mRNA_H-elongata_contig15102.3391.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15102.3391.1
Unique NamemRNA_H-elongata_contig15102.3391.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: D7G777_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G777_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.910e-53
Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
             GKP WF++LNPKGEVPVLVVDG  I+GSEET+D LM G L+P      + RWR+++N+RLK  GK+AV SGG   DR  L AVL+DL+ACL+       E               FTAAD SAFPFL RV  E+GFP+ C RLE WY SAS RP  RKT+K
Sbjct:   10 GGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELSPE-----ALRWRSIVNDRLKSAGKRAVFSGGSETDRNSLNAVLQDLEACLSNGPERASE---------------FTAADASAFPFLQRVHGEFGFPSECKRLEAWYASASSRPGVRKTIK 151          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A835ZAS3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.780e-33
Identity = 77/166 (46.39%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVV-DGNVIIGSEETIDHLMQ--GPLNPVE--HRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTV 483
             GKP WF  LNPKGEVPVLV  DG VI  SE  +DHL +   PL P        ++  R L+N RLKP GK+AVL    +A  A L+A L ++DA LA               GP+ CG AF AAD SAFPFL RVR+E+GFP     LE W  +   R   R T+
Sbjct:   46 GGKPAWFTALNPKGEVPVLVTADGAVIADSEAILDHLARPNSPLAPPPPCRAAHAAALRALVNARLKPAGKRAVLRPSPAAT-AELMAALREIDAALATP-------------GPYACGDAFCAADASAFPFLWRVRKEFGFPDGARALEAWADACEARAGVRATL 197          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S1A063_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A063_NOCSC)

HSP 1 Score: 105 bits (262), Expect = 3.080e-25
Identity = 61/166 (36.75%), Postives = 89/166 (53.61%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPAS-CARLEEWYTSASRRPSARKTVK 486
            +GKP WF+ LNP+G+VPVLVVDGN +I SE  +D +    Q    P  H  + ++WR  I +R+ P GK  VL GG S ++A L A L +L+  L            ++  G +  G +F+ AD +A PF+ R+ EE+  P      L  W+    RR    KT++
Sbjct:   48 NGKPPWFLRLNPRGQVPVLVVDGNAVIDSESILDWIATEAQHMAPPDAH--LGAQWRRCIGQRVAPGGKALVLGGG-SQEKAILHAALRELEEIL------------QEGRGAYAAGGSFSVADAAAVPFMQRLCEEFDLPGDDTPLLRAWWERVKRRDGVAKTLQ 198          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A6U5F3A3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F3A3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.460e-23
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---------QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVL---EDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
            +GKP +F ELNP G VPV+V   +V+  SE+ +D+L          +G    V +      WR+L+  ++ PVGK+AV +    +D   L A+L   ED          ++G+       GP++CGA  ++AD +AFPF  R+  E+GFPA C +L+ W  +    P  +KTV+
Sbjct:   33 NGKPDFFWELNPAGTVPVMVSCNDVVCDSEDILDYLNVDGEDTDGGEGGEEGVAY------WRSLVKNKISPVGKRAVFA----SDPTELFALLVGNEDAGG------GVDGKIV-----GPYLCGAVPSSADCAAFPFFWRIESEFGFPAECNKLKSWLNTCLSNPKFKKTVQ 185          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A0G4FU02_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU02_VITBC)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-22
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQ-GPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYG------FPASCARLEEWYTSASRRPSARKT 480
             GKP+WF++LNPKG VPVLV+DG  +  SE T+D + +  P       +   +WR ++ +RL PVGK AVL+   S + A L  V+ + +A L +          +   G F+CG A + ADVSA PF  R++EE        FP +     EW  +   R + R+T
Sbjct:   30 GGKPKWFLDLNPKGLVPVLVIDGQPVAESEATLDAIAELAPSLATPTPSKRQQWRDMLEQRLIPVGKAAVLNPS-SKNMAALRVVIAEWEAKLRE----------RPGKGHFLCGEALSIADVSAVPFWSRLQEEMDCVGAEEFPLT----HEWLAACRAREAVRRT 181          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A6U5F461_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F461_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.750e-22
