mRNA_H-elongata_contig146845.3178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146845.3178.1
Unique NamemRNA_H-elongata_contig146845.3178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.980e-44
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++AVE VP KDAGDLYIRYAKLEE HGL+RHAA VLDRACAAV+ESERLDMFRLYVAKVE+WYGVTQTRQVYEKAIKDL ++GARE+
Sbjct:   32 DLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESERLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREM 121
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.400e-23
Identity = 47/90 (52.22%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++A++  PA  + +L+++YAKLEE HGLVRHA  V DRA  AV+E++R DM+ LY+ K E++YGVT+TRQ+YE+AIK L D  A+++
Sbjct:  604 DLFEQALKDCPADTSAELFLKYAKLEEQHGLVRHAMAVYDRAVQAVEEAQRFDMYMLYIRKAESFYGVTRTRQIYEQAIKLLPDVDAQKM 693
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A8H7Q492_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q492_MORIS)

HSP 1 Score: 97.8 bits (242), Expect = 9.940e-22
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAR 276
            D  +KA++G PAK A  LY+ Y KLEE HGL RHA  + DRA  AV + +RL+MF  Y+AK  A +GVT  R++YEKAI+ L D  AR
Sbjct:  594 DLFEKALDGCPAKYAKPLYLMYGKLEEEHGLARHAMRIYDRATRAVSDEDRLEMFNFYIAKATANFGVTAAREIYEKAIEALPDANAR 681
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A2R5LNU3_9ACAR (Putative mrna splicing factor n=4 Tax=Ornithodoros TaxID=6937 RepID=A0A2R5LNU3_9ACAR)

HSP 1 Score: 97.1 bits (240), Expect = 1.860e-21
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++ +EG PAK A  LY+ YAKLEE HGL RHA  + DR C AV   E+ +MF +Y+ K    YG+T TRQ+YE+AI+ L DD AR++
Sbjct:  576 DLFEQCLEGCPAKYAKALYLLYAKLEEEHGLARHAMAIYDRGCKAVLPEEQFEMFNVYIRKAAEIYGLTHTRQIYEQAIEVLQDDKARDM 665
[Close]
BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A0L0HH24_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HH24_SPIPD)

HSP 1 Score: 95.1 bits (235), Expect = 8.860e-21
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  + AV+ VP K A  LY+ YAKLEE+HGL RHA  + DRA  AV + +R +MF +Y+AK  +++G+T TR++YE+AI+ L D  AR++
Sbjct:  639 DLFEHAVDKVPPKFAKPLYLMYAKLEEDHGLARHAMRIYDRATRAVGDEDRYEMFTIYIAKATSYFGLTSTREIYERAIEALPDKQARDM 728
[Close]
BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A336L7F2_CULSO (CSON004338 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L7F2_CULSO)

HSP 1 Score: 94.0 bits (232), Expect = 2.240e-20
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  Q+ +E  P + A  LY+ YAKLEE HGL RHA  V +RA  AV + ER DMF LY+ KV   +G+ +TR++YEKAI+DL +  +RE+
Sbjct:  574 DLFQQCLENCPPEFAKALYLLYAKLEEEHGLARHAMAVYERATTAVKDEERFDMFNLYIKKVAEIFGLPKTREIYEKAIEDLPEKDSREM 663
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0006B0D847 (pre-mRNA-splicing factor SYF1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0D847)

HSP 1 Score: 93.6 bits (231), Expect = 3.060e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++ ++G PAK A  +Y+ YAKLEE HGL RHA  + DR+  AV+  E+ +MF +Y+ K    YGVT TRQ+YEKAI+ L D  A+++
Sbjct:  577 DLFEQCLDGCPAKFAKSIYLLYAKLEEEHGLARHAMAIYDRSTRAVEPDEQFEMFNIYIKKAAEIYGVTYTRQIYEKAIEGLPDHYAQQM 666
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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0008F9B59D (pre-mRNA-splicing factor SYF1 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9B59D)

HSP 1 Score: 93.6 bits (231), Expect = 3.070e-20
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++ +E  P K A  LY+ YAKLEE HGL RHA  V DRA  AV   E+ ++F +Y+ K    YGV +TRQ+YEKAI+ LTD+ ARE+
Sbjct:  570 DLFEQCLESCPQKFAKPLYLLYAKLEEEHGLARHAMAVYDRAVTAVLPEEQFELFNIYLKKAAEIYGVPKTRQIYEKAIEVLTDENAREM 659
[Close]
BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A507DJ62_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DJ62_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 3.310e-20
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++A+  VPA  A  LYI YAKLEE++GL RHA  + +RA +AV ++++  MF LY+AK  +++G+T TR++YEKAI+ L D  AR++
Sbjct:  236 DLFEQALANVPANQANTLYIAYAKLEEDYGLARHAMRIYNRATSAVADADKKSMFELYIAKATSYFGLTSTREIYEKAIEVLPDAQARDM 325
[Close]
BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0011449089 (pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011449089)

