mRNA_H-elongata_contig144793.3076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144793.3076.1
Unique NamemRNA_H-elongata_contig144793.3076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.370e-29
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +ERL  +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+P GTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:   30 LARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 158
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.080e-28
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +ERL  +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:  364 LARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.130e-28
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +ERL  +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:  364 LARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.140e-28
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +ERL  +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:  212 LARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 340
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.500e-27
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +ERL  +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL  LLRT+ PSIT
Sbjct:   30 LARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSIT 158
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 8.960e-27
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:   16 MAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            M A +T+T W +ER   +GI L    S+ L   G     LT +++  +  IGL+V   GM VVG+PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:    1 MQATSTVTNWIQERFSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 125
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.870e-26
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  + AIAT+T W ++ L  +GI L    S+ L   G     LT +++  +   GL+V   GM +VGVPVGTE F+R FV     G PAEL+R L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:   63 LARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 191
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.070e-26
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  M AI+T+T W +E    +GI L    S+ L   G     LT +++  +  IGL+V   GM VV +PVGTE F+R+FV K   G PAEL+  L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:   30 LARNMQAISTVTNWIQESRSQKGIELNLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVAIPVGTEEFQRNFVPKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 158
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.050e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  + AIAT+T W ++ L  +GI L    S+ L   G     LT +++  +   GL+V   GM +VGVPVGTE F+R FV     G PAEL+R L  +++ Q  +Q+LRLS V RL HLLRT+ PSIT
Sbjct:  364 LARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSIT 492
[Close]
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.990e-24
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:    4 LSLEMAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDNIGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQGRFQILRLSAVSRLSHLLRTVPPSIT 390
            L+  + AIAT+T W ++ L  + I L    S+ L   G     LT +++  +   GL+V   GM +VGVPVGTE F+R FV     G PAEL+R L  +++ Q  +Q+LRLS V RL HLLRT  PSIT
Sbjct:   30 LARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSIT 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144793.3076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JLD7_9PHAE2.370e-2946.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCM0_9PHAE2.080e-2847.29Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE2.130e-2847.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE2.140e-2847.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKJ7_9PHAE2.500e-2746.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W9_9PHAE8.960e-2746.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K541_9PHAE3.870e-2644.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI2_9PHAE7.070e-2644.96Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KGJ4_9PHAE6.050e-2544.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JL76_9PHAE3.990e-2444.19Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144793contigH-elongata_contig144793:1171..1560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.4247582-UTR-H-elongata_contig144793:1170..11851622929859.4247582-UTR-H-elongata_contig144793:1170..1185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144793 1171..1185 +
1691679186.0736187-UTR-H-elongata_contig144793:1170..11851691679186.0736187-UTR-H-elongata_contig144793:1170..1185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144793 1171..1185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.487598-CDS-H-elongata_contig144793:1185..15601622929859.487598-CDS-H-elongata_contig144793:1185..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144793 1186..1560 +
1691679186.081809-CDS-H-elongata_contig144793:1185..15601691679186.081809-CDS-H-elongata_contig144793:1185..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144793 1186..1560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144793.3076.1prot_H-elongata_contig144793.3076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144793 1186..1560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144793.3076.1

>prot_H-elongata_contig144793.3076.1 ID=prot_H-elongata_contig144793.3076.1|Name=mRNA_H-elongata_contig144793.3076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MAAIATLTEWSKERLGVEGISLKRRNSQALLANGATRKELTEEQRIAVDN
IGLTVVGQGMRVVGVPVGTERFKRDFVDKAVNGKPAELVRALVPMNNTQG
RFQILRLSAVSRLSHLLRTVPPSIT
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mRNA from alignment at H-elongata_contig144793:1171..1560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144793.3076.1 ID=mRNA_H-elongata_contig144793.3076.1|Name=mRNA_H-elongata_contig144793.3076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig144793:1171..1560+ (Himanthalia elongata Himel1 dioecious)
GAGCTCTCTCTCGAAATGGCAGCGATAGCAACATTAACTGAATGGTCAAA
AGAGCGACTGGGGGTAGAAGGCATTTCTTTAAAGCGAAGAAATTCACAGG
CGCTGTTGGCAAATGGAGCAACACGAAAAGAACTCACGGAAGAGCAACGC
ATAGCGGTGGACAATATAGGGCTCACGGTGGTTGGACAGGGAATGCGAGT
TGTAGGAGTACCGGTGGGGACAGAACGGTTTAAGCGGGATTTTGTTGATA
AAGCAGTGAACGGAAAACCAGCCGAGCTTGTAAGAGCGCTCGTCCCGATG
AACAATACTCAGGGGAGATTTCAGATTCTGAGACTGTCAGCGGTTTCCCG
TCTGTCACACCTCCTCCGCACAGTCCCACCCTCAATCACG
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Coding sequence (CDS) from alignment at H-elongata_contig144793:1171..1560+

>mRNA_H-elongata_contig144793.3076.1 ID=mRNA_H-elongata_contig144793.3076.1|Name=mRNA_H-elongata_contig144793.3076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig144793:1171..1560+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGATAGCAACATTAACTGAATGGTCAAAAGAGCGACTGGGGGT
AGAAGGCATTTCTTTAAAGCGAAGAAATTCACAGGCGCTGTTGGCAAATG
GAGCAACACGAAAAGAACTCACGGAAGAGCAACGCATAGCGGTGGACAAT
ATAGGGCTCACGGTGGTTGGACAGGGAATGCGAGTTGTAGGAGTACCGGT
GGGGACAGAACGGTTTAAGCGGGATTTTGTTGATAAAGCAGTGAACGGAA
AACCAGCCGAGCTTGTAAGAGCGCTCGTCCCGATGAACAATACTCAGGGG
AGATTTCAGATTCTGAGACTGTCAGCGGTTTCCCGTCTGTCACACCTCCT
CCGCACAGTCCCACCCTCAATCACGATGGCAGCGATAGCAACATTAACTG
AATGGTCAAAAGAGCGACTGGGGGTAGAAGGCATTTCTTTAAAGCGAAGA
AATTCACAGGCGCTGTTGGCAAATGGAGCAACACGAAAAGAACTCACGGA
AGAGCAACGCATAGCGGTGGACAATATAGGGCTCACGGTGGTTGGACAGG
GAATGCGAGTTGTAGGAGTACCGGTGGGGACAGAACGGTTTAAGCGGGAT
TTTGTTGATAAAGCAGTGAACGGAAAACCAGCCGAGCTTGTAAGAGCGCT
CGTCCCGATGAACAATACTCAGGGGAGATTTCAGATTCTGAGACTGTCAG
CGGTTTCCCGTCTGTCACACCTCCTCCGCACAGTCCCACCCTCAATCACG
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