mRNA_H-elongata_contig149932.3341.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A6H5L8G8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G8_9PHAE) HSP 1 Score: 173 bits (438), Expect = 9.130e-52 Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 1
Query: 1 HDCPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
HDCPR+W G S GSCWCGWD+YCMCTPSLAID+VVE+ DP T EVGSVLVVRRKDNGKLACIGGFVEVGETL EA RREV EETGL VTS +M+PR+ A D
Sbjct: 55 HDCPRQWHGASKTHAGSCWCGWDEYCMCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPRMYDDPARD 161
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A835YUT6_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT6_9STRA) HSP 1 Score: 124 bits (311), Expect = 5.750e-33 Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 7 CPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
CP +AG S RF GSCWCG D YCMCTPSLAID++VE+ D + + ++VVRRKD GK A +GGFV+VGET+ EAV REV EETGL V R++PR+ + D
Sbjct: 79 CPHWFAGGSPRFKGSCWCGKDDYCMCTPSLAIDTIVEMVDA-SGVIKGLVVVRRKDVGKYALVGGFVDVGETVEEAVHREVKEETGLAVWDLRLLPRIYSDPSRD 182
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: D7FNI6_ECTSI (MutT-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI6_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.290e-32 Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 79 MCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
MCTPSLAID+VVE+ DP T EVGSVLVVRRKDNGKLACIGGFVEVGETL EA RREV EETGL VTS +M+P++ A D
Sbjct: 1 MCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPQMYDDPARD 81
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2CUW8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUW8_9STRA) HSP 1 Score: 102 bits (253), Expect = 9.940e-25 Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 7 CPRRWAG--TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTS 279
CP W G SD VGSCWCG D YCMCTPSLAID V+E P+ + +V++V R DNG A +GGFV+VGET+ AV RE+ EETGL + S
Sbjct: 31 CPYVWNGGAPSDAPVGSCWCGQDNYCMCTPSLAIDLVIESTLPNGEP--AVVLVERADNGLFATMGGFVDVGETVETAVARELMEETGLELAS 121
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2DR83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR83_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.850e-22 Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 46 GSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVV 273
G+C C + YC+CTPSLAID +VE+ GS+++VRR DNGK A IGGFVEVGE + E V RE+WEETGL +
Sbjct: 30 GNCLCNTEDYCLCTPSLAIDVIVEVPS------GSIVLVRRADNGKYATIGGFVEVGEAVEETVARELWEETGLTL 99
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2PVW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVW7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.790e-20 Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 1 HDCPRRWAG---TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGS-------VLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVV 273
H R W G DR GSCWCG D+YCMCTPS+AID V+ + P TK S V VVRR D +LA IGGFV+ GET AV REV EETG+ +
Sbjct: 106 HGQERTWHGGHPAQDR-PGSCWCGQDEYCMCTPSVAIDIVLYQKRPSTKNNPSDDGADYDVWVVRRSDTNQLATIGGFVDTGETTENAVLREVEEETGITI 205
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A8J2S8F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8F7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.760e-18 Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 7 CPRRWAG--TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
CP W G S GSCW G D Y MCTPSLAID V+E D +V++VRR DNGK A +GGFV+VGE +AV RE+ EET L
Sbjct: 35 CPYVWHGGAPSGEPRGSCWVGNDGYAMCTPSLAIDLVIESGDD------AVVLVRRGDNGKYATMGGFVDVGEDPRDAVARELREETAL 117
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A1Z5JSC3_FISSO (Nudix hydrolase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSC3_FISSO) HSP 1 Score: 84.3 bits (207), Expect = 1.150e-17 Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 13 RRWAG--TSDRFVGSCWCG-WDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
R W G SD GSCWCG D YC+CTPSLAID VV V +VRRKD +LA +GGFV++GE++ EAV RE+ EETG+
Sbjct: 57 REWHGGHPSDAHAGSCWCGDTDGYCLCTPSLAIDLVVMTGRDH------VWLVRRKDTSQLATVGGFVQMGESVEEAVLRELAEETGI 138
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S4B2J2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2J2_CHRCT) HSP 1 Score: 81.3 bits (199), Expect = 1.230e-16 Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 43 VGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWR 285
GSC CG ++C+CTPS+A+D+++E+ D + K + V+RR G LA +GGF++VGE+ +RREV EETGL + S R
Sbjct: 42 AGSCLCGEGQFCLCTPSIAVDAIIEMCDSNDKVLRVAFVMRRDGRG-LAIVGGFLKVGESAEAGIRREVLEETGLTLRSLR 121
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: F0Y7B7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7B7_AURAN) HSP 1 Score: 83.6 bits (205), Expect = 1.640e-16 Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 7 CPRRWAGTSD--RFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
CP W G + GSCW G D Y MCTPSLAID V+E D V++VRR DNGK A +GGFV+VGE +AV RE+ EET L
Sbjct: 29 CPYVWHGGAPGGEPAGSCWAGPDGYAMCTPSLAIDLVIESGDD------GVVLVRRGDNGKYATMGGFVDVGELPRDAVARELREETNL 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149932.3341.1 >prot_H-elongata_contig149932.3341.1 ID=prot_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp HDCPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSback to top mRNA from alignment at H-elongata_contig149932:113..1455+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149932.3341.1 ID=mRNA_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1343bp|location=Sequence derived from alignment at H-elongata_contig149932:113..1455+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149932:113..1455+ >mRNA_H-elongata_contig149932.3341.1 ID=mRNA_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig149932:113..1455+ (Himanthalia elongata Himel1 dioecious)back to top |