mRNA_H-elongata_contig151709.3422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151709.3422.1
Unique NamemRNA_H-elongata_contig151709.3422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.100e-33
Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 VHVRLGGS--YSGLDQDDDSIDSMDCTGSYAVWAVTADRDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKAL 345
            VHVRLGG     G   D+ S+ S     SYAVWAVTA RDA     GV RV CSEMAQTEVP SA+QRVQCEEEALAALVKARC LD+ +PAL +L  + + PES++ WTL QVRTLE+AL
Sbjct:  570 VHVRLGGKGDKGGTPGDESSVAS-----SYAVWAVTAGRDAGSNARGVARVGCSEMAQTEVPISAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQAL 685          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 9.600e-33
Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 VHVRLGGS--YSGLDQDDDSIDSMDCTGSYAVWAVTADRDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKAL 345
            +HVRLGG     G   D  S+ S     SYAVWAVTA R+A     GV RV CSEMAQTEVP SA+QRVQCEEEALAALVKARC LD+ +PAL +L  + + PES++ WTL QVRTLE+AL
Sbjct:  368 IHVRLGGEGDKGGTPGDKSSVAS-----SYAVWAVTAGRNAGSNARGVARVGCSEMAQTEVPMSAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQAL 483          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.880e-30
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEF 357
            VHVRLG S S    D     S+    SYAVWA+TA R + GV RVACSEMAQT VP SAVQRVQ EEEALAALVKARC LD+  PAL +L   S+  ESV  WTL+QVRTLE+ L+ EF
Sbjct:  419 VHVRLGDSGSAAKGDKGVTTSV--ASSYAVWAITAGRHSPGVTRVACSEMAQTNVPMSAVQRVQSEEEALAALVKARCTLDDFRPALKVLDQAST--ESVAPWTLSQVRTLEQVLEKEF 533          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.840e-29
Identity = 70/121 (57.85%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTAD-RDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
            +HVRLGG     D             SYAVWA+T     A G VRVACSE+AQTE+P SA+QR  CEEEAL ALVK  CVLDN EPAL +LA++++ PESV+ W+L QVRTLE ALD +FD
Sbjct:  562 IHVRLGGKNE--DGXXXXXXXXXXXXSYAVWALTTGVSSASGDVRVACSEIAQTEIPASAIQR--CEEEALEALVKTNCVLDNFEPALKMLADSTTSPESVQPWSLDQVRTLEAALDKDFD 678          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.290e-27
Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEF 357
            VHVRLG   S    D     S+    SYAVWA+ A R + G VRVACSEMAQT VP SAVQRVQ EEEALAALVKARC LD+  PAL +L  + +  +SV  W L+QVRTLE+ L+ EF
Sbjct:  574 VHVRLGDRGSAAKGDKGVTTSV--ANSYAVWAIMAGRHSAGAVRVACSEMAQTTVPISAVQRVQSEEEALAALVKARCTLDDFRPALKVL--DQASLDSVAPWALSQVRTLEQVLEKEF 688          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.850e-25
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
            VHVRLG + S  + + ++  +    GSYAVWA+T    + GV+RVACSE+AQT+VP  A+QRVQ EE+AL ALVKARC LD+ +PAL +   + +  ESV+ W L+QVR L++AL++ FD
Sbjct:  576 VHVRLGDAGSKNNGNVEAA-TTSVAGSYAVWAITVGCHSAGVIRVACSEIAQTKVPIPAIQRVQSEEQALGALVKARCTLDDFKPALKVF--DQASMESVDPWKLSQVRNLKQALEEHFD 692          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.840e-23
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVR 327
            VHVRLG   S    D ++  +     SYAVWA+T  R + GV+RVACSEMAQT+VP  A+QRVQ EE+ALAALVKARC LD+ +PAL++   + +  ESV+ W L+QVR
Sbjct:  499 VHVRLGDGGSEKTGDVEA-GTTSVASSYAVWAITVGRHSAGVIRVACSEMAQTKVPIPAIQRVQSEEQALAALVKARCTLDDFKPALNVF--DQASMESVDPWKLSQVR 604          
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.720e-13
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  193 CEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
            CEE AL ALVK  CVLDN EPAL +LA++++ PES++ W+L QVRTLE ALD +FD
Sbjct:  517 CEEAALEALVKTNCVLDNFEPALKMLADSTTSPESLQPWSLDQVRTLEAALDKDFD 572          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JX23_9PHAE1.100e-3363.64BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E3_ECTSI9.600e-3361.98ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI1.880e-3063.03ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE7.840e-2957.85BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVI2_9PHAE1.290e-2758.82ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE1.850e-2551.67ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW2_ECTSI1.840e-2355.05ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E4_ECTSI4.720e-1364.29BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151709contigH-elongata_contig151709:514..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151709.3422.1prot_H-elongata_contig151709.3422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151709 514..1451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.2815416-CDS-H-elongata_contig151709:513..7051622929897.2815416-CDS-H-elongata_contig151709:513..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 514..705 +
