mRNA_H-elongata_contig146503.3164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146503.3164.1
Unique NamemRNA_H-elongata_contig146503.3164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 9.440e-49
Identity = 103/259 (39.77%), Postives = 145/259 (55.98%), Query Frame = 2
Query:  587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
            V+VDD+  A  TK   +Q  +DL   +P+K LGE  +Y GC+  RDR A  LT  Q  Y + + E     W         W+  DS   +  VE     P+R ++G+L+W A +TRPDI+ A   +A++       HWR     L Y  RT   GI++     +G  L  + DADY +    RRSVSGG VM AGGAI+WFS+ QK    ++ ++EYVA+A+M  E+ FLR+V  FM P  +   I ++EDNEGAI++A
Sbjct:   68 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIA 321          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.340e-48
Identity = 103/259 (39.77%), Postives = 146/259 (56.37%), Query Frame = 2
Query:  587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
            V+VDD+  A  TK   +Q  +DL   +P+K LGE  +Y GC+  RDR A  LT  Q  Y + + E     W         WK  D    +  VE     P+R +VG+L+W A +TRPDI+ +   +A+++      HW+     L Y  RT   GI++     +G  L  +V+ADY +    RRSVSGG VM AGGAI+WFS+ QK    ++ ++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++A
Sbjct:  120 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH----PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 373          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.030e-46
Identity = 103/259 (39.77%), Postives = 144/259 (55.60%), Query Frame = 2
Query:  587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
            V+VDD+  A  TK   +Q  +DL   +P+K LGE  +Y GC+  RDR A  LT  Q  Y + + E     W         WK  D    +  VE     P+R +VG+L+W A +TRPDI+ +   +A+++      HW+     L Y  RT   GI +     +G  L  +VDADY +    RRSVSGG VM AGGAI+WFS+ QK    ++  +E+VA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++A
Sbjct:  122 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH----PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 375          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.020e-45
Identity = 102/267 (38.20%), Postives = 146/267 (54.68%), Query Frame = 2
Query:  584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAE--------PSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
            S+YVDDLL+ + T          L     +KDLGEA   LG  I R+R+  TL   Q +Y +TV E        P + P+      K L KS    T  ++  M   PYR +VG+LM+ A  TRPD++F   QL++F DN  P HWR  ++AL+YL  TR  G+  GG        LSA+VDADY  CPDTRR VSG  ++  G  ISW ++ Q +   ++ E+E+VAL+  + E  +++Q+   +    D  + I+EDN+  I +A
Sbjct: 1670 SLYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFE---SSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIA 1933          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.530e-45
Identity = 101/267 (37.83%), Postives = 146/267 (54.68%), Query Frame = 2
Query:  584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAE--------PSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
            S+YVD LL+ ++T          L     +KDLGEA   LG  I R+R+  TL   Q +Y +TV E        P + P+      K L KS    T  ++  M   PYR +VG+ M+ A  TRPD++F   QL++F DN GP HWR  ++AL+YL  TR  G+  GG        LSA+VDADY  CPDTRR VSG  ++  G  ISW ++ Q +   ++ E+E+VAL+  + E  +++Q+   +    D  + I+EDN+  I +A
Sbjct:  526 SLYVDGLLIIASTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFE---SSKTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIA 789          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 8.830e-45
Identity = 98/267 (36.70%), Postives = 146/267 (54.68%), Query Frame = 2
Query:  584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTV--------AEPSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
            S+YVDDLL+ + T          L  C  +KDLGEA   LG  I R+R+A T+   Q +Y +TV        + P + P+        L KS    T  ++  M   PYR +VG+LM+ A  TRPD++F   QL++F +N GP HWR  ++ L+Y+  TR  G+  GG        LSA+VDADY  C DTRR VSG  +++ G  ISW ++ Q +   ++ E+E+VAL   + E  +++Q+   +    D  + I+EDN+  I +A
Sbjct:  261 SLYVDDLLIIAPTTSLVSSMKLSLFDCFQMKDLGEARDILGWQIERNRSARTIFLHQTRYCETVVTRFDMASSHPVHTPFECTT---KLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALVLCIQECLYIQQLASELKQSSDQPVIIYEDNQSTIHVA 524          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.760e-44
Identity = 97/259 (37.45%), Postives = 141/259 (54.44%), Query Frame = 2
Query:  587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKSDSPQTDA-EVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMA 1357
