mRNA_H-elongata_contig14565.3121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14565.3121.1
Unique NamemRNA_H-elongata_contig14565.3121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.620e-47
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            S+PAYPM+I   GTTDLS   G + ++ NGV+MFSAWA +  V+YE TAFYLE DT D CGGH+T  G YHYHGT GCL+EQ     G    +HSP LGWSYDGFP+YG LGP G+EM
Sbjct:  106 SVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEM 219          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.050e-46
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            SIPAYPM++ D GTTDLS   G + ++ NGV+M+SAWA +   +YE TAFYLE DTLD CGGH+T  G YHYH T GCL+EQ     G    +HSP LGWSYDGFP+YG LGP G+EM
Sbjct:  121 SIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEM 234          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.220e-32
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   76 ILVNGVAMFSAWATE-PAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            +++NGVA++S++A +  A  Y + A  L GDT D CGG +T +G YHYH  PGCL+EQ M  + LT  DHSP LGW+YDGFP+YG LGP G+EM
Sbjct:    1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM 94          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU)

HSP 1 Score: 106 bits (265), Expect = 2.070e-24
Identity = 59/139 (42.45%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 SIPAYPMMIGDN------GTTDLSETNGQVAILVNGVAMFSAWA------------TEPAVDYESTAFYLEGDTLDACGGHST--TEGW-YHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            SIPAYP   G +        TDLSE  G V + +NGVA+++AWA             +  +   S A   EG+T D CGGHS+  + G+ YHYH  P CL  Q+    G  +  HSP +GW YDGFP+YG  GPDG++M
Sbjct:  403 SIPAYPFFNGASYEDALAAATDLSEQGGDVGLTLNGVAIYTAWAGSYDXXXXXXIDEDDVMSETSNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQL----GQYIGQHSPQVGWMYDGFPVYGPFGPDGVQM 537          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A6H5LAI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAI5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.030e-23
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQ 246
            S PAYP +  D  +TDLSET G + ILV+GV M SA+A  P  D++STA   E +T DAC  HSTTEG YH HGTPGC  EQ
Sbjct:  174 STPAYPQLFADGYSTDLSETIGLIGILVDGVPMCSAFAGTPVTDWDSTAMAAEYNTFDACASHSTTEGHYHTHGTPGCFMEQ 255          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A7S2G312_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G312_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 6.690e-22
Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWA-TEPAVDYESTAFYLEGDTLDACGGHS--TTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            +IP  P       T+ LS   G V I  +G  ++SA+A +     Y ++A YLEG+T D CGGHS  TT   YHYH  P CL  Q+    G+   +HSP +GW  DGFP+YG LGP+G  M
Sbjct:   64 TIPVSPQYSASQETS-LSAVGGAVGIARDGTHIYSAFAGSYTLTGYSTSAAYLEGNTFDECGGHSSSTTTPSYHYHVVPSCLLRQL----GMASGEHSPQVGWMADGFPVYGPLGPNGAVM 179          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A0M0JHL1_9EUKA (HintN domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHL1_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 1.440e-19
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   43 TDLSETNGQVAILVNGVAMFSAWA--TEPAVDYESTAFYLEGDTLDACGGHS--TTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            T L+     V +  +G  ++S +A  + P   + ++A YLEG+T D CGGHS  TT   YHYH  P CL +Q+    G+T   HSP +GW  DGFP+YG LGP+G+ M
Sbjct:   39 TSLTALGAIVGVAYDGGMIYSPFAGPSYPLTGWTTSAAYLEGNTFDQCGGHSSSTTSPSYHYHVAPSCLLKQL----GMTAGQHSPQIGWMADGFPLYGPLGPNGVVM 142          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D8LCJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.470e-16
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGT 225
            SI AYPMM  DNGT DLS  +G + ++ NGV+           DY  TAFYLE D+ D CGGH+T  G+YHYHGT
Sbjct:   78 SILAYPMMSADNGTKDLSSASGTICMMRNGVSHVQ--------DYFDTAFYLEADSFDPCGGHATPNGFYHYHGT 144          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.110e-16
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    4 IPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATE------PAVDY-ESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGE--GLTLSD-HSPFLGWSYDGFPMYGHLGPDGIEM 354
            +PA P +       +L  + G +A  +NGV  +S           P +D  ++TA ++   + D C GHST  G YHYH  P CL  Q       G T+++ HSP +GW+ DGFP+YG LGP G+E+
Sbjct:  104 VPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWI---SFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEI 227          
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU)

