mRNA_H-elongata_contig150420.3366.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: D7G0B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B1_ECTSI) HSP 1 Score: 132 bits (333), Expect = 6.420e-35 Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1
Query: 19 EVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
EVPTVLVVGATGEMGRVVVRKLLLRGF+VRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV+
Sbjct: 79 EVPTVLVVGATGEMGRVVVRKLLLRGFSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVI 150
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A835ZGW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW1_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.000e-29 Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 13 PPEVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
P EVP VLVVGATGE GRVVVRKLLLRGF VRVLVRNLYSSTLDLLGTG T+ QGDL N SIVDAVSGVDKVM
Sbjct: 450 PEEVPEVLVVGATGETGRVVVRKLLLRGFKVRVLVRNLYSSTLDLLGTGVTYTQGDLGNAASIVDAVSGVDKVM 523
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S2ZMD3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMD3_9RHOD) HSP 1 Score: 98.2 bits (243), Expect = 2.430e-22 Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
P VLVVGATGE+GRV+VRKLLLRG+ VRVLVRNL++ TLDLLGTG ++ GD+T+ ++++AVSGVDKV+
Sbjct: 84 PVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVV 153
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S3EC31_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC31_9RHOD) HSP 1 Score: 98.2 bits (243), Expect = 3.840e-22 Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
P VLVVGATGE+GRV+VRKLLLRG+ VRVLVRNL++ TLDLLGTG ++ GD+T+ ++++AVSGVDKV+
Sbjct: 84 PVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVV 153
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A2V3J7E6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E6_9FLOR) HSP 1 Score: 97.1 bits (240), Expect = 8.270e-22 Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
P VLVVGATGE GR++VRKL+LRG+ VRVLVRNLYSSTLDLLGTG +F +G L +Y S+++A VDKV+ A+
Sbjct: 58 PEVLVVGATGETGRIIVRKLVLRGYNVRVLVRNLYSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVICAV 130
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A1X6PIK3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIK3_PORUM) HSP 1 Score: 95.5 bits (236), Expect = 3.680e-21 Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
P VLVVGATGE GR++VRKL+LRGF VRVLVR+L++ TLD LGTG +F +GDL + +++DAVSGVDK++ A+
Sbjct: 125 PEVLVVGATGETGRIIVRKLVLRGFRVRVLVRDLFTKTLDTLGTGVSFVKGDLRDADTLLDAVSGVDKIVCAI 197
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: R7Q993_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q993_CHOCR) HSP 1 Score: 92.4 bits (228), Expect = 3.090e-20 Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
P VLV GATGE GRV+VRKL+LRG+ VRVLVR+L+SSTLDLLGTG +F +G L +Y S+++A VDKV+ A+
Sbjct: 10 PEVLVAGATGETGRVIVRKLVLRGYNVRVLVRDLFSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVVCAV 82
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: M2VV10_GALSU (Transcription repressor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VV10_GALSU) HSP 1 Score: 89.4 bits (220), Expect = 5.290e-19 Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 31 VLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
VLV+GATG++G ++ +KLLLRG+ VRVLVRNLYSSTLD +GTG TFA+GD+ S+ DA+ +DKV+ A+
Sbjct: 118 VLVLGATGKIGNIITKKLLLRGYRVRVLVRNLYSSTLDAVGTGCTFAKGDVRELSSLYDAMENIDKVIWAV 188
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S1XIJ7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIJ7_9RHOD) HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19 Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 19 EVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTN-YRSIVDAVSGVDKVMGAL 243
E P VLVVGATGE GRVVVRKLLLRGF VRVLVR+LYS+TLD L T +F +GD+T+ + DAV+GVDK++ L
Sbjct: 99 EPPMVLVVGATGETGRVVVRKLLLRGFQVRVLVRDLYSTTLDKLPTACSFVKGDVTDSVFELQDAVAGVDKIVWVL 174
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A4D9D9K4_9STRA (NmrA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9K4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.390e-19 Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
PTVLVVGATG++GR VVRKL+L+G+ V+VLVRNLYS+TL+LLGTG ++ +GDL++ S+ A G DKV+
Sbjct: 145 PTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLSDLSSLRTACDGADKVV 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig150420.3366.1 >prot_H-elongata_contig150420.3366.1 ID=prot_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MCRIPPEVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLback to top mRNA from alignment at H-elongata_contig150420:371..1262+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig150420.3366.1 ID=mRNA_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=892bp|location=Sequence derived from alignment at H-elongata_contig150420:371..1262+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig150420:371..1262+ >mRNA_H-elongata_contig150420.3366.1 ID=mRNA_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig150420:371..1262+ (Himanthalia elongata Himel1 dioecious)back to top |