mRNA_H-elongata_contig15077.3381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15077.3381.1
Unique NamemRNA_H-elongata_contig15077.3381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A6H5L9W6_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9W6_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 5.620e-82
Identity = 121/196 (61.73%), Postives = 150/196 (76.53%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRW---TNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSE 579
            N W    ++  W+ATM  YF+TMHA+  R++ LL+V +G+DP++F  C SE   ALRL+HYS+EVSDP KGV G G HSD+G+LTLLATDEVPGLQV +  EW+DV P+ GAFICN+GDM QRW   TND L+STVHRVVNKLGRERYSI FF   NFDT+V CLPQ CSE++PAKYP  T G ++L K+S+ H +
Sbjct:  116 NQWPSEDLVPGWRATMQRYFTTMHAVGVRLSGLLSVGLGLDPSFFESCTSEMAHALRLLHYSAEVSDPAKGVMGAGAHSDYGLLTLLATDEVPGLQVRLNGEWLDVPPREGAFICNLGDMLQRWRVVTNDELRSTVHRVVNKLGRERYSIPFFFELNFDTEVVCLPQCCSEENPAKYPPVTAGSYILNKYSQTHQD 311          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: D7FYW9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW9_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 5.800e-82
Identity = 117/193 (60.62%), Postives = 147/193 (76.17%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSE 579
            N W    ++  WK TM E+F  MHA+  R+  LL+V +G+DPA FG CFSE    LRL+HYS+EVSDP KGV G G H+D+G++TLLATDEVPGLQV +  +W+D+ P+ GAFICN+GDM QRWTND L+STVHRVVNKLG ERYSI FF  PNFDT+VAC PQFCSE++PA+YP    G +L+ K+S+ H +
Sbjct:  118 NQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFGTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLNGKWLDIPPRKGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQD 310          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A7J7QM00_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QM00_9CHLO)

HSP 1 Score: 215 bits (547), Expect = 2.170e-63
Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSEQGIIKE 597
            N W   +++  ++ T+T YF  + AL  R+  LLA+S+G+ P YF   F+  + ALR +HY++EVS P +GVFG G HSD+GMLTLLATDEVPGLQV +   W +V P PGAFI N+GDM +RWTN   KST+HRV+N  G+ERYSI FF  PNF  KV CLP   SE  PA YP TT G HLL  +++ H+   + K+
Sbjct:  120 NQWPPEQLVPGFRLTVTAYFDALAALGMRLLRLLALSLGLPPDYFAPHFTHPMVALRPLHYTAEVSAPGQGVFGAGAHSDYGMLTLLATDEVPGLQVHLNGSWQEVAPLPGAFIVNLGDMLERWTNGLFKSTLHRVINTTGQERYSIPFFFEPNFTAKVECLPCCVSEARPAAYPPTTAGEHLLAMYAQTHAGYDVNKK 318          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A250WWS1_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WWS1_9CHLO)

HSP 1 Score: 207 bits (528), Expect = 3.050e-60
Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHS 576
            N W    +M   + T  +YF  + AL  R+  LLA+++ + P YF   F   +  LR +HYS  +SDP +G+FG G H+D+GMLT+LATDEVPGLQ+    +W  V+P+ GAFI N+GDM +RWTN   KST+HRV+N  G ERYSIA+F  P FD  V CLPQ C  D+P +YP TT G HLL+K++  H+
