mRNA_H-elongata_contig149482.3310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149482.3310.1
Unique NamemRNA_H-elongata_contig149482.3310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A5J5C4J0_9ASTE (Integrase catalytic domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C4J0_9ASTE)

HSP 1 Score: 59.3 bits (142), Expect = 1.150e-8
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVY--LRRSKPGHKLAPRGASCIMLG 210
            W  A + A  M NR    ++D G SPYE+ YG+ PT++N  PFG +V+  LR   P H LAPR  SC  LG
Sbjct:   38 WVNAFSTATFMINRLPTLTLD-GLSPYEILYGKPPTYSNFHPFGCLVFPNLRNYAP-HNLAPRSRSCAFLG 106          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A251UMR8_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UMR8_HELAN)

HSP 1 Score: 57.4 bits (137), Expect = 6.090e-8
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 LWAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVY-LRRSKPGHKLAPRGASCIMLG 210
            LW++A A A  + NR   SS+ +  SPYE+ YGR PT++N+  FG  V+   R    HKLAPR A CI +G
Sbjct:   37 LWSDAFASATFIINRLP-SSVLNFKSPYEVLYGRCPTYSNLRIFGCRVFPYLRDYAKHKLAPRSAECIFIG 106          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI)

HSP 1 Score: 54.3 bits (129), Expect = 7.730e-7
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH-KLAPRGASCIMLG 210
            WA+A+A AC + NRC  SS+  G +PYE W G  P   ++  FG  V++  + P   K APR    +++G
Sbjct:  632 WADAVATACHIRNRCPSSSL-GGITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIG 700          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00115E8C8E (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00115E8C8E)

HSP 1 Score: 51.6 bits (122), Expect = 3.780e-6
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
            W  A+  A    NR    S++  T+PYELWYG+RP  + +  +G   Y+++ +P  KL P+   C+ +G
Sbjct:   12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIG 77          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI0012D47DD2 (hypothetical protein n=1 Tax=Levilactobacillus brevis TaxID=1580 RepID=UPI0012D47DD2)

HSP 1 Score: 52.0 bits (123), Expect = 4.190e-6
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
            W  A+  A    NR    S++  T+PYELWYG+RP  + +  +G   Y+++ +P  KL P+   CI +G
Sbjct:   20 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCIFIG 85          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A0P4VIA9_9HEMI (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0P4VIA9_9HEMI)

HSP 1 Score: 49.3 bits (116), Expect = 5.200e-6
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH-KLAPRGASCIMLG 210
            WAEA+A AC + NRC  SS++ G  PY +WY +  T +    FG   Y     P   K  P+   C+++G
Sbjct:    2 WAEAIATACYIRNRCPSSSLNGGI-PYTIWYEKPFTVSYFRSFGCKGYSLDKTPNKDKFQPKAKECVLVG 70          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00136F9A8D (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136F9A8D)

HSP 1 Score: 51.6 bits (122), Expect = 6.700e-6
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
            W  A+  A    NR    S++  T+PYELWYG+RP  + +  +G   Y+++ +P  KL P+   C+ +G
Sbjct:   12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIG 77          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: Q9AYC5_ORYSJ (Putative retroelement pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AYC5_ORYSJ)

HSP 1 Score: 51.2 bits (121), Expect = 9.390e-6
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPG-HKLAPRGASCIMLG 210
            W EA+  A  + ++    S+D G +PYE WYGRRPT  ++  F  V Y++ +KP   KL  R    + +G
Sbjct:  586 WGEAVVAAVYVLSKSPMKSLD-GVTPYEAWYGRRPTVEHLRVFECVGYVKTAKPNLRKLDDRSTRMVFIG 654          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI001C68D9E7 (uncharacterized protein LOC111883520 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C68D9E7)

HSP 1 Score: 51.2 bits (121), Expect = 9.480e-6
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 LWAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH--KLAPRGASCIMLG 210
            LW EA+++A  + NR +  ++D GT+PYE+W GR+P   ++  FG V +++ +K  H  KL  R    + LG
Sbjct:  671 LWGEAVSHAVYVLNRLSTKALD-GTTPYEIWTGRKPHVGHLRVFGCVAHMKIAK-NHLKKLEDRSKKVVYLG 740          
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00053B3FFF (uncharacterized protein LOC104738171 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B3FFF)

