mRNA_H-elongata_contig14721.3201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14721.3201.1
Unique NamemRNA_H-elongata_contig14721.3201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14721.3201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14721contigH-elongata_contig14721:484..3839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1174
Cds size276
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.789807-UTR-H-elongata_contig14721:483..11641622929873.789807-UTR-H-elongata_contig14721:483..1164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 484..1164 -
1691679190.8330424-UTR-H-elongata_contig14721:483..11641691679190.8330424-UTR-H-elongata_contig14721:483..1164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 484..1164 -
1622929873.8083932-UTR-H-elongata_contig14721:1462..14871622929873.8083932-UTR-H-elongata_contig14721:1462..1487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 1463..1487 -
1691679190.8404355-UTR-H-elongata_contig14721:1462..14871691679190.8404355-UTR-H-elongata_contig14721:1462..1487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 1463..1487 -
1622929873.8701835-UTR-H-elongata_contig14721:3360..34351622929873.8701835-UTR-H-elongata_contig14721:3360..3435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 3361..3435 -
1691679190.8747764-UTR-H-elongata_contig14721:3360..34351691679190.8747764-UTR-H-elongata_contig14721:3360..3435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 3361..3435 -
1622929873.8851125-UTR-H-elongata_contig14721:3722..38391622929873.8851125-UTR-H-elongata_contig14721:3722..3839Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 3723..3839 -
1691679190.8820872-UTR-H-elongata_contig14721:3722..38391691679190.8820872-UTR-H-elongata_contig14721:3722..3839Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14721 3723..3839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.8234491-CDS-H-elongata_contig14721:1487..15921622929873.8234491-CDS-H-elongata_contig14721:1487..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 1488..1592 -
1691679190.8476655-CDS-H-elongata_contig14721:1487..15921691679190.8476655-CDS-H-elongata_contig14721:1487..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 1488..1592 -
1622929873.8359811-CDS-H-elongata_contig14721:2203..23291622929873.8359811-CDS-H-elongata_contig14721:2203..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 2204..2329 -
1691679190.8551683-CDS-H-elongata_contig14721:2203..23291691679190.8551683-CDS-H-elongata_contig14721:2203..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 2204..2329 -
1622929873.8550189-CDS-H-elongata_contig14721:3315..33601622929873.8550189-CDS-H-elongata_contig14721:3315..3360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 3316..3360 -