Sbjct:  147 NQWPEESLMPGLRDTYQQYFEELRALGMRLLRLLALALDLPPLYFHPYFEPPMIMLRPLHYSGVISDPGEGIFGAGAHTDYGMLTILATDEVPGLQIRQNGKWTHVSPRNGAFIINLGDMVERWTNGSFKSTLHRVINTTGSERYSIAYFFEPCFDAVVECLPQCCGGDNPPRYPPTTAGQHLLDKYAATHA 338          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A7S3QLD7_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QLD7_DUNTE)

HSP 1 Score: 204 bits (519), Expect = 6.990e-60
Identity = 97/200 (48.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLI-RDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSEQGIIKE 597
            N W    ++  ++A+M +Y   M+ L  R+  LLA+ +G+ P +F   F   +  LR +HY+ +VS P +GVFG G HSD+GMLTLL TD+VPGLQ+      W+DV PKP  FI N+GDM +RWTN   KST+HRVVN  G+ERYS+A F  PNFDT V CLPQ CS + P ++P TT G HLL+K++  H+    +K+
Sbjct:   73 NQWPNEHLVPGYRASMEQYMRAMNELGHRLLRLLALGLGLPPDHFDRFFDRPMIFLRPLHYAPKVSAPSEGVFGAGAHSDYGMLTLLKTDDVPGLQIHTDATGWMDVPPKPECFIINLGDMLERWTNGMYKSTLHRVVNTTGKERYSLACFFEPNFDTIVECLPQCCSPERPPQFPPTTSGQHLLDKYASTHAGYANLKQ 272          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: D8TU52_VOLCA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TU52_VOLCA)

HSP 1 Score: 205 bits (521), Expect = 1.150e-59
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRD---------EWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHS 576
            N W   +++ R++    +Y+  ++ L  R+  L+A+S+ + P YF   F   + ALR +HYS E SDP  GVFG G HSD+GMLT+LATD+VPGLQV              W DV P PG FI N+GDM +RWTN   +ST+HRV+N  GRERYSIAFF  PNFD +V  LP  C  D+P +YP TT G HLL+K++  H+
Sbjct:   96 NQWPDPQLLPRYREVTWQYYEALYGLGMRLLRLVALSLDLPPDYFAAAFDRPMVALRPLHYSGERSDPGAGVFGAGAHSDYGMLTILATDDVPGLQVGGAGGRGRAGGNRRWWDVEPIPGTFIINLGDMLERWTNGRYRSTLHRVINTTGRERYSIAFFFEPNFDAQVVALPCCCGPDNPPRYPPTTAGQHLLDKYAATHA 296          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A7S3VI83_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VI83_DUNTE)

HSP 1 Score: 204 bits (519), Expect = 2.480e-59
Identity = 97/200 (48.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLI-RDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSEQGIIKE 597
            N W    ++  ++A+M +Y   M+ L  R+  LLA+ +G+ P +F   F   +  LR +HY+ +VS P +GVFG G HSD+GMLTLL TD+VPGLQ+      W+DV PKP  FI N+GDM +RWTN   KST+HRVVN  G+ERYS+A F  PNFDT V CLPQ CS + P ++P TT G HLL+K++  H+    +K+
Sbjct:  116 NQWPNEHLVPGYRASMEQYMRAMNELGHRLLRLLALGLGLPPDHFDRFFDRPMIFLRPLHYAPKVSAPSEGVFGAGAHSDYGMLTLLKTDDVPGLQIHTDATGWMDVPPKPECFIINLGDMLERWTNGMYKSTLHRVVNTTGKERYSLACFFEPNFDTIVECLPQCCSPERPPQFPPTTSGQHLLDKYASTHAGYANLKQ 315          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A5J4Y7A5_9CHLO (Hyoscyamine 6-isoform 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7A5_9CHLO)

HSP 1 Score: 203 bits (516), Expect = 1.250e-58
Identity = 94/199 (47.24%), Postives = 135/199 (67.84%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSE-QGIIK 594
            N W    ++  +KA M  Y   +  LA R+  L+A+++ +   +F   F + +  LR +HY++++S P++G++G G H+D+G+LT+LATDE PGLQV    +W  V P PG FI N+GDM +RWTN + KS++HRVVN LG+ERYS AFF  PNF  KV CLPQ C +D PAK+P TTCG +LL+KF+  H++  G +K
Sbjct:  135 NQWPPEALLPGYKAAMNTYMDAVRNLADRLLPLIAMALRLPSNFFDLYFHKPIGTLRPLHYNAQMSLPDEGIYGAGAHTDWGVLTILATDENPGLQVFSGGKWAHVKPVPGTFIINLGDMLERWTNGYFKSSLHRVVNHLGKERYSTAFFYEPNFFAKVECLPQ-CCKDKPAKFPPTTCGQYLLDKFAATHADYSGAVK 332          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A0D2LKH6_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LKH6_9CHLO)

HSP 1 Score: 202 bits (514), Expect = 3.100e-58
Identity = 97/195 (49.74%), Postives = 128/195 (65.64%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSEQG 585
            N W   +++  ++AT   YFS++ AL  R+  LLA+S+ ++P +F   F   +  LR +HYS+EVS P  GVFG G HSD+GMLT+LATD  PGLQV +   W+DV   P  F+CN+GDM +RWTN   KST+HRVV+  GR+RYSI FF  PNF+  V  LP   + D PA YP TT G HLLEK++  H+  G
Sbjct:  130 NLWPPEKLLPGFRATTEAYFSSVTALGHRLLRLLAISLDLEPGHFDPFFDPPMVFLRPLHYSAEVSRPGDGVFGAGAHSDYGMLTVLATDGQPGLQVHVGGAWVDVPAAPRCFVCNLGDMLERWTNGLYKSTLHRVVSTTGRDRYSIPFFFEPNFNAVVEALPCCVTADRPAAYPPTTAGRHLLEKYAATHAGYG 324          
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Match: A0A7S0S1L0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S1L0_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 7.530e-58
Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = 1
Query:    1 NAWVLRRVMYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRLIHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNPKPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTKVACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHS 576
            N W    ++  ++AT   Y + M AL  R+  +LA+S+G+ PA+F   F+  +  LR +HY +  SDP+ GVFG G H+D+G+LT LATDEVPGLQ+     W DV P+PG  I N+GDM +RWTN   +ST+HRVV + G+ERYS+A F  PNF  +V CLP  C  D P +YP TT G H+L+K++  H+
Sbjct:  133 NQWPREELVPGYRATAEAYLAAMMALGARMLRVLALSLGLPPAHFERHFTSPMVFLRPLHYDATRSDPDAGVFGAGAHTDYGLLTFLATDEVPGLQIHAGGAWRDVAPRPGCLIVNLGDMLERWTNGRYRSTLHRVVTRGGQERYSVACFYEPNFTARVECLPCCCGPDAPPRYPPTTAGQHILDKYASTHA 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15077.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W6_9PHAE5.620e-8261.73Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7FYW9_ECTSI5.800e-8260.62Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7J7QM00_9CHLO2.170e-6352.26Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A250WWS1_9CHLO3.050e-6049.48Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S3QLD7_DUNTE6.990e-6048.50Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]
D8TU52_VOLCA1.150e-5948.26Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S3VI83_DUNTE2.480e-5948.50Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A5J4Y7A5_9CHLO1.250e-5847.24Hyoscyamine 6-isoform 1 n=1 Tax=Trebouxia sp. A1-2... [more]
A0A0D2LKH6_9CHLO3.100e-5849.74Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S0S1L0_9CHLO7.530e-5847.40Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15077contigH-elongata_contig15077:2482..5664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D7FYW8
KEGG koko:K06901