HSP 1 Score: 50.4 bits (119), Expect = 1.700e-5
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLR-RSKPGHKLAPRGASCIMLG 210
            W E++  A  + NR T SS+    +PYEL +GRRP+++ I  FG + Y   RS+   K  PR   C+ +G
Sbjct:   90 WGESVLTATHLINR-TPSSMLKNKTPYELLFGRRPSYSMIRTFGCLCYAHLRSRDKDKFGPRSRKCVFVG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J5C4J0_9ASTE1.150e-846.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UMR8_HELAN6.090e-846.48Putative ribonuclease H-like domain-containing pro... [more]
A0A0J7NGT3_LASNI7.730e-738.57Retrovirus-related gag-pol polyprotein n=2 Tax=Las... [more]
UPI00115E8C8E3.780e-634.78hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
UPI0012D47DD24.190e-636.23hypothetical protein n=1 Tax=Levilactobacillus bre... [more]
A0A0P4VIA9_9HEMI5.200e-637.14Putative retrovirus-related pol polyprotein from t... [more]
UPI00136F9A8D6.700e-634.78hypothetical protein n=1 Tax=Ligilactobacillus sal... [more]
Q9AYC5_ORYSJ9.390e-637.14Putative retroelement pol polyprotein n=2 Tax=Oryz... [more]
UPI001C68D9E79.480e-637.50uncharacterized protein LOC111883520 n=1 Tax=Lactu... [more]
UPI00053B3FFF1.700e-538.57uncharacterized protein LOC104738171 n=1 Tax=Camel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149482contigH-elongata_contig149482:1357..1566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.036812-UTR-H-elongata_contig149482:1356..13711622929884.036812-UTR-H-elongata_contig149482:1356..1371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149482 1357..1371 +
1691679194.7027714-UTR-H-elongata_contig149482:1356..13711691679194.7027714-UTR-H-elongata_contig149482:1356..1371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149482 1357..1371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.07802-CDS-H-elongata_contig149482:1371..15661622929884.07802-CDS-H-elongata_contig149482:1371..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149482 1372..1566 +
1691679194.716327-CDS-H-elongata_contig149482:1371..15661691679194.716327-CDS-H-elongata_contig149482:1371..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149482 1372..1566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149482.3310.1prot_H-elongata_contig149482.3310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149482 1372..1566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149482.3310.1

>prot_H-elongata_contig149482.3310.1 ID=prot_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKP
GHKLAPRGASCIMLG
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mRNA from alignment at H-elongata_contig149482:1357..1566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149482.3310.1 ID=mRNA_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig149482:1357..1566+ (Himanthalia elongata Himel1 dioecious)
CTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAACCGATGCAC CTTCTCCTCCATCGACAGCGGCACCTCGCCATATGAGCTTTGGTACGGCC GACGTCCGACATTCGCCAACATCCCCCCGTTCGGGACCGTGGTATATCTA CGACGGTCGAAGCCGGGGCACAAACTAGCCCCCCGCGGGGCGAGCTGCAT CATGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig149482:1357..1566+

>mRNA_H-elongata_contig149482.3310.1 ID=mRNA_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig149482:1357..1566+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTACGCATGCGATATGTGGAACCGATGCACCTTCTCCTCCATCGA
CAGCGGCACCTCGCCATATGAGCTTTGGTACGGCCGACGTCCGACATTCG
CCAACATCCCCCCGTTCGGGACCGTGGTATATCTACGACGGTCGAAGCCG
GGGCACAAACTAGCCCCCCGCGGGGCGAGCTGCATCATGCTCGGGATGGC
GTACGCATGCGATATGTGGAACCGATGCACCTTCTCCTCCATCGACAGCG
GCACCTCGCCATATGAGCTTTGGTACGGCCGACGTCCGACATTCGCCAAC
ATCCCCCCGTTCGGGACCGTGGTATATCTACGACGGTCGAAGCCGGGGCA
CAAACTAGCCCCCCGCGGGGCGAGCTGCATCATGCTCGGG
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