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---------QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVL---EDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
            +GKP +F ELNP G VPV+V   +V+  SE+ +D+L          +G    V +      WR+L+  ++ PVGK+AV +    +D   L A+L   ED          ++G+       GP++CGA  ++AD +AFPF  R+  E+GFPA C +L+ W  +    P  +KTV+
Sbjct:   85 NGKPDFFWELNPAGTVPVMVSCNDVVCDSEDILDYLNVDGEDTDGGEGGEEGVAY------WRSLVKNKISPVGKRAVFA----SDPTELFALLVGNEDAGG------GVDGKIV-----GPYLCGAVPSSADCAAFPFFWRIESEFGFPAECNKLKSWLNTCLSNPKFKKTVQ 237          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S0CP74_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CP74_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 2.240e-22
Identity = 62/170 (36.47%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVL-VVDGNVIIGSEETIDHL-------MQGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
             GKP WF +LNPKGEVPV+  +DG+V+  SE+T+D++       M+G ++  + R I++ WRT IN +LKP+GK+ V+ G    D   L  VL++L+  +                 P V G  FT AD SA PF  R+ +EY       RL +WY   S     + T +
Sbjct:   10 GGKPDWFWKLNPKGEVPVIQTLDGSVVADSEQTLDYIADNFAKDMRG-MSKEDMRLITA-WRTCINNKLKPIGKR-VVCGSERLD--SLHKVLQELEELVVT---------------PCVVGHQFTVADASAIPFFQRLEKEYELLKDYPRLSKWYKHTSSLEGVKSTFR 159          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7R9WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB00_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-21
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGN--VIIGSEETIDHLMQG--------PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYG---FPASCARLEEWYTSASRRPSARKTVK 486
             GKP WF++LNP G+VPVL   G   + I SE  +  +  G         ++  + R     WR  I  R+ P+GK AV  GG +     L+++L++LD  +                GP++CG   T AD +AFPFL R+ +E+G       C  + +W  + +  PS  KTV+
Sbjct:   77 GGKPDWFLDLNPDGQVPVLTCFGGAKIFIDSEYILSRIADGVVEGGSKLSMDSDDDREKMEEWRHAIANRVNPIGKAAVQRGGKNVKE--LMSLLKELDGKV---------------KGPYLCGETVTVADCAAFPFLWRINDEFGPLTDEEGCGNIRKWLDTCAENPSFSKTVQ 234          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S1R7Y9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R7Y9_ALECA)

HSP 1 Score: 92.8 bits (229), Expect = 5.140e-20
Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGN-VIIGSEETIDHLMQG-PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
             GKP WF++LNPKGE+PVL+  G   ++ SE+ +D + +  P    E     + +R  I+ R+ P GK  V+ GG  A         +DLD  L      +     +   G +  G  F+ AD +A PF+ R+ E YG P   A L  W+     RP    T++
Sbjct:   83 GGKPEWFMKLNPKGEIPVLIKSGGGAVVDSEKILDWVAKEVPEMSPEDAAAGTAFRRCISGRVAPAGKSRVIRGGGGAG--------DDLDKALG-----DLNDLLEASPGSYAAGDCFSVADAAAVPFVQRLDERYGLPEEAAALRRWWELVRARPGVAATLQ 233          
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S4K6F8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6F8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.650e-19
Identity = 55/175 (31.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query:    1 SGKPRWFIELNPKGEVPVLVVDGN--VIIGSEETIDHLMQG---------PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPAS--CARLEEWYTSASRRPSARKTVK 486
             GKP WF++LNP+G+VPVL   G   + I SE  +  +  G         P + V    +   WR  I+ R+ P+GK AV  GG + D   L+ +L+++D  +                GP++CG A T AD +AFPFL R+ +E+       C  + +W    +  P+  KT++