KEGG TC2.A.1.40
GOsGO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0010015,GO:0010101,GO:0010102,GO:0010468,GO:0019222,GO:0022622,GO:0032501,GO:0032502,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGsCOG3491@1,KOG0143@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size1184
Cds size576
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.1313298-UTR-H-elongata_contig15077:2481..25051622929892.1313298-UTR-H-elongata_contig15077:2481..2505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15077 2482..2505 +
1691679197.6324997-UTR-H-elongata_contig15077:2481..25051691679197.6324997-UTR-H-elongata_contig15077:2481..2505Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15077 2482..2505 +
1622929892.215398-UTR-H-elongata_contig15077:5080..56641622929892.215398-UTR-H-elongata_contig15077:5080..5664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15077 5081..5664 +
1691679197.717639-UTR-H-elongata_contig15077:5080..56641691679197.717639-UTR-H-elongata_contig15077:5080..5664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15077 5081..5664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.1429043-CDS-H-elongata_contig15077:2505..26731622929892.1429043-CDS-H-elongata_contig15077:2505..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 2506..2673 +
1691679197.6533997-CDS-H-elongata_contig15077:2505..26731691679197.6533997-CDS-H-elongata_contig15077:2505..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 2506..2673 +
1622929892.152675-CDS-H-elongata_contig15077:3351..34261622929892.152675-CDS-H-elongata_contig15077:3351..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 3352..3426 +
1691679197.6716063-CDS-H-elongata_contig15077:3351..34261691679197.6716063-CDS-H-elongata_contig15077:3351..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 3352..3426 +
1622929892.167868-CDS-H-elongata_contig15077:4066..41701622929892.167868-CDS-H-elongata_contig15077:4066..4170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4067..4170 +
1691679197.6820781-CDS-H-elongata_contig15077:4066..41701691679197.6820781-CDS-H-elongata_contig15077:4066..4170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4067..4170 +
1622929892.187053-CDS-H-elongata_contig15077:4429..45321622929892.187053-CDS-H-elongata_contig15077:4429..4532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4430..4532 +
1691679197.6973236-CDS-H-elongata_contig15077:4429..45321691679197.6973236-CDS-H-elongata_contig15077:4429..4532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4430..4532 +
1622929892.1980212-CDS-H-elongata_contig15077:4954..50801622929892.1980212-CDS-H-elongata_contig15077:4954..5080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4955..5080 +