            V+VDD+      +R ++    DL   +P+K+LGE  +Y  C   RD     L   Q ++ + +A      W    G           TD  E E    +P+RE+VG+LMW AT TRPDI+ A   +A++  +    HW+     L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    ++ E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct:    5 VHVDDIFAVGQKERCDKFG-EDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEW----GRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 258          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 6.320e-44
Identity = 99/248 (39.92%), Postives = 138/248 (55.65%), Query Frame = 2
Query:  620 TKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
            TK   +Q  +DL   +P+K LGE  +Y GC+  RDR A  LT  Q  Y + + E     W         W+  DS   +  VE     P+R ++G+L+W A +TRPDI+ A   +A++       HWR     L Y  RT   GI++     +G  L  + DADY +    RRSVSGG VM AGGAI+WFS+ QK    ++ ++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++A
Sbjct:  382 TKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERYGVEWGGGIPLPTTWRLWDSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 625          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0WNM5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNM5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.620e-43
Identity = 98/267 (36.70%), Postives = 145/267 (54.31%), Query Frame = 2
Query:  584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTV--------AEPSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
            S+YVDDLL+ + T          L     +KDLGEA   LG  I R+R+A TL   Q +Y +TV        + P + P+        L KS    T  ++  M   PYR +VG+LM+ A  TRPD++F   QL++F +N GP HWR  ++ L+Y+  TR  G+  GG        LSA+VDADY  C DTRR VSG  +++ G  ISW ++ Q +   ++ E+E+VALA  +    +++Q+   +    D  + I+EDN+  I +A
Sbjct:  185 SLYVDDLLIIAPTTSLVSSMKLSLFDRFQMKDLGEARDILGWQIERNRSARTLFLHQTRYCETVVTRFDMASSHPVHTPFECTT---KLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALALCIQVSLYIQQLASELKQSSDQPVIIYEDNQSTIHVA 448          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.820e-43
Identity = 96/258 (37.21%), Postives = 140/258 (54.26%), Query Frame = 2
Query:  587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKSDSPQTDA-EVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKM 1354
            V+VDD+      +R ++    DL   +P+K+LGE  +Y  C   RD     L   Q ++ + +A      W    G           TD  E E    +P+RE+VG+LMW AT TRPDI+ A   +A++  +    HW+     L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    ++ E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++
Sbjct:   60 VHVDDIFAVGQKERCDKFG-EDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEW----GRSVPLPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQI 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE9.440e-4939.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRZ9_9PHAE4.340e-4839.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG67_9PHAE6.030e-4639.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0W780_9STRA2.020e-4538.20Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0W6P6_9STRA4.530e-4537.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W2A7_9STRA8.830e-4536.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE1.760e-4437.45Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE6.320e-4439.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0WNM5_9STRA1.620e-4336.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE1.820e-4337.21Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146503contigH-elongata_contig146503:254..1632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.4
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog3641.EOY17116
EggNOG free text desc.Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GFVM@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1357
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146503.3164.1prot_H-elongata_contig146503.3164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146503 275..742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.8108778-UTR-H-elongata_contig146503:253..2741622929870.8108778-UTR-H-elongata_contig146503:253..274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 254..274 +
1691679189.6320362-UTR-H-elongata_contig146503:253..2741691679189.6320362-UTR-H-elongata_contig146503:253..274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 254..274 +
1622929870.8409312-UTR-H-elongata_contig146503:742..10351622929870.8409312-UTR-H-elongata_contig146503:742..1035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 743..1035 +
