mRNA_H-elongata_contig149932.3341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149932.3341.1
Unique NamemRNA_H-elongata_contig149932.3341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A6H5L8G8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 9.130e-52
Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    1 HDCPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
            HDCPR+W G S    GSCWCGWD+YCMCTPSLAID+VVE+ DP T EVGSVLVVRRKDNGKLACIGGFVEVGETL EA RREV EETGL VTS +M+PR+    A D
Sbjct:   55 HDCPRQWHGASKTHAGSCWCGWDEYCMCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPRMYDDPARD 161          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A835YUT6_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.750e-33
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    7 CPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
            CP  +AG S RF GSCWCG D YCMCTPSLAID++VE+ D  +  +  ++VVRRKD GK A +GGFV+VGET+ EAV REV EETGL V   R++PR+    + D
Sbjct:   79 CPHWFAGGSPRFKGSCWCGKDDYCMCTPSLAIDTIVEMVDA-SGVIKGLVVVRRKDVGKYALVGGFVDVGETVEEAVHREVKEETGLAVWDLRLLPRIYSDPSRD 182          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: D7FNI6_ECTSI (MutT-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI6_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.290e-32
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   79 MCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRVRRSVATD 321
            MCTPSLAID+VVE+ DP T EVGSVLVVRRKDNGKLACIGGFVEVGETL EA RREV EETGL VTS +M+P++    A D
Sbjct:    1 MCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPQMYDDPARD 81          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2CUW8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUW8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.940e-25
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    7 CPRRWAG--TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTS 279
            CP  W G   SD  VGSCWCG D YCMCTPSLAID V+E   P+ +   +V++V R DNG  A +GGFV+VGET+  AV RE+ EETGL + S
Sbjct:   31 CPYVWNGGAPSDAPVGSCWCGQDNYCMCTPSLAIDLVIESTLPNGEP--AVVLVERADNGLFATMGGFVDVGETVETAVARELMEETGLELAS 121          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2DR83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR83_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.850e-22
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   46 GSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVV 273
            G+C C  + YC+CTPSLAID +VE+        GS+++VRR DNGK A IGGFVEVGE + E V RE+WEETGL +
Sbjct:   30 GNCLCNTEDYCLCTPSLAIDVIVEVPS------GSIVLVRRADNGKYATIGGFVEVGEAVEETVARELWEETGLTL 99          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S2PVW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVW7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.790e-20
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 HDCPRRWAG---TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGS-------VLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVV 273
            H   R W G     DR  GSCWCG D+YCMCTPS+AID V+  + P TK   S       V VVRR D  +LA IGGFV+ GET   AV REV EETG+ +
Sbjct:  106 HGQERTWHGGHPAQDR-PGSCWCGQDEYCMCTPSVAIDIVLYQKRPSTKNNPSDDGADYDVWVVRRSDTNQLATIGGFVDTGETTENAVLREVEEETGITI 205          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A8J2S8F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8F7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.760e-18
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    7 CPRRWAG--TSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