1691679197.709402-CDS-H-elongata_contig15077:4954..50801691679197.709402-CDS-H-elongata_contig15077:4954..5080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15077 4955..5080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15077.3381.1prot_H-elongata_contig15077.3381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15077 2506..5080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15077.3381.1

>prot_H-elongata_contig15077.3381.1 ID=prot_H-elongata_contig15077.3381.1|Name=mRNA_H-elongata_contig15077.3381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MYRWKATMTEYFSTMHALAGRVTDLLAVSIGVDPAYFGGCFSESLSALRL
IHYSSEVSDPEKGVFGTGQHSDFGMLTLLATDEVPGLQVLIRDEWIDVNP
KPGAFICNVGDMFQRWTNDHLKSTVHRVVNKLGRERYSIAFFVAPNFDTK
VACLPQFCSEDDPAKYPRTTCGMHLLEKFSRLHSEQGIIKE*
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mRNA from alignment at H-elongata_contig15077:2482..5664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15077.3381.1 ID=mRNA_H-elongata_contig15077.3381.1|Name=mRNA_H-elongata_contig15077.3381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3183bp|location=Sequence derived from alignment at H-elongata_contig15077:2482..5664+ (Himanthalia elongata Himel1 dioecious)
AATGCTTGGGTTTTGCGCCGTGTGATGTACAGGTGGAAGGCGACGATGAC AGAATACTTCAGTACGATGCACGCTCTAGCTGGGCGCGTCACGGATCTAC TGGCAGTAAGCATCGGCGTAGATCCAGCGTACTTCGGGGGGTGTTTTTCG GAGTCCTTGTCTGCCCTGAGGCTCATCCACTACTCTTCCGAGGTATGGCG ACGAGTGGCTACTCACCAATGACTGAGATTCGGTCTAGATAGCAGAGCTA TGATGTGACTTGCGTGGTAATAGGGATTGATCGTGACTGCATCGCGGTGG GGTACATTATTAGTTAAATTGGTCTTGGTTCATAGGCTTCTCTCCTCTCC AGCGTGATAAGAGCCTGAAGACAGTAGTCTCAAATCACTCTTCCATCCCA TCACAGCAATGTACAAGAACCTCATATCTAATGGATGTTTGAGACCTTGA CCTTCTTCATGCCTTCTTTCCAATTATTATCTATGGTTGACATCAACGAC GACCTGGTTTATCTTTCTAATTGCCCACGGTGAACGGTTTCCTCCTTGAT TCCGGTCGCGGAAAAACCTAGCTGAAGAAAGAATAGACTGCAGCAAGCGT TTCTAAGCGCCGCGTACGAGGGAATAAAAGTTTTGCCGTGGACGTTACTC TCCTCTAAGTTAATGTAGCGGCAGGTTTGCGATTATCAGCAGGTAGATAC GTATGTATGTGGGAGGTAATCAACCACCTACACTAGTCAAAGCGATGTCC GAATAAGGGATGTCCGAATCGTGTTTTTCTTCCGGTTCTGTTGATACAGG TTATGATTGCTTTACCTGCCATTTTTAAGGAACATAACCACCCGACAGTG TTTGGTCGCAAACCCTGCAGGTATCGGATCCCGAGAAGGGTGTCTTTGGC ACCGGGCAGCACTCAGACTTCGGAATGCTCACGCTGCTTGCAACGGTGAG AAGTCTGGCTAGACCTTCAAGCACAACACTGTGCTTTCTATCGTGGTTTC TCATCCGTGCATACAATATACTAGGCACACCGTAGCAGCACGTGATACTC CGAGACGTAGCGTATTTTCCTCCACTTACGGCACCCCGTAGGATTCCCTC GCGAACATTGGTGCCGCAGGGTAGAGCTTTGCCGGCTACAAAGCCTATCG CCATATAACATTTCCATGCGGAAATATTTGTAAGTTATGAGGGTTAATTA TTATTGCATCGGACTACGCTCGCCTCAGGACGGACCGCATGAGGGAAGTA GACAGTGACGGGATCAATGGGTGGCGTAGTCAGCGCCTGGTGGGATTACT TATTCGATAGACTAGATCTAGTTCTAGAGACGTTTTTTTAAAAGGGTTGT GTTTTGGCTTCGGATTCGGTGCGCCTGCGATCCTCCTGTCTATCATATAC TTCACTTACCTACATATTACATGTCGTGGGCATTCTCAGTTTTTGGGTGT GATATATTCCATGTGGCTAGCTTGATACCTTTATGACGTGTCGGGCGTCG AGAAAACAGCAAAAATCCTACATGAGCTCAGATAGACAGCGTTGTTCCCA CATAAAATTTTCGAGTTTCGCCCCCTCGCGTGCAGGATGAAGTGCCTGGA CTGCAGGTTCTTATTCGTGACGAATGGATTGACGTGAATCCGAAACCGGG TGCCTTCATTTGCAACGTTGGTGACATGTTTCAGAGGTGGTGAGATATCC AGAATAAGTATTTCAAAGACCACCGCGTTTAATGGGCAAGAAACGTGTTA CAGTGCCGTTTCCAGTTTTACAGATTCAACCGAGGAATAACATCATTAAC CTTAATGAACAAACTAAAGAGCCAGTCGCACTCGCCCAGCTGTTAAAAGG