HSP 1 Score: 81.6 bits (200), Expect = 6.260e-16
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query:    4 IPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDY-ESTAFYLEGDTLDACGGHSTT-----EGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
            IPAYP++  +N      E    +A+ +NGV ++S        D  +      E  + D CGGH+        G YHYH  P CLE Q+    G     HSP +GWS DGFP+YG LGP G+ M
Sbjct:   78 IPAYPVLATENDAWPECEKE-TIAMALNGVPIYSGAVGSGDCDILDLDDANAEWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTM 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE1.620e-4761.86YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI4.050e-4661.02YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ6_ECTSI2.220e-3255.32YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
R1DZX8_EMIHU2.070e-2442.45EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
A0A6H5LAI5_9PHAE2.030e-2358.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G312_9EUKA6.690e-2243.80Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0JHL1_9EUKA1.440e-1943.52HintN domain-containing protein n=1 Tax=Chrysochro... [more]
D8LCJ4_ECTSI1.470e-1653.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2WVX8_9STRA6.110e-1637.01Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DKM5_EMIHU6.260e-1638.21YHYH domain-containing protein n=1 Tax=Emiliania h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14565contigH-elongata_contig14565:6322..7013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue3e-35
Seed eggNOG ortholog2880.D8LCJ5
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14565.3121.1prot_H-elongata_contig14565.3121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14565 6322..6995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.80768-CDS-H-elongata_contig14565:6321..63691622929866.80768-CDS-H-elongata_contig14565:6321..6369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6322..6369 -
1691679187.9553673-CDS-H-elongata_contig14565:6321..63691691679187.9553673-CDS-H-elongata_contig14565:6321..6369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6322..6369 -
1622929866.8204224-CDS-H-elongata_contig14565:6602..68041622929866.8204224-CDS-H-elongata_contig14565:6602..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6603..6804 -
1691679187.9657936-CDS-H-elongata_contig14565:6602..68041691679187.9657936-CDS-H-elongata_contig14565:6602..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6603..6804 -
1622929866.8320234-CDS-H-elongata_contig14565:6909..69951622929866.8320234-CDS-H-elongata_contig14565:6909..6995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6910..6995 -
1691679187.9738681-CDS-H-elongata_contig14565:6909..69951691679187.9738681-CDS-H-elongata_contig14565:6909..6995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14565 6910..6995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.8433757-UTR-H-elongata_contig14565:6995..70131622929866.8433757-UTR-H-elongata_contig14565:6995..7013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14565 6996..7013 -
1691679187.9821022-UTR-H-elongata_contig14565:6995..70131691679187.9821022-UTR-H-elongata_contig14565:6995..7013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14565 6996..7013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14565.3121.1

>prot_H-elongata_contig14565.3121.1 ID=prot_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDT
LDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFP
MYGHLGPDGIEM
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mRNA from alignment at H-elongata_contig14565:6322..7013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14565.3121.1 ID=mRNA_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=692bp|location=Sequence derived from alignment at H-elongata_contig14565:6322..7013- (Himanthalia elongata Himel1 dioecious)
AGCATCCCCGCGTACCCGATGATGATCGGCGACAATGGAACGACCGACCT CAGCGAAACGAATGGGCAGGTCGCAATCCTGGTGAACGGCGTCGCGATGT TCAGGTGAGTCACTCTCTCCCCTCGCTGTTATAGTGCCACTGCCAGTCTG CTCTCTTCGAGGTACTTTCTTAACCCATTTTTCCTTTTTAACATCGTGTT ATAATACAGCGCTTGGGCGACCGAGCCTGCCGTAGACTACGAGTCGACCG CCTTCTATCTGGAGGGAGACACCCTAGACGCCTGCGGGGGCCACTCCACC ACAGAGGGTTGGTACCACTACCACGGAACGCCCGGGTGTCTCGAGGAGCA GGTCATGATGGGAGAAGGCCTCACCTTGTCGGACCACTCTCCCTTCCTAG GCTGGTCCTACGTGAGTCGTCACCCAAGTTCGTTCCAGACAGCATGTAGG CGTTAAGGAGGCGGTGGGAACGTGTGTTGTAGTTGTTGCTATCCTCACAA AAGCCTCGCATGAGCGTGTGTGTGTTTGTGTGTACTCCCTTGCTCCAGCT TTGATGCAGCCGCCATAATATACGCGATGAACATTCGCCGCGCTTTCTGT CTCTTGTGTGTATTTCTCTCTCTTTCTCTCTCTTAATTTATCAGGATGGT TTCCCGATGTACGGGCACCTCGGGCCCGATGGGATCGAGATG
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Coding sequence (CDS) from alignment at H-elongata_contig14565:6322..7013-

>mRNA_H-elongata_contig14565.3121.1 ID=mRNA_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig14565:6322..7013- (Himanthalia elongata Himel1 dioecious)
ATGATGATCGGCGACAATGGAACGACCGACCTCAGCGAAACGAATGGGCA
GGTCGCAATCCTGGTGAACGGCGTCGCGATGTTCAGATGATGATCGGCGA
CAATGGAACGACCGACCTCAGCGAAACGAATGGGCAGGTCGCAATCCTGG
TGAACGGCGTCGCGATGTTCAGCGCTTGGGCGACCGAGCCTGCCGTAGAC
TACGAGTCGACCGCCTTCTATCTGGAGGGAGACACCCTAGACGCCTGCGG
GGGCCACTCCACCACAGAGGGTTGGTACCACTACCACGGAACGCCCGGGT
GTCTCGAGGAGCAGGTCATGATGGGAGAAGGCCTCACCTTGTCGGACCAC
TCTCCCTTCCTAGGCTGGTCCTACCGCTTGGGCGACCGAGCCTGCCGTAG
ACTACGAGTCGACCGCCTTCTATCTGGAGGGAGACACCCTAGACGCCTGC
GGGGGCCACTCCACCACAGAGGGTTGGTACCACTACCACGGAACGCCCGG
GTGTCTCGAGGAGCAGGTCATGATGGGAGAAGGCCTCACCTTGTCGGACC
ACTCTCCCTTCCTAGGCTGGTCCTACGATGGTTTCCCGATGTACGGGCAC
CTCGGGCCCGATGGGATCGAGATGGATGGTTTCCCGATGTACGGGCACCT
CGGGCCCGATGGGATCGAGATG
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