1691679189.6487563-UTR-H-elongata_contig146503:742..10351691679189.6487563-UTR-H-elongata_contig146503:742..1035Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 743..1035 +
1622929870.857248-UTR-H-elongata_contig146503:1057..16321622929870.857248-UTR-H-elongata_contig146503:1057..1632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 1058..1632 +
1691679189.6568065-UTR-H-elongata_contig146503:1057..16321691679189.6568065-UTR-H-elongata_contig146503:1057..1632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146503 1058..1632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.8256269-CDS-H-elongata_contig146503:274..7421622929870.8256269-CDS-H-elongata_contig146503:274..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146503 275..742 +
1691679189.6409042-CDS-H-elongata_contig146503:274..7421691679189.6409042-CDS-H-elongata_contig146503:274..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146503 275..742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146503.3164.1

>prot_H-elongata_contig146503.3164.1 ID=prot_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKR
KFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAA
LGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRKQVGLLKKTMYGLVH
TGLLW*
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mRNA from alignment at H-elongata_contig146503:254..1632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146503.3164.1 ID=mRNA_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-elongata_contig146503:254..1632+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGACAACCATGGGCGAAGCGCAAGCGTCGTCGAAGTG GCCGCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATCGCTC GAGGCGTGTGGCACGTGGTGGAGCGCCCAAAAGGGAAGACGATGTTGGGC ACGAGAGTTGTTTTCAAGCGAAAATTCGACAAGGATGGAAGGATCGAAAA GTATAAATGCCGTCTCGTGGCGCAGGGTTTCAGGCAGGTAATAGGCATAC ACTACGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATG GTACTCAGAATGGTCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGT CGACAAGGCCTACCTGAAGGCCGATGTGGAGGAGGAGATCTACGTTGAGC TCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAG ACAATGTACGGACTCGTCCACACCGGGCTGCTGTGGTAAAAAAAGTTCGT GATCGAGCTCGCGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCA TGTTCTGGCGGGTCCTCCACGGGGTAGTGGTAGTCGGTCTACGTCGACGA TCTTCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGG ACCTGTGCTCCTGTCTCCCCATTAAGGATCTGGGGGAGGCTTCGTATTAC CTGGGATGCCACATCACGCGGGACCGGAACGCCGAGACACTGACGTTCGA CCAGCATCAGTACATACAAACTGTGGCGGAACGTTTTGGCGTGACGAAGA CCAGCATCATACCGTCCGTGGCNNNNNNNNNNAGGAGGAAAAGCCCTTTG GAAATCAGATAGCCCGCAAACGGACGCAGAGGTTGAGGAAATGCGCCAGA TTCCCTACCGAGAAATTGTTGGGGCCCTAATGTGGGCAGCGACGATGACC AGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAA CTCGGGACCGACACACTGGAGGGAAGTCCAGAAAGCCTTGCAATATTTAT GGCGCACTCGGGACCTCGGGATCACCTACGGAGGTGAACCGGGGGCGGGG ACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACAC ACGTCGCTCAGTATCGGGGGGGGCGGTGATGATGGCTGGCGGGGCCATTA GTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGCCCGAATCG GAATACGTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACA GGTCAAGGAGTTCATGACCCCCCCAATCGACGTCGCCATCAAGATACACG AGGACAACGAAGGTGCAATCAAGATGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig146503:254..1632+

>mRNA_H-elongata_contig146503.3164.1 ID=mRNA_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig146503:254..1632+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAAGCGCAAGCGTCGTCGAAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAATCGCTCGAGGCGTGTGGCACGTGGTGG
AGCGCCCAAAAGGGAAGACGATGTTGGGCACGAGAGTTGTTTTCAAGCGA
AAATTCGACAAGGATGGAAGGATCGAAAAGTATAAATGCCGTCTCGTGGC
GCAGGGTTTCAGGCAGGTAATAGGCATACACTACGAGGAATCCTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGAATGGTCGCGGCT
CTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACAAGGCCTACCTGAAGGC
CGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACT
CCAGGAAGCAAGTCGGCCTACTAAAGAAGACAATGTACGGACTCGTCCAC
ACCGGGCTGCTGTGGTAAATGGGCGAAGCGCAAGCGTCGTCGAAGTGGCC
GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATCGCTCGAG
GCGTGTGGCACGTGGTGGAGCGCCCAAAAGGGAAGACGATGTTGGGCACG
AGAGTTGTTTTCAAGCGAAAATTCGACAAGGATGGAAGGATCGAAAAGTA
TAAATGCCGTCTCGTGGCGCAGGGTTTCAGGCAGGTAATAGGCATACACT
ACGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTA
CTCAGAATGGTCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGA
CAAGGCCTACCTGAAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCC
CGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGACA
ATGTACGGACTCGTCCACACCGGGCTGCTGTGGTAA
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