mRNA_H-elongata_contig150420.3366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150420.3366.1
Unique NamemRNA_H-elongata_contig150420.3366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: D7G0B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 6.420e-35
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1
Query:   19 EVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
            EVPTVLVVGATGEMGRVVVRKLLLRGF+VRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV+
Sbjct:   79 EVPTVLVVGATGEMGRVVVRKLLLRGFSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVI 150          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A835ZGW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.000e-29
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   13 PPEVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
            P EVP VLVVGATGE GRVVVRKLLLRGF VRVLVRNLYSSTLDLLGTG T+ QGDL N  SIVDAVSGVDKVM
Sbjct:  450 PEEVPEVLVVGATGETGRVVVRKLLLRGFKVRVLVRNLYSSTLDLLGTGVTYTQGDLGNAASIVDAVSGVDKVM 523          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S2ZMD3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMD3_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 2.430e-22
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
            P VLVVGATGE+GRV+VRKLLLRG+ VRVLVRNL++ TLDLLGTG ++  GD+T+  ++++AVSGVDKV+
Sbjct:   84 PVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVV 153          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S3EC31_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC31_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 3.840e-22
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
            P VLVVGATGE+GRV+VRKLLLRG+ VRVLVRNL++ TLDLLGTG ++  GD+T+  ++++AVSGVDKV+
Sbjct:   84 PVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVV 153          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A2V3J7E6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E6_9FLOR)

HSP 1 Score: 97.1 bits (240), Expect = 8.270e-22
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
            P VLVVGATGE GR++VRKL+LRG+ VRVLVRNLYSSTLDLLGTG +F +G L +Y S+++A   VDKV+ A+
Sbjct:   58 PEVLVVGATGETGRIIVRKLVLRGYNVRVLVRNLYSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVICAV 130          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A1X6PIK3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIK3_PORUM)

HSP 1 Score: 95.5 bits (236), Expect = 3.680e-21
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
            P VLVVGATGE GR++VRKL+LRGF VRVLVR+L++ TLD LGTG +F +GDL +  +++DAVSGVDK++ A+
Sbjct:  125 PEVLVVGATGETGRIIVRKLVLRGFRVRVLVRDLFTKTLDTLGTGVSFVKGDLRDADTLLDAVSGVDKIVCAI 197          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: R7Q993_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q993_CHOCR)

HSP 1 Score: 92.4 bits (228), Expect = 3.090e-20
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
            P VLV GATGE GRV+VRKL+LRG+ VRVLVR+L+SSTLDLLGTG +F +G L +Y S+++A   VDKV+ A+
Sbjct:   10 PEVLVAGATGETGRVIVRKLVLRGYNVRVLVRDLFSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVVCAV 82          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: M2VV10_GALSU (Transcription repressor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VV10_GALSU)

HSP 1 Score: 89.4 bits (220), Expect = 5.290e-19
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   31 VLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVMGAL 243
            VLV+GATG++G ++ +KLLLRG+ VRVLVRNLYSSTLD +GTG TFA+GD+    S+ DA+  +DKV+ A+
Sbjct:  118 VLVLGATGKIGNIITKKLLLRGYRVRVLVRNLYSSTLDAVGTGCTFAKGDVRELSSLYDAMENIDKVIWAV 188          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A7S1XIJ7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIJ7_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   19 EVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTN-YRSIVDAVSGVDKVMGAL 243
            E P VLVVGATGE GRVVVRKLLLRGF VRVLVR+LYS+TLD L T  +F +GD+T+    + DAV+GVDK++  L
Sbjct:   99 EPPMVLVVGATGETGRVVVRKLLLRGFQVRVLVRDLYSTTLDKLPTACSFVKGDVTDSVFELQDAVAGVDKIVWVL 174          
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Match: A0A4D9D9K4_9STRA (NmrA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9K4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.390e-19
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   25 PTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVM 234
            PTVLVVGATG++GR VVRKL+L+G+ V+VLVRNLYS+TL+LLGTG ++ +GDL++  S+  A  G DKV+
Sbjct:  145 PTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLSDLSSLRTACDGADKVV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150420.3366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0B1_ECTSI6.420e-3597.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGW1_9STRA3.000e-2986.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2ZMD3_9RHOD2.430e-2268.57Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EC31_9RHOD3.840e-2268.57Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2V3J7E6_9FLOR8.270e-2267.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6PIK3_PORUM3.680e-2164.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7Q993_CHOCR3.090e-2064.38Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2VV10_GALSU5.290e-1960.56Transcription repressor n=1 Tax=Galdieria sulphura... [more]
A0A7S1XIJ7_9RHOD7.260e-1965.79Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A4D9D9K4_9STRA7.390e-1962.86NmrA domain-containing protein n=2 Tax=Monodopsida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150420contigH-elongata_contig150420:371..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog2880.D7G0B1
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
EC2.3.1.48
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-02_001140.1
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.6915755-CDS-H-elongata_contig150420:370..4641622929890.6915755-CDS-H-elongata_contig150420:370..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150420 371..464 +
1691679196.9799469-CDS-H-elongata_contig150420:370..4641691679196.9799469-CDS-H-elongata_contig150420:370..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150420 371..464 +
1622929890.7088087-CDS-H-elongata_contig150420:1113..12621622929890.7088087-CDS-H-elongata_contig150420:1113..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150420 1114..1262 +
1691679196.9930894-CDS-H-elongata_contig150420:1113..12621691679196.9930894-CDS-H-elongata_contig150420:1113..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150420 1114..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150420.3366.1prot_H-elongata_contig150420.3366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150420 371..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150420.3366.1