HSP 1 Score: 92.8 bits (229), Expect = 3.820e-20
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   13 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 282
            D  ++ +E  P K A  LY+ YAKLEE HGL RHA  V +RA  AV   E+ DMF +Y+ K    YGV +TRQ+YEKAI+DL D+  RE+
Sbjct:  299 DLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVYERATNAVLLEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEDLNDENTREM 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI4.980e-4483.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W251_9STRA2.400e-2352.22Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
A0A8H7Q492_MORIS9.940e-2253.41Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A2R5LNU3_9ACAR1.860e-2151.11Putative mrna splicing factor n=4 Tax=Ornithodoros... [more]
A0A0L0HH24_SPIPD8.860e-2148.89Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A336L7F2_CULSO2.240e-2050.00CSON004338 protein n=1 Tax=Culicoides sonorensis T... [more]
UPI0006B0D8473.060e-2047.78pre-mRNA-splicing factor SYF1-like n=1 Tax=Limulus... [more]
UPI0008F9B59D3.070e-2051.11pre-mRNA-splicing factor SYF1 n=1 Tax=Bemisia taba... [more]
A0A507DJ62_9FUNG3.310e-2047.78Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
UPI00114490893.820e-2051.11pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146845contigH-elongata_contig146845:815..1604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7G3C7
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-21_002830.1
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.9761653-CDS-H-elongata_contig146845:814..9011622929871.9761653-CDS-H-elongata_contig146845:814..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146845 815..901 -
1691679190.020922-CDS-H-elongata_contig146845:814..9011691679190.020922-CDS-H-elongata_contig146845:814..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146845 815..901 -
1622929871.9908743-CDS-H-elongata_contig146845:1409..16041622929871.9908743-CDS-H-elongata_contig146845:1409..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146845 1410..1604 -
1691679190.0331743-CDS-H-elongata_contig146845:1409..16041691679190.0331743-CDS-H-elongata_contig146845:1409..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146845 1410..1604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146845.3178.1prot_H-elongata_contig146845.3178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146845 815..1604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146845.3178.1

>prot_H-elongata_contig146845.3178.1 ID=prot_H-elongata_contig146845.3178.1|Name=mRNA_H-elongata_contig146845.3178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MCVFDASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAV
DESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV
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mRNA from alignment at H-elongata_contig146845:815..1604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146845.3178.1 ID=mRNA_H-elongata_contig146845.3178.1|Name=mRNA_H-elongata_contig146845.3178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=790bp|location=Sequence derived from alignment at H-elongata_contig146845:815..1604- (Himanthalia elongata Himel1 dioecious)
ATGTGCGTTTTTGACGCGTCTCAAAAGGCGGTGGAAGGCGTTCCCGCAAA
GGACGCCGGAGACCTGTACATCCGTTACGCGAAACTTGAGGAGAACCACG
GTCTTGTGCGCCACGCCGCGGGTGTTTTGGATCGTGCATGCGCTGCCGTC
GATGAATCGGAACGGCTTGACATGTTCCGGCTTTACGTCGCCAAGGTCTC
TGTTGTAGTCTGCCATAGTCTGCTGTAGTCTGCCATAGTCTGCTGTAGTA
CCAAAGAGAACTGTGGGGTGGGGATTGATGGGTAGGTTGATCTATGGGGC
GGCGGGTTGCTGAGGTGCTATCAGAGCTAGAGCTATTGTTAAAATTCTCA
AACATTGTGTGTGTGTTGTCATAACCTATTGCAGAGTAAGAATCAACCGG
ATTTGGTTGCCACCTGCTTGTGGTAGGATGATTAACCCTAACCATGCCAT
GGACCTATAACCGATCAAGATTGGACCGATCATCGATCAACATTGTAAGA
ACTGGACAACGGGAAAAACAAAATAAATCGGGGGGGACGATCAAAGGCAA
TCGAACATTAGTGAAACAAAGTCTTTTACAATAAGAAATATTTTAATTAA
TTTCAATTGAAAATGCTAGCCTGTCCGTGCCCTCGTCTTGCCTCGCCTTT
CTGTGAAAACCCCTCTTCACCCCCACGCATCTCATCTCATCTCATCTCAT
CAGGTGGAAGCGTGGTACGGCGTCACACAGACTCGGCAGGTCTATGAGAA
GGCCATCAAAGACCTCACCGACGATGGGGCAAGGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig146845:815..1604-

>mRNA_H-elongata_contig146845.3178.1 ID=mRNA_H-elongata_contig146845.3178.1|Name=mRNA_H-elongata_contig146845.3178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig146845:815..1604- (Himanthalia elongata Himel1 dioecious)
ATGTGCGTTTTTGACGCGTCTCAAAAGGCGGTGGAAGGCGTTCCCGCAAA
GGACGCCGGAGACCTGTACATCCGTTACGCGAAACTTGAGGAGAACCACG
GTCTTGTGCGCCACGCCGCGGGTGTTTTGGATCGTGCATGCGCTGCCGTC
GATGAATCGGAACGGCTTGACATGTTCCGGCTTTACGTCGCCAAGATGTG
CGTTTTTGACGCGTCTCAAAAGGCGGTGGAAGGCGTTCCCGCAAAGGACG
CCGGAGACCTGTACATCCGTTACGCGAAACTTGAGGAGAACCACGGTCTT
GTGCGCCACGCCGCGGGTGTTTTGGATCGTGCATGCGCTGCCGTCGATGA
ATCGGAACGGCTTGACATGTTCCGGCTTTACGTCGCCAAGGTGGAAGCGT
GGTACGGCGTCACACAGACTCGGCAGGTCTATGAGAAGGCCATCAAAGAC
CTCACCGACGATGGGGCAAGGGAGGTGGTGGAAGCGTGGTACGGCGTCAC
ACAGACTCGGCAGGTCTATGAGAAGGCCATCAAAGACCTCACCGACGATG
GGGCAAGGGAGGTG
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