mRNA_H-elongata_contig149482.3310.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A5J5C4J0_9ASTE (Integrase catalytic domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C4J0_9ASTE) HSP 1 Score: 59.3 bits (142), Expect = 1.150e-8 Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVY--LRRSKPGHKLAPRGASCIMLG 210
W A + A M NR ++D G SPYE+ YG+ PT++N PFG +V+ LR P H LAPR SC LG
Sbjct: 38 WVNAFSTATFMINRLPTLTLD-GLSPYEILYGKPPTYSNFHPFGCLVFPNLRNYAP-HNLAPRSRSCAFLG 106
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A251UMR8_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UMR8_HELAN) HSP 1 Score: 57.4 bits (137), Expect = 6.090e-8 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1 LWAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVY-LRRSKPGHKLAPRGASCIMLG 210
LW++A A A + NR SS+ + SPYE+ YGR PT++N+ FG V+ R HKLAPR A CI +G
Sbjct: 37 LWSDAFASATFIINRLP-SSVLNFKSPYEVLYGRCPTYSNLRIFGCRVFPYLRDYAKHKLAPRSAECIFIG 106
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI) HSP 1 Score: 54.3 bits (129), Expect = 7.730e-7 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH-KLAPRGASCIMLG 210
WA+A+A AC + NRC SS+ G +PYE W G P ++ FG V++ + P K APR +++G
Sbjct: 632 WADAVATACHIRNRCPSSSL-GGITPYEKWTGELPKLEHLRTFGAKVFVLDNNPAKDKFAPRSIEGVLIG 700
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00115E8C8E (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00115E8C8E) HSP 1 Score: 51.6 bits (122), Expect = 3.780e-6 Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
W A+ A NR S++ T+PYELWYG+RP + + +G Y+++ +P KL P+ C+ +G
Sbjct: 12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIG 77
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI0012D47DD2 (hypothetical protein n=1 Tax=Levilactobacillus brevis TaxID=1580 RepID=UPI0012D47DD2) HSP 1 Score: 52.0 bits (123), Expect = 4.190e-6 Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
W A+ A NR S++ T+PYELWYG+RP + + +G Y+++ +P KL P+ CI +G
Sbjct: 20 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCIFIG 85
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: A0A0P4VIA9_9HEMI (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0P4VIA9_9HEMI) HSP 1 Score: 49.3 bits (116), Expect = 5.200e-6 Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH-KLAPRGASCIMLG 210
WAEA+A AC + NRC SS++ G PY +WY + T + FG Y P K P+ C+++G
Sbjct: 2 WAEAIATACYIRNRCPSSSLNGGI-PYTIWYEKPFTVSYFRSFGCKGYSLDKTPNKDKFQPKAKECVLVG 70
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00136F9A8D (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136F9A8D) HSP 1 Score: 51.6 bits (122), Expect = 6.700e-6 Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGHKLAPRGASCIMLG 210
W A+ A NR S++ T+PYELWYG+RP + + +G Y+++ +P KL P+ C+ +G
Sbjct: 12 WGYALETAAFTLNRAPSKSVE--TTPYELWYGKRPKLSFLKVWGCDAYVKKLQP-EKLEPKAEKCVFIG 77
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: Q9AYC5_ORYSJ (Putative retroelement pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AYC5_ORYSJ) HSP 1 Score: 51.2 bits (121), Expect = 9.390e-6 Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPG-HKLAPRGASCIMLG 210
W EA+ A + ++ S+D G +PYE WYGRRPT ++ F V Y++ +KP KL R + +G
Sbjct: 586 WGEAVVAAVYVLSKSPMKSLD-GVTPYEAWYGRRPTVEHLRVFECVGYVKTAKPNLRKLDDRSTRMVFIG 654
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI001C68D9E7 (uncharacterized protein LOC111883520 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C68D9E7) HSP 1 Score: 51.2 bits (121), Expect = 9.480e-6 Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 1 LWAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPGH--KLAPRGASCIMLG 210
LW EA+++A + NR + ++D GT+PYE+W GR+P ++ FG V +++ +K H KL R + LG
Sbjct: 671 LWGEAVSHAVYVLNRLSTKALD-GTTPYEIWTGRKPHVGHLRVFGCVAHMKIAK-NHLKKLEDRSKKVVYLG 740
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Match: UPI00053B3FFF (uncharacterized protein LOC104738171 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B3FFF) HSP 1 Score: 50.4 bits (119), Expect = 1.700e-5 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 4 WAEAMAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLR-RSKPGHKLAPRGASCIMLG 210
W E++ A + NR T SS+ +PYEL +GRRP+++ I FG + Y RS+ K PR C+ +G
Sbjct: 90 WGESVLTATHLINR-TPSSMLKNKTPYELLFGRRPSYSMIRTFGCLCYAHLRSRDKDKFGPRSRKCVFVG 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149482.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149482.3310.1 >prot_H-elongata_contig149482.3310.1 ID=prot_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp MAYACDMWNRCTFSSIDSGTSPYELWYGRRPTFANIPPFGTVVYLRRSKPback to top mRNA from alignment at H-elongata_contig149482:1357..1566+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149482.3310.1 ID=mRNA_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig149482:1357..1566+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149482:1357..1566+ >mRNA_H-elongata_contig149482.3310.1 ID=mRNA_H-elongata_contig149482.3310.1|Name=mRNA_H-elongata_contig149482.3310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig149482:1357..1566+ (Himanthalia elongata Himel1 dioecious)back to top |