            CP  W G   S    GSCW G D Y MCTPSLAID V+E  D       +V++VRR DNGK A +GGFV+VGE   +AV RE+ EET L
Sbjct:   35 CPYVWHGGAPSGEPRGSCWVGNDGYAMCTPSLAIDLVIESGDD------AVVLVRRGDNGKYATMGGFVDVGEDPRDAVARELREETAL 117          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A1Z5JSC3_FISSO (Nudix hydrolase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSC3_FISSO)

HSP 1 Score: 84.3 bits (207), Expect = 1.150e-17
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   13 RRWAG--TSDRFVGSCWCG-WDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
            R W G   SD   GSCWCG  D YC+CTPSLAID VV            V +VRRKD  +LA +GGFV++GE++ EAV RE+ EETG+
Sbjct:   57 REWHGGHPSDAHAGSCWCGDTDGYCLCTPSLAIDLVVMTGRDH------VWLVRRKDTSQLATVGGFVQMGESVEEAVLRELAEETGI 138          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: A0A7S4B2J2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2J2_CHRCT)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-16
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   43 VGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWR 285
             GSC CG  ++C+CTPS+A+D+++E+ D + K +    V+RR   G LA +GGF++VGE+    +RREV EETGL + S R
Sbjct:   42 AGSCLCGEGQFCLCTPSIAVDAIIEMCDSNDKVLRVAFVMRRDGRG-LAIVGGFLKVGESAEAGIRREVLEETGLTLRSLR 121          
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Match: F0Y7B7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7B7_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.640e-16
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    7 CPRRWAGTSD--RFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGSVLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGL 267
            CP  W G +      GSCW G D Y MCTPSLAID V+E  D        V++VRR DNGK A +GGFV+VGE   +AV RE+ EET L
Sbjct:   29 CPYVWHGGAPGGEPAGSCWAGPDGYAMCTPSLAIDLVIESGDD------GVVLVRRGDNGKYATMGGFVDVGELPRDAVARELREETNL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149932.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8G8_9PHAE9.130e-5275.70Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A835YUT6_9STRA5.750e-3358.10NUDIX hydrolase domain-like protein n=1 Tax=Tribon... [more]
D7FNI6_ECTSI1.290e-3276.54MutT-like protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S2CUW8_9STRA9.940e-2556.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DR83_9STRA1.850e-2257.89Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2PVW7_9STRA1.790e-2052.48Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8J2S8F7_9STRA9.760e-1853.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JSC3_FISSO1.150e-1753.41Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S4B2J2_CHRCT1.230e-1646.91Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
F0Y7B7_AURAN1.640e-1652.81Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149932contigH-elongata_contig149932:113..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.7e-25
Seed eggNOG ortholog2880.D7FNI6
KEGG koko:K03574
EggNOG free text desc.NUDIX domain
EggNOG OGs2S7PM@2759,COG1051@1
EC3.6.1.55
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-01_005300.1
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.4717035-CDS-H-elongata_contig149932:112..2531622929887.4717035-CDS-H-elongata_contig149932:112..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149932 113..253 +
1691679195.8679578-CDS-H-elongata_contig149932:112..2531691679195.8679578-CDS-H-elongata_contig149932:112..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149932 113..253 +