1691679199.530897-CDS-H-elongata_contig151709:513..7051691679199.530897-CDS-H-elongata_contig151709:513..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 514..705 +
1622929897.2922335-CDS-H-elongata_contig151709:1137..12661622929897.2922335-CDS-H-elongata_contig151709:1137..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 1138..1266 +
1691679199.53973-CDS-H-elongata_contig151709:1137..12661691679199.53973-CDS-H-elongata_contig151709:1137..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 1138..1266 +
1622929897.3051815-CDS-H-elongata_contig151709:1412..14511622929897.3051815-CDS-H-elongata_contig151709:1412..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 1413..1451 +
1691679199.5484214-CDS-H-elongata_contig151709:1412..14511691679199.5484214-CDS-H-elongata_contig151709:1412..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151709 1413..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151709.3422.1

>prot_H-elongata_contig151709.3422.1 ID=prot_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEM
AQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESV
EQWTLTQVRTLEKALDDEFD
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mRNA from alignment at H-elongata_contig151709:514..1452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151709.3422.1 ID=mRNA_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig151709:514..1452+ (Himanthalia elongata Himel1 dioecious)
GTTCATGTGCGATTGGGTGGCAGCTACAGTGGTCTTGACCAAGATGATGA CTCCATAGATAGCATGGATTGCACTGGAAGCTACGCCGTGTGGGCCGTCA CCGCCGACCGCGACGCCTGCGGTGTAGTAAGGGTAGCATGTTCAGAAATG GCCCAGACCGAGGTCCCAAGATCTGCAGTCCAAAGAGTGCAGGTGAGGTG GCAAGGCTACAAAGTGAAGATACACGTGCCTACGCTTGATTTCCACTGGA CAGGCACGGTGTGAACAAGCACTAAAATTATAGTGTAAGTATCGTTATTT ACGACGTACGCGTAGGGAGCACCTCTCTCTGATGCGTGGCATACATCAAT TAAATTATGCTCCTTTTGGTGTAATCCTTCACCAAATTGATAGTTTCAAA TAATCCGGCCATTATGATCTAGAGCTAAGCTGAGATATATATATATATAT ATATATATATTTCCCCCGTGCGCCCTCTTTCAGCCGACTTAGGGATTCCA CTACGCTAGGCTCTGAGCGATATAGTCAACACGGCCCTCTGCTCGCATGC GCCCGTGGGCCATTCCTCGGCGAGATGTCTTTGACCCCCTCAAGAATTGT CATCATTGTAACTTGCTCGAACAGTGCGAGGAGGAGGCCCTGGCTGCCTT GGTAAAGGCCCGGTGCGTTCTCGATAATGCCGAGCCAGCACTAAGCCTCC TTGCCAACAACTCGTCTGGTCCCGAGAGCGTGGAACAATGGACGCTCACC CAGGTGAAATGGCCCTAGACTAGAATTGGAGTAATATCTAAGATCTCTGA AATTCCTAAGCTTGGAAAGGACCACCGATGCAATCGACGGGATCGTCAGC AAATTATCCAGGTCACAATTGTCATCTGCGTTGTATTCTACCTCTTTAGG TGCGAACGCTCGAAAAGGCTCTAGATGATGAGTTTGACC
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Coding sequence (CDS) from alignment at H-elongata_contig151709:514..1452+

>mRNA_H-elongata_contig151709.3422.1 ID=mRNA_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig151709:514..1452+ (Himanthalia elongata Himel1 dioecious)
GTTCATGTGCGATTGGGTGGCAGCTACAGTGGTCTTGACCAAGATGATGA
CTCCATAGATAGCATGGATTGCACTGGAAGCTACGCCGTGTGGGCCGTCA
CCGCCGACCGCGACGCCTGCGGTGTAGTAAGGGTAGCATGTTCAGAAATG
GCCCAGACCGAGGTCCCAAGATCTGCAGTCCAAAGAGTGCAGGTTCATGT
GCGATTGGGTGGCAGCTACAGTGGTCTTGACCAAGATGATGACTCCATAG
ATAGCATGGATTGCACTGGAAGCTACGCCGTGTGGGCCGTCACCGCCGAC
CGCGACGCCTGCGGTGTAGTAAGGGTAGCATGTTCAGAAATGGCCCAGAC
CGAGGTCCCAAGATCTGCAGTCCAAAGAGTGCAGTGCGAGGAGGAGGCCC
TGGCTGCCTTGGTAAAGGCCCGGTGCGTTCTCGATAATGCCGAGCCAGCA
CTAAGCCTCCTTGCCAACAACTCGTCTGGTCCCGAGAGCGTGGAACAATG
GACGCTCACCCAGTGCGAGGAGGAGGCCCTGGCTGCCTTGGTAAAGGCCC
GGTGCGTTCTCGATAATGCCGAGCCAGCACTAAGCCTCCTTGCCAACAAC
TCGTCTGGTCCCGAGAGCGTGGAACAATGGACGCTCACCCAGGTGCGAAC
GCTCGAAAAGGCTCTAGATGATGAGTTTGACGTGCGAACGCTCGAAAAGG
CTCTAGATGATGAGTTTGAC
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