>prot_H-elongata_contig150420.3366.1 ID=prot_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MCRIPPEVPTVLVVGATGEMGRVVVRKLLLRGFAVRVLVRNLYSSTLDLL
GTGATFAQGDLTNYRSIVDAVSGVDKVMGAL
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mRNA from alignment at H-elongata_contig150420:371..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150420.3366.1 ID=mRNA_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=892bp|location=Sequence derived from alignment at H-elongata_contig150420:371..1262+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCGTATCCCTCCGGAGGTTCCTACGGTTCTGGTTGTGGGGGCTAC TGGCGAGATGGGGAGGGTCGTGGTGCGAAAGCTTCTGCTTAGAGGTGGGG TGATGCGGTAGGCCTTTTCGACCGGATGGGCCTGTTTTTTGTTTTTATCC TTTTTAGTAATATTGTCTGTGTGTGTGTGTGTGTATATATATGTGTGTAT TTATTAAATTGTATATAACCGCGCAGTCCGGCTCTTTCATGCTAGTCCTC TTCTAGGCTACTCTAGCATTGATCCTCCCAATAAGGGATTCAATCATATT TGCTTCTAACACTTCTGATCAGACGTGTCAAAGGGTGTGTGCATTATGTG TGTGCATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGATGTTTGTAAGAGT GTTGTCCGTTTTATTGTGCTCGATGTGTTTGAGGATGTCCTTTTAAGGTT TTTGACGAAGGAGACGTGTTTTTTTCTTTTTCTTTTTTGCTTGTGTGTTC TGTGTGCCCGTTTTTTTTCTTTCTTGTGGGTTCTGTGTGCGCTTAGGTAG AGGAAGTCGTTATTGGTTGCGGTTCGGGGTTATTTGTTTGATCGATCGAT CGTTTGGCGCAAGAAACGGCCCTCAACAGCTCCTATTCTCCAACCTCTCG CTTCCCACCCCTCCTCTGCCCTCCGTTTCCTTTCCGTGCAAAGGCTTCGC CGTGCGAGTATTGGTACGGAACCTGTACTCGAGTACGCTGGACCTTTTGG GAACGGGCGCCACCTTTGCCCAGGGGGATCTGACGAACTACCGCAGCATC GTGGATGCCGTCTCCGGAGTTGATAAGGTAATGGGAGCACTG
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Coding sequence (CDS) from alignment at H-elongata_contig150420:371..1262+

>mRNA_H-elongata_contig150420.3366.1 ID=mRNA_H-elongata_contig150420.3366.1|Name=mRNA_H-elongata_contig150420.3366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig150420:371..1262+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCGTATCCCTCCGGAGGTTCCTACGGTTCTGGTTGTGGGGGCTAC
TGGCGAGATGGGGAGGGTCGTGGTGCGAAAGCTTCTGCTTAGAGATGTGT
CGTATCCCTCCGGAGGTTCCTACGGTTCTGGTTGTGGGGGCTACTGGCGA
GATGGGGAGGGTCGTGGTGCGAAAGCTTCTGCTTAGAGGCTTCGCCGTGC
GAGTATTGGTACGGAACCTGTACTCGAGTACGCTGGACCTTTTGGGAACG
GGCGCCACCTTTGCCCAGGGGGATCTGACGAACTACCGCAGCATCGTGGA
TGCCGTCTCCGGAGTTGATAAGGTAATGGGAGCACTGGCTTCGCCGTGCG
AGTATTGGTACGGAACCTGTACTCGAGTACGCTGGACCTTTTGGGAACGG
GCGCCACCTTTGCCCAGGGGGATCTGACGAACTACCGCAGCATCGTGGAT
GCCGTCTCCGGAGTTGATAAGGTAATGGGAGCACTG
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