mRNA_H-elongata_contig15102.3391.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: D7G777_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G777_ECTSI) HSP 1 Score: 176 bits (445), Expect = 1.910e-53 Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
GKP WF++LNPKGEVPVLVVDG I+GSEET+D LM G L+P + RWR+++N+RLK GK+AV SGG DR L AVL+DL+ACL+ E FTAAD SAFPFL RV E+GFP+ C RLE WY SAS RP RKT+K
Sbjct: 10 GGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELSPE-----ALRWRSIVNDRLKSAGKRAVFSGGSETDRNSLNAVLQDLEACLSNGPERASE---------------FTAADASAFPFLQRVHGEFGFPSECKRLEAWYASASSRPGVRKTIK 151
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A835ZAS3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS3_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.780e-33 Identity = 77/166 (46.39%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVV-DGNVIIGSEETIDHLMQ--GPLNPVE--HRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTV 483
GKP WF LNPKGEVPVLV DG VI SE +DHL + PL P ++ R L+N RLKP GK+AVL +A A L+A L ++DA LA GP+ CG AF AAD SAFPFL RVR+E+GFP LE W + R R T+
Sbjct: 46 GGKPAWFTALNPKGEVPVLVTADGAVIADSEAILDHLARPNSPLAPPPPCRAAHAAALRALVNARLKPAGKRAVLRPSPAAT-AELMAALREIDAALATP-------------GPYACGDAFCAADASAFPFLWRVRKEFGFPDGARALEAWADACEARAGVRATL 197
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S1A063_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A063_NOCSC) HSP 1 Score: 105 bits (262), Expect = 3.080e-25 Identity = 61/166 (36.75%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPAS-CARLEEWYTSASRRPSARKTVK 486
+GKP WF+ LNP+G+VPVLVVDGN +I SE +D + Q P H + ++WR I +R+ P GK VL GG S ++A L A L +L+ L ++ G + G +F+ AD +A PF+ R+ EE+ P L W+ RR KT++
Sbjct: 48 NGKPPWFLRLNPRGQVPVLVVDGNAVIDSESILDWIATEAQHMAPPDAH--LGAQWRRCIGQRVAPGGKALVLGGG-SQEKAILHAALRELEEIL------------QEGRGAYAAGGSFSVADAAAVPFMQRLCEEFDLPGDDTPLLRAWWERVKRRDGVAKTLQ 198
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A6U5F3A3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F3A3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.460e-23 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---------QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVL---EDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
+GKP +F ELNP G VPV+V +V+ SE+ +D+L +G V + WR+L+ ++ PVGK+AV + +D L A+L ED ++G+ GP++CGA ++AD +AFPF R+ E+GFPA C +L+ W + P +KTV+
Sbjct: 33 NGKPDFFWELNPAGTVPVMVSCNDVVCDSEDILDYLNVDGEDTDGGEGGEEGVAY------WRSLVKNKISPVGKRAVFA----SDPTELFALLVGNEDAGG------GVDGKIV-----GPYLCGAVPSSADCAAFPFFWRIESEFGFPAECNKLKSWLNTCLSNPKFKKTVQ 185
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A0G4FU02_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU02_VITBC) HSP 1 Score: 98.6 bits (244), Expect = 1.030e-22 Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQ-GPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYG------FPASCARLEEWYTSASRRPSARKT 480
GKP+WF++LNPKG VPVLV+DG + SE T+D + + P + +WR ++ +RL PVGK AVL+ S + A L V+ + +A L + + G F+CG A + ADVSA PF R++EE FP + EW + R + R+T
Sbjct: 30 GGKPKWFLDLNPKGLVPVLVIDGQPVAESEATLDAIAELAPSLATPTPSKRQQWRDMLEQRLIPVGKAAVLNPS-SKNMAALRVVIAEWEAKLRE----------RPGKGHFLCGEALSIADVSAVPFWSRLQEEMDCVGAEEFPLT----HEWLAACRAREAVRRT 181
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A6U5F461_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F461_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.750e-22 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLM---------QGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVL---EDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
+GKP +F ELNP G VPV+V +V+ SE+ +D+L +G V + WR+L+ ++ PVGK+AV + +D L A+L ED ++G+ GP++CGA ++AD +AFPF R+ E+GFPA C +L+ W + P +KTV+
Sbjct: 85 NGKPDFFWELNPAGTVPVMVSCNDVVCDSEDILDYLNVDGEDTDGGEGGEEGVAY------WRSLVKNKISPVGKRAVFA----SDPTELFALLVGNEDAGG------GVDGKIV-----GPYLCGAVPSSADCAAFPFFWRIESEFGFPAECNKLKSWLNTCLSNPKFKKTVQ 237
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S0CP74_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CP74_9EUKA) HSP 1 Score: 97.1 bits (240), Expect = 2.240e-22 Identity = 62/170 (36.47%), Postives = 90/170 (52.94%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVL-VVDGNVIIGSEETIDHL-------MQGPLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
GKP WF +LNPKGEVPV+ +DG+V+ SE+T+D++ M+G ++ + R I++ WRT IN +LKP+GK+ V+ G D L VL++L+ + P V G FT AD SA PF R+ +EY RL +WY S + T +
Sbjct: 10 GGKPDWFWKLNPKGEVPVIQTLDGSVVADSEQTLDYIADNFAKDMRG-MSKEDMRLITA-WRTCINNKLKPIGKR-VVCGSERLD--SLHKVLQELEELVVT---------------PCVVGHQFTVADASAIPFFQRLEKEYELLKDYPRLSKWYKHTSSLEGVKSTFR 159
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7R9WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB00_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.100e-21 Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGN--VIIGSEETIDHLMQG--------PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYG---FPASCARLEEWYTSASRRPSARKTVK 486
GKP WF++LNP G+VPVL G + I SE + + G ++ + R WR I R+ P+GK AV GG + L+++L++LD + GP++CG T AD +AFPFL R+ +E+G C + +W + + PS KTV+
Sbjct: 77 GGKPDWFLDLNPDGQVPVLTCFGGAKIFIDSEYILSRIADGVVEGGSKLSMDSDDDREKMEEWRHAIANRVNPIGKAAVQRGGKNVKE--LMSLLKELDGKV---------------KGPYLCGETVTVADCAAFPFLWRINDEFGPLTDEEGCGNIRKWLDTCAENPSFSKTVQ 234
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S1R7Y9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R7Y9_ALECA) HSP 1 Score: 92.8 bits (229), Expect = 5.140e-20 Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGN-VIIGSEETIDHLMQG-PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPASCARLEEWYTSASRRPSARKTVK 486
GKP WF++LNPKGE+PVL+ G ++ SE+ +D + + P E + +R I+ R+ P GK V+ GG A +DLD L + + G + G F+ AD +A PF+ R+ E YG P A L W+ RP T++
Sbjct: 83 GGKPEWFMKLNPKGEIPVLIKSGGGAVVDSEKILDWVAKEVPEMSPEDAAAGTAFRRCISGRVAPAGKSRVIRGGGGAG--------DDLDKALG-----DLNDLLEASPGSYAAGDCFSVADAAAVPFVQRLDERYGLPEEAAALRRWWELVRARPGVAATLQ 233
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Match: A0A7S4K6F8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6F8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 6.650e-19 Identity = 55/175 (31.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 1 SGKPRWFIELNPKGEVPVLVVDGN--VIIGSEETIDHLMQG---------PLNPVEHRTISSRWRTLINERLKPVGKKAVLSGGLSADRAGLVAVLEDLDACLAKEQRIEGETFRKDKSGPFVCGAAFTAADVSAFPFLHRVREEYGFPAS--CARLEEWYTSASRRPSARKTVK 486
GKP WF++LNP+G+VPVL G + I SE + + G P + V + WR I+ R+ P+GK AV GG + D L+ +L+++D + GP++CG A T AD +AFPFL R+ +E+ C + +W + P+ KT++
Sbjct: 107 GGKPDWFMDLNPEGQVPVLTCFGGAKIFIDSEYILTRIADGVVEGGSKLMPDSDVNKEKMEE-WRHDISNRVIPIGKLAVQKGGKNVDE--LMELLKEMDVKI---------------KGPYLCGDAVTVADCAAFPFLWRINDEWPLTEENGCENIRKWLDKCTANPAFAKTIQ 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15102.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15102.3391.1 >prot_H-elongata_contig15102.3391.1 ID=prot_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp SGKPRWFIELNPKGEVPVLVVDGNVIIGSEETIDHLMQGPLNPVEHRTISback to top mRNA from alignment at H-elongata_contig15102:6623..7132- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15102.3391.1 ID=mRNA_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig15102:6623..7132- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15102:6623..7132- >mRNA_H-elongata_contig15102.3391.1 ID=mRNA_H-elongata_contig15102.3391.1|Name=mRNA_H-elongata_contig15102.3391.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig15102:6623..7132- (Himanthalia elongata Himel1 dioecious)back to top |