mRNA_H-elongata_contig14565.3121.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.620e-47 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
S+PAYPM+I GTTDLS G + ++ NGV+MFSAWA + V+YE TAFYLE DT D CGGH+T G YHYHGT GCL+EQ G +HSP LGWSYDGFP+YG LGP G+EM
Sbjct: 106 SVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEM 219
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI) HSP 1 Score: 164 bits (415), Expect = 4.050e-46 Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
SIPAYPM++ D GTTDLS G + ++ NGV+M+SAWA + +YE TAFYLE DTLD CGGH+T G YHYH T GCL+EQ G +HSP LGWSYDGFP+YG LGP G+EM
Sbjct: 121 SIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEM 234
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.220e-32 Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 76 ILVNGVAMFSAWATE-PAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
+++NGVA++S++A + A Y + A L GDT D CGG +T +G YHYH PGCL+EQ M + LT DHSP LGW+YDGFP+YG LGP G+EM
Sbjct: 1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM 94
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU) HSP 1 Score: 106 bits (265), Expect = 2.070e-24 Identity = 59/139 (42.45%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 1 SIPAYPMMIGDN------GTTDLSETNGQVAILVNGVAMFSAWA------------TEPAVDYESTAFYLEGDTLDACGGHST--TEGW-YHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
SIPAYP G + TDLSE G V + +NGVA+++AWA + + S A EG+T D CGGHS+ + G+ YHYH P CL Q+ G + HSP +GW YDGFP+YG GPDG++M
Sbjct: 403 SIPAYPFFNGASYEDALAAATDLSEQGGDVGLTLNGVAIYTAWAGSYDXXXXXXIDEDDVMSETSNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQL----GQYIGQHSPQVGWMYDGFPVYGPFGPDGVQM 537
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A6H5LAI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAI5_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.030e-23 Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQ 246
S PAYP + D +TDLSET G + ILV+GV M SA+A P D++STA E +T DAC HSTTEG YH HGTPGC EQ
Sbjct: 174 STPAYPQLFADGYSTDLSETIGLIGILVDGVPMCSAFAGTPVTDWDSTAMAAEYNTFDACASHSTTEGHYHTHGTPGCFMEQ 255
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A7S2G312_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G312_9EUKA) HSP 1 Score: 95.9 bits (237), Expect = 6.690e-22 Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWA-TEPAVDYESTAFYLEGDTLDACGGHS--TTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
+IP P T+ LS G V I +G ++SA+A + Y ++A YLEG+T D CGGHS TT YHYH P CL Q+ G+ +HSP +GW DGFP+YG LGP+G M
Sbjct: 64 TIPVSPQYSASQETS-LSAVGGAVGIARDGTHIYSAFAGSYTLTGYSTSAAYLEGNTFDECGGHSSSTTTPSYHYHVVPSCLLRQL----GMASGEHSPQVGWMADGFPVYGPLGPNGAVM 179
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A0M0JHL1_9EUKA (HintN domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHL1_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 1.440e-19 Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 43 TDLSETNGQVAILVNGVAMFSAWA--TEPAVDYESTAFYLEGDTLDACGGHS--TTEGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
T L+ V + +G ++S +A + P + ++A YLEG+T D CGGHS TT YHYH P CL +Q+ G+T HSP +GW DGFP+YG LGP+G+ M
Sbjct: 39 TSLTALGAIVGVAYDGGMIYSPFAGPSYPLTGWTTSAAYLEGNTFDQCGGHSSSTTSPSYHYHVAPSCLLKQL----GMTAGQHSPQIGWMADGFPLYGPLGPNGVVM 142
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: D8LCJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ4_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.470e-16 Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 SIPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTLDACGGHSTTEGWYHYHGT 225
SI AYPMM DNGT DLS +G + ++ NGV+ DY TAFYLE D+ D CGGH+T G+YHYHGT
Sbjct: 78 SILAYPMMSADNGTKDLSSASGTICMMRNGVSHVQ--------DYFDTAFYLEADSFDPCGGHATPNGFYHYHGT 144
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 6.110e-16 Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query: 4 IPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATE------PAVDY-ESTAFYLEGDTLDACGGHSTTEGWYHYHGTPGCLEEQVMMGE--GLTLSD-HSPFLGWSYDGFPMYGHLGPDGIEM 354
+PA P + +L + G +A +NGV +S P +D ++TA ++ + D C GHST G YHYH P CL Q G T+++ HSP +GW+ DGFP+YG LGP G+E+
Sbjct: 104 VPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWI---SFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEI 227
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU) HSP 1 Score: 81.6 bits (200), Expect = 6.260e-16 Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 4 IPAYPMMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDY-ESTAFYLEGDTLDACGGHSTT-----EGWYHYHGTPGCLEEQVMMGEGLTLSDHSPFLGWSYDGFPMYGHLGPDGIEM 354
IPAYP++ +N E +A+ +NGV ++S D + E + D CGGH+ G YHYH P CLE Q+ G HSP +GWS DGFP+YG LGP G+ M
Sbjct: 78 IPAYPVLATENDAWPECEKE-TIAMALNGVPIYSGAVGSGDCDILDLDDANAEWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTM 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14565.3121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14565.3121.1 >prot_H-elongata_contig14565.3121.1 ID=prot_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MMIGDNGTTDLSETNGQVAILVNGVAMFSAWATEPAVDYESTAFYLEGDTback to top mRNA from alignment at H-elongata_contig14565:6322..7013- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14565.3121.1 ID=mRNA_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=692bp|location=Sequence derived from alignment at H-elongata_contig14565:6322..7013- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14565:6322..7013- >mRNA_H-elongata_contig14565.3121.1 ID=mRNA_H-elongata_contig14565.3121.1|Name=mRNA_H-elongata_contig14565.3121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig14565:6322..7013- (Himanthalia elongata Himel1 dioecious)back to top |