1691679190.8665519-CDS-H-elongata_contig14721:3315..33601691679190.8665519-CDS-H-elongata_contig14721:3315..3360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14721 3316..3360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14721.3201.1prot_H-elongata_contig14721.3201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14721 1488..3360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14721.3201.1

>prot_H-elongata_contig14721.3201.1 ID=prot_H-elongata_contig14721.3201.1|Name=mRNA_H-elongata_contig14721.3201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MAIDLTNLAALLKSQGDYDASEEHYKRALIIFEKELDPHHPRMARLLRDL
AELLYAKGQNAEVDELYQRILGIDKKPDGSIHPTVCMDLFI*
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mRNA from alignment at H-elongata_contig14721:484..3839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14721.3201.1 ID=mRNA_H-elongata_contig14721.3201.1|Name=mRNA_H-elongata_contig14721.3201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3356bp|location=Sequence derived from alignment at H-elongata_contig14721:484..3839- (Himanthalia elongata Himel1 dioecious)
GACGCCTCTGAGGAATATTACAAGCGTGCCCTCATCATCTTCGAAAAAGA
ACTTGATCCTCACCACCCACGGATCGCGAGGGTTCTGAGTGATCTGGCAG
GATTGTTACATGACAAGGTGGTACTCTCTGGGCAACTAACAATACACGGA
TTATTGTTTTAGTTGGGATCAATCGTGACACCGACCCCTCCAAAATGCCT
GATTACGTTAAGAAGGATCGAACGACCAGCATTAGGTCGCTTTACCTCAA
CTATTGTTGAGGAGCCGCGGGACTGGTCTAGGCATATTTGGTACAAACCC
TTTGTGGAACATTTTCGGCAACCTCCTTGAGGAAGAACGCTGCGTTGTTG
AAAGTCGACTCCAGCCCATTTCACCCTTCCTCGCGCTTTGGTTTTGAACT
ACAGGGCGAGCATGACGAGGCCAAAGAGCGTTATAGGCAAGCTATTAACA
TTCGTGAACATGGTCCCGACCACCTGGATATGGCTATAGATCTGACCAAC
TTGGCGGCGCTACTTAAGTCACAGGTGACTGTCGATATGTATTTGTTGGC
AATGAGAGCTCGACCTGGATCTTGACAGAGGCGAGGTCATGACCTCCTAA
CGAGGCTGTAAATCTTACGAATCAGCTGTAGCGGTCGAGCGTGTTGCCTC
CCGCTTGCTCTATAACCGAGACCCTGGCCATGTTGCTTTCATGTATGCAT
TTAATTAAAAGAAGAGCGACAGGTAGTTTTCAGTACCGTGCTATCTCTCG
CTATCGCCGATAAAGTCCTAGACCCCGTCTAGGCAGTAACCTTGAGATAC
TGGGACGTGCGGGAATGGAGAGGTGTAGAGGCTTTATCAATAGTGTGAGG
AAGCGACGACTCCGTGACTTGGCTCTCAAAAACGAAAAATACATGCCTTG
GTTTGGTTTGTGCTTCGAAGTGATGACTGCTTTTCACTTATGTTGGTCAT
CAGCAATCTGTCTGATCGATAACCGACGAAAGTCCAATAGTTATTTGATG
AAAGTATGACCACTAAGCACTTCCAAAGATTCCACTTTATATCCTAGCAC
TGTCACGGTAGCTATACATCCACTCCGGGCTTGTTTGGAAGTTCGTCCGG
GACTTCTTTTTCGTATTTGGAGTCGGAATTTCGATTCGACCTACGCCATT
CATCTTCCATAAGAAGTGAAAGCATTGACTGCGCTTTCGGTATTAATTAT
GTTTATTTAATTCCGCTTCGCCGCAAAACACCCGTGAAATCGATCCCTGG
TTATGGAGGGAGTGCCTACTGTGGCATTTATTTTTTTATAATGCTTCTGG
CTTTACACAAGGCAGGGATCGTACTAGAAGATAGCTATGAGCTAAATGCG
TTATCGCTCGTGCTCTTGGGAATCTGGTATAGCCTTACGGGTAATATGTG
GTGAGTGTATCGTTGATGAAGAATGTTGCGCAGTTAGTTGTTAATTAAAC
AGTTGCTCTGCATTTCAAGCTTTTATACAACTCCCGTCCCTCACGTTTCT
CGCATTCCAGGGTGACTACGATGCCTCTGAGGAACATTACAAGCGTGCCC