TACAGAAAATACCCCGCATGGTCGCCGAAAGTACGCTTCGCGGTCTGACA TCATATCCACCCGCCGGGCTGTTTATTTTCCTTCGCGTTCTTTGGTAGGA CGAATGACCACCTGAAGTCCACCGTGCACCGAGTGGTGAATAAGCTGGGG CGCGAGCGCTACAGTATTGCGTTCTTCGTCGCACCGAACTTCGACACCAA GGTTAGTTTTTAAAGCAGCACATTAGACGAGTATATATAGTGATTTTTTT CGTGTCTCGACATATTAGATCATCCCATACTCTGGGGAGTAGGAGGCGTT AACGGCGACCCGGCGCCCACGCGGAAGAATCGTGCGGTGACAATTAGTGC AGAAACTCGAGATGTACGGCGAACTCATGACCCGCCAGGCCATGACGTCG GCAGGAATGATTGCGATCCTTGGAGACATTCGCAGCTGTATGTTGTATTT TTTTTGCTGCGGCTGGCGGTGATATACAAGCATAGCACCTACTTATGGCC TAGGGGCTATCGAAGAATGTAACAGACCAGTTATATATATATAGCCGTTG TCTTTCGAGCTCCTGAGGCCCTCATCAGCTGGTTTACACACCGTTGTTCC TCGGATATTTCCACGACCGCTAGGTGGCATGTTTGCCGCAGTTCTGCTCG GAAGACGACCCAGCCAAGTACCCACGAACGACCTGCGGAATGCACCTTCT GGAGAAGTTCTCGAGGCTTCACTCGGAGCAGGGGATCATCAAGGAGTAAA TCATATCGGCAAGGAGGCTTGGTTTGACCAGAAATTGAGTTAAGGCTGGA CTGGAGCTCAGTAGTACTGAATGCATTTCGTTTGTCTTATTATCATGGTC AGCGTAGCTACAGCGGTAAAAGCTTCGGGTCATAAACGTCTCAGGTTCAG TCACTATCAATGGTCTGCTTCGAATAAACACCCATATCCGTGTGATAAGA GCAATTCTAAGTTGCCCCGATCAACTGACCTAAGTATGTGTATCATTTCA TCAGGCAAAGTAGTGGAACCCATGTGAACAAAATTAGTCTGGTCAAATCG TCTCGCGCATCAGAAATGTAAACTGGTAAATCCCCATGGATCATGTAGCT CCTCAGGTTCGATAAGTAAAAATGGGTATCTTGTAAATTGTAAATCCTCC TCGCCGTAAGTGATGGGTCTACTTCTTCAACTACTTTTTGTTGCTGCGCG TGACCTCAGCGATTGCCCCCCAAACCGTACAAACTCAATCATAGGTAGCG TACCCCACTTTTATGTACGTCCAGCTTTGTTTATAGTATTGGAGTCCGTA GGTGTTTCCGCGTCTCTCTCTAAGTAAATGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig15077:2482..5664+

>mRNA_H-elongata_contig15077.3381.1 ID=mRNA_H-elongata_contig15077.3381.1|Name=mRNA_H-elongata_contig15077.3381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig15077:2482..5664+ (Himanthalia elongata Himel1 dioecious)
ATGTACAGGTGGAAGGCGACGATGACAGAATACTTCAGTACGATGCACGC
TCTAGCTGGGCGCGTCACGGATCTACTGGCAGTAAGCATCGGCGTAGATC
CAGCGTACTTCGGGGGGTGTTTTTCGGAGTCCTTGTCTGCCCTGAGGCTC
ATCCACTACTCTTCCGAGATGTACAGGTGGAAGGCGACGATGACAGAATA
CTTCAGTACGATGCACGCTCTAGCTGGGCGCGTCACGGATCTACTGGCAG
TAAGCATCGGCGTAGATCCAGCGTACTTCGGGGGGTGTTTTTCGGAGTCC
TTGTCTGCCCTGAGGCTCATCCACTACTCTTCCGAGGTATCGGATCCCGA
GAAGGGTGTCTTTGGCACCGGGCAGCACTCAGACTTCGGAATGCTCACGC
TGCTTGCAACGGTATCGGATCCCGAGAAGGGTGTCTTTGGCACCGGGCAG
CACTCAGACTTCGGAATGCTCACGCTGCTTGCAACGGATGAAGTGCCTGG
ACTGCAGGTTCTTATTCGTGACGAATGGATTGACGTGAATCCGAAACCGG
GTGCCTTCATTTGCAACGTTGGTGACATGTTTCAGAGGTGGATGAAGTGC
CTGGACTGCAGGTTCTTATTCGTGACGAATGGATTGACGTGAATCCGAAA
CCGGGTGCCTTCATTTGCAACGTTGGTGACATGTTTCAGAGGTGGACGAA
TGACCACCTGAAGTCCACCGTGCACCGAGTGGTGAATAAGCTGGGGCGCG
AGCGCTACAGTATTGCGTTCTTCGTCGCACCGAACTTCGACACCAAGGAC
GAATGACCACCTGAAGTCCACCGTGCACCGAGTGGTGAATAAGCTGGGGC
GCGAGCGCTACAGTATTGCGTTCTTCGTCGCACCGAACTTCGACACCAAG
GTGGCATGTTTGCCGCAGTTCTGCTCGGAAGACGACCCAGCCAAGTACCC
ACGAACGACCTGCGGAATGCACCTTCTGGAGAAGTTCTCGAGGCTTCACT
CGGAGCAGGGGATCATCAAGGAGTAAGTGGCATGTTTGCCGCAGTTCTGC
TCGGAAGACGACCCAGCCAAGTACCCACGAACGACCTGCGGAATGCACCT
TCTGGAGAAGTTCTCGAGGCTTCACTCGGAGCAGGGGATCATCAAGGAGT
AA
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