment at H-elongata_contig15175:344..4595-

>mRNA_H-elongata_contig15175.3423.1 ID=mRNA_H-elongata_contig15175.3423.1|Name=mRNA_H-elongata_contig15175.3423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig15175:344..4595- (Himanthalia elongata Himel1 dioecious)
ATGTGTGACCAGAAGGGCTCCTTCGTCGACGACGAGAAGCTGCGCTTCGA
TTTCTCTTGGTCTGGGGCGCTCTCTCCGGAGCAGGCGCATGTGTGACCAG
AAGGGCTCCTTCGTCGACGACGAGAAGCTGCGCTTCGATTTCTCTTGGTC
TGGGGCGCTCTCTCCGGAGCAGGCGCAGGTGGAGGATGTGGTGAACGATC
ACATCAAGCAGAGCCTACCTGTGCATGCTTACGTGGCGCCCCTCGACCAG
AGGTGGAGGATGTGGTGAACGATCACATCAAGCAGAGCCTACCTGTGCAT
GCTTACGTGGCGCCCCTCGACCAGGCCCAAAGTATTTGCAGCCTTCGGAG
CGTTTTTGGGGAAAGATATCCCGATCCAGTGCGAGTGCTGAGCGTCGGCA
AGGATGCCCAAAGTATTTGCAGCCTTCGGAGCGTTTTTGGGGAAAGATAT
CCCGATCCAGTGCGAGTGCTGAGCGTCGGCAAGGATGTGCCGACGATACT
TCAAGACCCGGAAAATTCGGCCTGGTACGACGTTTCGGTGGAGTTCTGCG
GCGGGACTCACTTAACCAACACGTCCGAGGCTGAAAGCTTCGCCCTTCTT
GAGGAGGTGCCGACGATACTTCAAGACCCGGAAAATTCGGCCTGGTACGA
CGTTTCGGTGGAGTTCTGCGGCGGGACTCACTTAACCAACACGTCCGAGG
CTGAAAGCTTCGCCCTTCTTGAGGAGGGCGGGATCGCCAAGGGTGTGCGA
CGCATCGTGGCGGTGACTCGAGGGATGGCTCGTGATGCAAGCGACATGGC
TCGTTCTTTCGAACAGCAGCTAACCGCGGCCGATGCAATTAATGATCTCT
CTCTGGATGCTTTGGCAAGTAAAGCATTGGGCGGGATCGCCAAGGGTGTG
CGACGCATCGTGGCGGTGACTCGAGGGATGGCTCGTGATGCAAGCGACAT
GGCTCGTTCTTTCGAACAGCAGCTAACCGCGGCCGATGCAATTAATGATC
TCTCTCTGGATGCTTTGGCAAGTAAAGCATTGGTTCGACGTCTGAGTGCG
GAGTTGGACACTTCAGTGATGTCTCTCAAGTCCAAAAACAAGTACCGTGT
CCGTCTCGCCATTCTGGTCCAAAAGGTTCGACGTCTGAGTGCGGAGTTGG
ACACTTCAGTGATGTCTCTCAAGTCCAAAAACAAGTACCGTGTCCGTCTC
GCCATTCTGGTCCAAAAGGCTAAAGTCATCAAGAAGAAGGTGATGGAGGA
GCGTGTGGGTCAAGCAGTAGACATGGGCAAGACGGAAGCTGAGAAGGTCA
AGGAATCCGGCGGAGATAAGGCTAAAGTCATCAAGAAGAAGGTGATGGAG
GAGCGTGTGGGTCAAGCAGTAGACATGGGCAAGACGGAAGCTGAGAAGGT
CAAGGAATCCGGCGGAGATAAGGTTGTTTTCCGTAAGGACTTCGGGTGCG
ACGCAAAGTCGGCCACCAAGATTCTTGCGGAGGTGTCCAAGGCATGCCCG
TACCTGGTTGTTTTCCGTAAGGACTTCGGGTGCGACGCAAAGTCGGCCAC
CAAGATTCTTGCGGAGGTGTCCAAGGCATGCCCGTACCTG
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