TCATCATCTTCGAAAAAGAACTTGATCCTCACCACCCACGGATGGCGAGG
CTTCTGCGTGATCTGGCGGAGTTGTTATATGCAAAGGTGGTACTCTCTGG
GCAGCTAAAAATACACAAATTATAATTTTAGCTGGGATCAATCGTGACCC
CGACCCCCCGAAACAATGCCTGATTACGTTAAGAAGGATCGAACGATAAG
CATTAGGTCGCTTTACCTCTACTATTCTTGAGGAGCCACGGGGGGATTGG
TCTAGGCATATTTAGTACAAACCCTTCGATGAACATCTCGGCAATTTTCT
TGAGGAAGAACGTTGCGTTGTTGAAAGTAGACTCCAGCCCATTTCACCCT
TTTTCGCGCTTTGGGTTACGCATCAAATTCAGTCTCGGTTGAGAAAATGG
ACAGGCTGACGTGGGACGGGACTATCGAACCCGTCTCGGGAGACCAGATT
CTCCGGGGCGAACGGGGACAGGGAAAATTATTTTTCTTTGTTCAGTTGAT
CACAAGCAGGAAGCAATCAAATCTTGTTGATCCTTACCCTGCTATACGTG
ATGAAGATCGCTTTTGGATCCTGGCCACGAAGTCGCGGTGATAATGTTTA
GTGATAAGTTTCACTAAAACGCCGTGATTTCTTGTAATATTTTCTAAATG
TCCGACTCGTCTGAAGTTTGACTGCTTTGATATCCATCGCTTTCCAGGGA
CAAAATGCTGAAGTCGATGAATTGTACCAACGGATTCTTGGAATTGATAA
GAAGCCAGACGGTTCTATTCATCCGACAGTGTGTATGGATCTCTTCATTT
AAGCGAGTTCTACGAATATATGAACAGGTGGGGTTGGATCTACTAGTTCT
AGCGATTTTATAGTTGAAAGTGCTGTGCCGCATAACTGTATACATTTTCT
AGGACATATGCAGGGTGGAAAATGTGATGCTCAACCAACGGTCTAGAAAG
ATAATATGCCAACGCAGGGTTGAAAGTCTATGGTGCTGTCATCTAGTGGG
AGATTCATGGTCAAAATAAGTGCTTCTAGAATGTCGCTACCAAACTAATC
CAGTTTTGTCAATGCTCTCTAATCAACTTAACTTCTCTGTATTATTTTGT
GATGCGACATGAACATGTTCCCAAGGGGAGAACAAGGACACACCGACCCT
TTTCGTGGCTGCTTTGAAATTCAAGACTCAAAAGCTTAAATCAAGAAGAC
ATCATTGCAACAAAACAGCTGATGCAAGCCGCGCAGGGCCTAGTTATGTG
AGCGAGAGGGCACGGAGTCCGTACCTACCAAGGGAAACGCTTGACATCGA
TAGAGAAGCGTTGCCTGGCTCACCGCCAGTACTCGATCTTCTGGCAGCTC
CAGGGGACTCGGGATCCTAGTACTGAACCTCAACGACTGAATACGGTTTC
TGTTTGAGCTCCCTCCTATGCTCCACTGTTGGTTTATAGTCTTGTACTGG
TAACTATGAGATTTCTACTCGCGAAACCGATTGACCGAGTATCGCTTAAA
TTGGGAATCGATGAGTCCAGCTTGGTTCTGAAACTTTGCGTCCGCCGCCG
AAGTAGGTTGCAGGGAGATGTTCCATTGAATATGCGCGCGTGCAGTAGAT
TTGACGGTTTTAAAAACCTAGCAACTTTTCGGCATATAGCTTTAGGGTTT
CATCCACGTCGTCCCTTTCCACCACCTGAGTTGCATATTTCTGTGGTTAG
TCAATATAACCGCTGGTTAGCTCTGCCGGGGTAGCTCAATTAGTAGCTTC
AGGTTTTATAGACTATCCGGCGTCGTTGCTTTTGTTACACTTCTTGGGTC
TGCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig14721:484..3839-

>mRNA_H-elongata_contig14721.3201.1 ID=mRNA_H-elongata_contig14721.3201.1|Name=mRNA_H-elongata_contig14721.3201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig14721:484..3839- (Himanthalia elongata Himel1 dioecious)
ATGGCTATAGATCTGACCAACTTGGCGGCGCTACTTAAGTCACAGATGGC
TATAGATCTGACCAACTTGGCGGCGCTACTTAAGTCACAGGGTGACTACG
ATGCCTCTGAGGAACATTACAAGCGTGCCCTCATCATCTTCGAAAAAGAA
CTTGATCCTCACCACCCACGGATGGCGAGGCTTCTGCGTGATCTGGCGGA
GTTGTTATATGCAAAGGGTGACTACGATGCCTCTGAGGAACATTACAAGC
GTGCCCTCATCATCTTCGAAAAAGAACTTGATCCTCACCACCCACGGATG
GCGAGGCTTCTGCGTGATCTGGCGGAGTTGTTATATGCAAAGGGACAAAA
TGCTGAAGTCGATGAATTGTACCAACGGATTCTTGGAATTGATAAGAAGC
CAGACGGTTCTATTCATCCGACAGTGTGTATGGATCTCTTCATTTAAGGA
CAAAATGCTGAAGTCGATGAATTGTACCAACGGATTCTTGGAATTGATAA
GAAGCCAGACGGTTCTATTCATCCGACAGTGTGTATGGATCTCTTCATTT
AA
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