mRNA_H-elongata_contig146503.3164.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 180 bits (457), Expect = 9.440e-49 Identity = 103/259 (39.77%), Postives = 145/259 (55.98%), Query Frame = 2
Query: 587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
V+VDD+ A TK +Q +DL +P+K LGE +Y GC+ RDR A LT Q Y + + E W W+ DS + VE P+R ++G+L+W A +TRPDI+ A +A++ HWR L Y RT GI++ +G L + DADY + RRSVSGG VM AGGAI+WFS+ QK ++ ++EYVA+A+M E+ FLR+V FM P + I ++EDNEGAI++A
Sbjct: 68 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIA 321
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 180 bits (456), Expect = 4.340e-48 Identity = 103/259 (39.77%), Postives = 146/259 (56.37%), Query Frame = 2
Query: 587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
V+VDD+ A TK +Q +DL +P+K LGE +Y GC+ RDR A LT Q Y + + E W WK D + VE P+R +VG+L+W A +TRPDI+ + +A+++ HW+ L Y RT GI++ +G L +V+ADY + RRSVSGG VM AGGAI+WFS+ QK ++ ++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++A
Sbjct: 120 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH----PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 373
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE) HSP 1 Score: 177 bits (448), Expect = 6.030e-46 Identity = 103/259 (39.77%), Postives = 144/259 (55.60%), Query Frame = 2
Query: 587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
V+VDD+ A TK +Q +DL +P+K LGE +Y GC+ RDR A LT Q Y + + E W WK D + VE P+R +VG+L+W A +TRPDI+ + +A+++ HW+ L Y RT GI + +G L +VDADY + RRSVSGG VM AGGAI+WFS+ QK ++ +E+VA+A+M E+ FLRQV FM P + I ++EDNEGAI++A
Sbjct: 122 VHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH----PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 375
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA) HSP 1 Score: 180 bits (456), Expect = 2.020e-45 Identity = 102/267 (38.20%), Postives = 146/267 (54.68%), Query Frame = 2
Query: 584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAE--------PSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
S+YVDDLL+ + T L +KDLGEA LG I R+R+ TL Q +Y +TV E P + P+ K L KS T ++ M PYR +VG+LM+ A TRPD++F QL++F DN P HWR ++AL+YL TR G+ GG LSA+VDADY CPDTRR VSG ++ G ISW ++ Q + ++ E+E+VAL+ + E +++Q+ + D + I+EDN+ I +A
Sbjct: 1670 SLYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFE---SSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIA 1933
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA) HSP 1 Score: 178 bits (451), Expect = 4.530e-45 Identity = 101/267 (37.83%), Postives = 146/267 (54.68%), Query Frame = 2
Query: 584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAE--------PSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
S+YVD LL+ ++T L +KDLGEA LG I R+R+ TL Q +Y +TV E P + P+ K L KS T ++ M PYR +VG+ M+ A TRPD++F QL++F DN GP HWR ++AL+YL TR G+ GG LSA+VDADY CPDTRR VSG ++ G ISW ++ Q + ++ E+E+VAL+ + E +++Q+ + D + I+EDN+ I +A
Sbjct: 526 SLYVDGLLIIASTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFE---SSKTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIA 789
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA) HSP 1 Score: 174 bits (441), Expect = 8.830e-45 Identity = 98/267 (36.70%), Postives = 146/267 (54.68%), Query Frame = 2
Query: 584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTV--------AEPSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
S+YVDDLL+ + T L C +KDLGEA LG I R+R+A T+ Q +Y +TV + P + P+ L KS T ++ M PYR +VG+LM+ A TRPD++F QL++F +N GP HWR ++ L+Y+ TR G+ GG LSA+VDADY C DTRR VSG +++ G ISW ++ Q + ++ E+E+VAL + E +++Q+ + D + I+EDN+ I +A
Sbjct: 261 SLYVDDLLIIAPTTSLVSSMKLSLFDCFQMKDLGEARDILGWQIERNRSARTIFLHQTRYCETVVTRFDMASSHPVHTPFECTT---KLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALVLCIQECLYIQQLASELKQSSDQPVIIYEDNQSTIHVA 524
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.760e-44 Identity = 97/259 (37.45%), Postives = 141/259 (54.44%), Query Frame = 2
Query: 587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKSDSPQTDA-EVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMA 1357
V+VDD+ +R ++ DL +P+K+LGE +Y C RD L Q ++ + +A W G TD E E +P+RE+VG+LMW AT TRPDI+ A +A++ + HW+ L Y+ RT +GIT+ G + +VDADY + RRSVSGG VM GG ++WFSR QK ++ E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A
Sbjct: 5 VHVDDIFAVGQKERCDKFG-EDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEW----GRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 258
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 174 bits (441), Expect = 6.320e-44 Identity = 99/248 (39.92%), Postives = 138/248 (55.65%), Query Frame = 2
Query: 620 TKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKS-DSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMA 1357
TK +Q +DL +P+K LGE +Y GC+ RDR A LT Q Y + + E W W+ DS + VE P+R ++G+L+W A +TRPDI+ A +A++ HWR L Y RT GI++ +G L + DADY + RRSVSGG VM AGGAI+WFS+ QK ++ ++EYVA+A+M E+ FLRQV FM P + I ++EDNEGAI++A
Sbjct: 382 TKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERYGVEWGGGIPLPTTWRLWDSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIA 625
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6G0WNM5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNM5_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.620e-43 Identity = 98/267 (36.70%), Postives = 145/267 (54.31%), Query Frame = 2
Query: 584 SVYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTV--------AEPSYRPWXXXXGGKALWKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTK-LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 1357
S+YVDDLL+ + T L +KDLGEA LG I R+R+A TL Q +Y +TV + P + P+ L KS T ++ M PYR +VG+LM+ A TRPD++F QL++F +N GP HWR ++ L+Y+ TR G+ GG LSA+VDADY C DTRR VSG +++ G ISW ++ Q + ++ E+E+VALA + +++Q+ + D + I+EDN+ I +A
Sbjct: 185 SLYVDDLLIIAPTTSLVSSMKLSLFDRFQMKDLGEARDILGWQIERNRSARTLFLHQTRYCETVVTRFDMASSHPVHTPFECTT---KLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALALCIQVSLYIQQLASELKQSSDQPVIIYEDNQSTIHVA 448
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.820e-43 Identity = 96/258 (37.21%), Postives = 140/258 (54.26%), Query Frame = 2
Query: 587 VYVDDLLVASATKRDEEQAVRDLCSCLPIKDLGEASYYLGCHITRDRNAETLTFDQHQYIQTVAEPSYRPWXXXXGGKALWKSDSPQTDA-EVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNSGPTHWREVQKALQYLWRTRDLGITYGGEPGAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASPESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKM 1354
V+VDD+ +R ++ DL +P+K+LGE +Y C RD L Q ++ + +A W G TD E E +P+RE+VG+LMW AT TRPDI+ A +A++ + HW+ L Y+ RT +GIT+ G + +VDADY + RRSVSGG VM GG ++WFSR QK ++ E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++
Sbjct: 60 VHVDDIFAVGQKERCDKFG-EDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEW----GRSVPLPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQI 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146503.3164.1 >prot_H-elongata_contig146503.3164.1 ID=prot_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGEAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRback to top mRNA from alignment at H-elongata_contig146503:254..1632+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146503.3164.1 ID=mRNA_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-elongata_contig146503:254..1632+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146503:254..1632+ >mRNA_H-elongata_contig146503.3164.1 ID=mRNA_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig146503:254..1632+ (Himanthalia elongata Himel1 dioecious)back to top |