1622929887.486612-CDS-H-elongata_contig149932:1275..14551622929887.486612-CDS-H-elongata_contig149932:1275..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149932 1276..1455 +
1691679195.8790112-CDS-H-elongata_contig149932:1275..14551691679195.8790112-CDS-H-elongata_contig149932:1275..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149932 1276..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149932.3341.1prot_H-elongata_contig149932.3341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149932 113..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149932.3341.1

>prot_H-elongata_contig149932.3341.1 ID=prot_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
HDCPRRWAGTSDRFVGSCWCGWDKYCMCTPSLAIDSVVEIEDPDTKEVGS
VLVVRRKDNGKLACIGGFVEVGETLPEAVRREVWEETGLVVTSWRMIPRV
RRSVATD
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mRNA from alignment at H-elongata_contig149932:113..1455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149932.3341.1 ID=mRNA_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1343bp|location=Sequence derived from alignment at H-elongata_contig149932:113..1455+ (Himanthalia elongata Himel1 dioecious)
CACGACTGCCCAAGGCGCTGGGCCGGCACCTCGGACAGATTCGTCGGGTC CTGCTGGTGTGGCTGGGACAAGTACTGCATGTGCACGCCCAGCTTGGCGA TCGATTCCGTTGTGGAGATCGAGGACCCCGACACCAAGGAGGTGCCGTAA CGCCTCGTCGAGATTTGGTGCGCGTGTACAGTGTTGCTGTGGTGGTACAG TAGTACAAGAAGAAAAAAAAAGAAGAAAAAAACACGTACACTTCGCTTTG TTTTATTTGTACCAGCCGTACTTGATGGCACATTATAATCAAGCCCATCG GGTGTTGGGGATTTTGGGGGATGCGAGAAGCGGCGAGGAGTTGGAGGAGA GCGGATCTGCTGCGTGTTGCTTCTTTTTCTTTTCTTTATAAGAACTTTTA AGTACGTAAGTAAGTAGCTCGAAGTAATTTAGCAAGAACGGCGGCAGAAC TAACTGTTTCACGTAATTTGATGCCGATAGTTTTTCGAGACGAAGGCCTT GGGCTCGTGTCGAGAAACGCCGATCGAGAGTTGTGTGATTTGATGACGAT AACTCTCCCTTTACTATTTTACCATTTAAAGCTGGCGAATCAAATCGGTG GTGCTACCATAACAAAGCGCAGCAGCAGCAGTAGGCTGTTCTTCGTGAAT GCCCTCCCTCGTGTTGCCGAGGTGCGTTTTCAGTCTCGACCTTTTGGAAG ACGTTCAAGGCATGGACTCTTCGTCTTTTCTCTCTCTCCTTGAGCAGAAA AGAAGCGTTACAAGGCGTTGTCGGGGTTTGGCGGCCCCTCCCAAGCGATA CCCTGGTTGATGTACAAAGCGATAGATTGTTAGTGGCGGGAGTCTTAGAA TATTTACTGCACTTTAGTCGAGCAGTTACGTATCACAGCTATATAGTTTA TTTTATAATACATGTTTAGGCTCTTTCAAGAGGTAGAGGTATAATATACT TCGGTACCTTGTACCTTTTTGGAGTGGTCGGAAACGCGCTCCGGGTACCA TACTTCCACGAGGAGGCGTTACGCTTGCCCCCCCCCCCGCGAGGAAGAAA CGGGTGACGATGTCGCCTCATGATTCGACTGGATGCGATTCTTCTCTCCT TTTACTTCTAAAGTTGACGGGGGGTCGATCGATGGGTGGGTCGGTCGGTC GTTTCTGTGCCAGGTGGGATCAGTGCTCGTAGTGAGGAGAAAAGACAACG GAAAGTTAGCGTGCATCGGCGGCTTCGTGGAGGTGGGAGAGACACTGCCG GAGGCGGTGAGGCGGGAAGTGTGGGAGGAGACAGGCCTCGTGGTCACCTC CTGGCGAATGATTCCTCGGGTGAGACGCAGCGTCGCCACCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig149932:113..1455+

>mRNA_H-elongata_contig149932.3341.1 ID=mRNA_H-elongata_contig149932.3341.1|Name=mRNA_H-elongata_contig149932.3341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig149932:113..1455+ (Himanthalia elongata Himel1 dioecious)
CACGACTGCCCAAGGCGCTGGGCCGGCACCTCGGACAGATTCGTCGGGTC
CTGCTGGTGTGGCTGGGACAAGTACTGCATGTGCACGCCCAGCTTGGCGA
TCGATTCCGTTGTGGAGATCGAGGACCCCGACACCAAGGAGCACGACTGC
CCAAGGCGCTGGGCCGGCACCTCGGACAGATTCGTCGGGTCCTGCTGGTG
TGGCTGGGACAAGTACTGCATGTGCACGCCCAGCTTGGCGATCGATTCCG
TTGTGGAGATCGAGGACCCCGACACCAAGGAGGTGGGATCAGTGCTCGTA
GTGAGGAGAAAAGACAACGGAAAGTTAGCGTGCATCGGCGGCTTCGTGGA
GGTGGGAGAGACACTGCCGGAGGCGGTGAGGCGGGAAGTGTGGGAGGAGA
CAGGCCTCGTGGTCACCTCCTGGCGAATGATTCCTCGGGTGAGACGCAGC
GTCGCCACCGATGTGGGATCAGTGCTCGTAGTGAGGAGAAAAGACAACGG
AAAGTTAGCGTGCATCGGCGGCTTCGTGGAGGTGGGAGAGACACTGCCGG
AGGCGGTGAGGCGGGAAGTGTGGGAGGAGACAGGCCTCGTGGTCACCTCC
TGGCGAATGATTCCTCGGGTGAGACGCAGCGTCGCCACCGAT
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