Sbjct:  107 GGKPDWFMDLNPEGQVPVLTCFGGAKIFIDSEYILTRIADGVVEGGSKLMPDSDVNKEKMEE-WRHDISNRVIPIGKLAVQKGGKNVDE--LMELLKEMDVKI---------------KGPYLCGDAVTVADCAAFPFLWRINDEWPLTEENGCENIRKWLDKCTANPAFAKTIQ 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G777_ECTSI1.910e-5354.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAS3_9STRA1.780e-3346.39Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S1A063_NOCSC3.080e-2536.75Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A6U5F3A3_9STRA5.460e-2334.48Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0G4FU02_VITBC1.030e-2236.53Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6U5F461_9STRA1.750e-2234.48Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0CP74_9EUKA2.240e-2236.47Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7R9WB00_9STRA3.100e-2132.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1R7Y9_ALECA5.140e-2032.32Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S4K6F8_9STRA6.650e-1931.43Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15102contigH-elongata_contig15102:6623..7132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue5.6e-17
Seed eggNOG ortholog227086.JGI_V11_142739
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG0406@1,KOG0406@2759
EC2.5.1.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_010770.1
Exons1
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.803329-CDS-H-elongata_contig15102:6622..71321622929893.803329-CDS-H-elongata_contig15102:6622..7132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15102 6623..7132 -
1691679198.4020057-CDS-H-elongata_contig15102:6622..71321691679198.4020057-CDS-H-elongata_contig15102:6622..7132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15102 6623..7132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15102.3391.1prot_H-elongata_contig15102.3391.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15102 6623..7132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15102.3391.1

>prot_H-elongata_contig15102.3391.1 ID=prot_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQGPLNPVEHRTIS
SRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEG
ETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTS
ASRRPSARKTVKKEWWWWW*
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mRNA from alignment at H-elongata_contig15102:6623..7132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15102.3391.1 ID=mRNA_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig15102:6623..7132- (Himanthalia elongata Himel1 dioecious)
TCAGGAAAGCCACGGTGGTTCATCGAGCTCAACCCCAAGGGCGAGGTTCC CGTGCTCGTTGTCGACGGCAATGTCATCATTGGATCGGAGGAGACTATCG ACCACCTCATGCAGGGGCCGCTCAATCCCGTCGAGCATCGCACCATTTCC TCGCGATGGCGCACCCTAATAAATGAGCGGTTGAAGCCTGTAGGCAAGAA AGCGGTACTGTCGGGCGGCTTAAGCGCCGATCGGGCTGGCTTAGTTGCCG TGCTCGAGGATCTCGACGCGTGCCTGGCAAAAGAGCAAAGGATAGAAGGA GAAACATTCAGGAAGGACAAGAGTGGACCGTTCGTGTGCGGCGCGGCCTT CACTGCCGCCGACGTATCCGCATTTCCCTTTCTCCATCGAGTGCGAGAGG AATACGGCTTCCCCGCGTCTTGCGCGCGCCTGGAGGAATGGTATACGTCC GCTTCCCGGCGCCCTTCCGCTCGTAAGACAGTGAAGAAGGAGTGGTGGTG GTGGTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig15102:6623..7132-

>mRNA_H-elongata_contig15102.3391.1 ID=mRNA_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig15102:6623..7132- (Himanthalia elongata Himel1 dioecious)
TCAGGAAAGCCACGGTGGTTCATCGAGCTCAACCCCAAGGGCGAGGTTCC
CGTGCTCGTTGTCGACGGCAATGTCATCATTGGATCGGAGGAGACTATCG
ACCACCTCATGCAGGGGCCGCTCAATCCCGTCGAGCATCGCACCATTTCC
TCGCGATGGCGCACCCTAATAAATGAGCGGTTGAAGCCTGTAGGCAAGAA
AGCGGTACTGTCGGGCGGCTTAAGCGCCGATCGGGCTGGCTTAGTTGCCG
TGCTCGAGGATCTCGACGCGTGCCTGGCAAAAGAGCAAAGGATAGAAGGA
GAAACATTCAGGAAGGACAAGAGTGGACCGTTCGTGTGCGGCGCGGCCTT
CACTGCCGCCGACGTATCCGCATTTCCCTTTCTCCATCGAGTGCGAGAGG
AATACGGCTTCCCCGCGTCTTGCGCGCGCCTGGAGGAATGGTATACGTCC
GCTTCCCGGCGCCCTTCCGCTCGTAAGACAGTGAAGAAGGAGTGGTGGTG
GTGGTGGTAGTCAGGAAAGCCACGGTGGTTCATCGAGCTCAACCCCAAGG
GCGAGGTTCCCGTGCTCGTTGTCGACGGCAATGTCATCATTGGATCGGAG
GAGACTATCGACCACCTCATGCAGGGGCCGCTCAATCCCGTCGAGCATCG
CACCATTTCCTCGCGATGGCGCACCCTAATAAATGAGCGGTTGAAGCCTG
TAGGCAAGAAAGCGGTACTGTCGGGCGGCTTAAGCGCCGATCGGGCTGGC
TTAGTTGCCGTGCTCGAGGATCTCGACGCGTGCCTGGCAAAAGAGCAAAG
GATAGAAGGAGAAACATTCAGGAAGGACAAGAGTGGACCGTTCGTGTGCG
GCGCGGCCTTCACTGCCGCCGACGTATCCGCATTTCCCTTTCTCCATCGA
GTGCGAGAGGAATACGGCTTCCCCGCGTCTTGCGCGCGCCTGGAGGAATG
GTATACGTCCGCTTCCCGGCGCCCTTCCGCTCGTAAGACAGTGAAGAAGG
AGTGGTGGTGGTGGTGGTAG
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