prot_H-elongata_contig146845.3178.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig146845.3178.1
Unique Name	prot_H-elongata_contig146845.3178.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	94

Homology

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.980e-44
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++AVE VP KDAGDLYIRYAKLEE HGL+RHAA VLDRACAAV+ESERLDMFRLYVAKVE+WYGVTQTRQVYEKAIKDL ++GARE+
Sbjct:   32 DLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESERLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREM 121

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.400e-23
Identity = 47/90 (52.22%), Postives = 69/90 (76.67%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++A++  PA  + +L+++YAKLEE HGLVRHA  V DRA  AV+E++R DM+ LY+ K E++YGVT+TRQ+YE+AIK L D  A+++
Sbjct:  604 DLFEQALKDCPADTSAELFLKYAKLEEQHGLVRHAMAVYDRAVQAVEEAQRFDMYMLYIRKAESFYGVTRTRQIYEQAIKLLPDVDAQKM 693

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A8H7Q492_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q492_MORIS)

HSP 1 Score: 97.8 bits (242), Expect = 9.940e-22
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAR 92
            D  +KA++G PAK A  LY+ Y KLEE HGL RHA  + DRA  AV + +RL+MF  Y+AK  A +GVT  R++YEKAI+ L D  AR
Sbjct:  594 DLFEKALDGCPAKYAKPLYLMYGKLEEEHGLARHAMRIYDRATRAVSDEDRLEMFNFYIAKATANFGVTAAREIYEKAIEALPDANAR 681

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A2R5LNU3_9ACAR (Putative mrna splicing factor n=4 Tax=Ornithodoros TaxID=6937 RepID=A0A2R5LNU3_9ACAR)

HSP 1 Score: 97.1 bits (240), Expect = 1.860e-21
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++ +EG PAK A  LY+ YAKLEE HGL RHA  + DR C AV   E+ +MF +Y+ K    YG+T TRQ+YE+AI+ L DD AR++
Sbjct:  576 DLFEQCLEGCPAKYAKALYLLYAKLEEEHGLARHAMAIYDRGCKAVLPEEQFEMFNVYIRKAAEIYGLTHTRQIYEQAIEVLQDDKARDM 665

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A0L0HH24_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HH24_SPIPD)

HSP 1 Score: 95.1 bits (235), Expect = 8.860e-21
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  + AV+ VP K A  LY+ YAKLEE+HGL RHA  + DRA  AV + +R +MF +Y+AK  +++G+T TR++YE+AI+ L D  AR++
Sbjct:  639 DLFEHAVDKVPPKFAKPLYLMYAKLEEDHGLARHAMRIYDRATRAVGDEDRYEMFTIYIAKATSYFGLTSTREIYERAIEALPDKQARDM 728

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A336L7F2_CULSO (CSON004338 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L7F2_CULSO)

HSP 1 Score: 94.0 bits (232), Expect = 2.240e-20
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  Q+ +E  P + A  LY+ YAKLEE HGL RHA  V +RA  AV + ER DMF LY+ KV   +G+ +TR++YEKAI+DL +  +RE+
Sbjct:  574 DLFQQCLENCPPEFAKALYLLYAKLEEEHGLARHAMAVYERATTAVKDEERFDMFNLYIKKVAEIFGLPKTREIYEKAIEDLPEKDSREM 663

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0006B0D847 (pre-mRNA-splicing factor SYF1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0D847)

HSP 1 Score: 93.6 bits (231), Expect = 3.060e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++ ++G PAK A  +Y+ YAKLEE HGL RHA  + DR+  AV+  E+ +MF +Y+ K    YGVT TRQ+YEKAI+ L D  A+++
Sbjct:  577 DLFEQCLDGCPAKFAKSIYLLYAKLEEEHGLARHAMAIYDRSTRAVEPDEQFEMFNIYIKKAAEIYGVTYTRQIYEKAIEGLPDHYAQQM 666

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0008F9B59D (pre-mRNA-splicing factor SYF1 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9B59D)

HSP 1 Score: 93.6 bits (231), Expect = 3.070e-20
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++ +E  P K A  LY+ YAKLEE HGL RHA  V DRA  AV   E+ ++F +Y+ K    YGV +TRQ+YEKAI+ LTD+ ARE+
Sbjct:  570 DLFEQCLESCPQKFAKPLYLLYAKLEEEHGLARHAMAVYDRAVTAVLPEEQFELFNIYLKKAAEIYGVPKTRQIYEKAIEVLTDENAREM 659

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: A0A507DJ62_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DJ62_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 3.310e-20
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++A+  VPA  A  LYI YAKLEE++GL RHA  + +RA +AV ++++  MF LY+AK  +++G+T TR++YEKAI+ L D  AR++
Sbjct:  236 DLFEQALANVPANQANTLYIAYAKLEEDYGLARHAMRIYNRATSAVADADKKSMFELYIAKATSYFGLTSTREIYEKAIEVLPDAQARDM 325

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BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Match: UPI0011449089 (pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011449089)

HSP 1 Score: 92.8 bits (229), Expect = 3.820e-20
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 0

Query:    5 DASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAVDESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV 94
            D  ++ +E  P K A  LY+ YAKLEE HGL RHA  V +RA  AV   E+ DMF +Y+ K    YGV +TRQ+YEKAI+DL D+  RE+
Sbjct:  299 DLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVYERATNAVLLEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEDLNDENTREM 388

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot

BLAST of mRNA_H-elongata_contig146845.3178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G3C7_ECTSI	4.980e-44	83.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2W251_9STRA	2.400e-23	52.22	Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin...	[more]
A0A8H7Q492_MORIS	9.940e-22	53.41	Uncharacterized protein n=1 Tax=Mortierella isabel...	[more]
A0A2R5LNU3_9ACAR	1.860e-21	51.11	Putative mrna splicing factor n=4 Tax=Ornithodoros...	[more]
A0A0L0HH24_SPIPD	8.860e-21	48.89	Uncharacterized protein n=2 Tax=Spizellomyces TaxI...	[more]
A0A336L7F2_CULSO	2.240e-20	50.00	CSON004338 protein n=1 Tax=Culicoides sonorensis T...	[more]
UPI0006B0D847	3.060e-20	47.78	pre-mRNA-splicing factor SYF1-like n=1 Tax=Limulus...	[more]
UPI0008F9B59D	3.070e-20	51.11	pre-mRNA-splicing factor SYF1 n=1 Tax=Bemisia taba...	[more]
A0A507DJ62_9FUNG	3.310e-20	47.78	Uncharacterized protein n=1 Tax=Synchytrium endobi...	[more]
UPI0011449089	3.820e-20	51.11	pre-mRNA-splicing factor SYF1-like n=1 Tax=Formica...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 3..92 e-value: 1.2E-7 score: 33.8
None	No IPR available	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 7..93
None	No IPR available	PANTHER	PTHR11246:SF5	PRE-MRNA-SPLICING FACTOR SYF1	coord: 7..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig146845	contig	H-elongata_contig146845:815..1604 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig146845.3178.1	mRNA_H-elongata_contig146845.3178.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig146845 815..1604 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig146845.3178.1 ID=prot_H-elongata_contig146845.3178.1|Name=mRNA_H-elongata_contig146845.3178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MCVFDASQKAVEGVPAKDAGDLYIRYAKLEENHGLVRHAAGVLDRACAAV
DESERLDMFRLYVAKVEAWYGVTQTRQVYEKAIKDLTDDGAREV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf