mRNA_H-elongata_contig144546.3055.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: D7FQ27_ECTSI (Chorismate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ27_ECTSI) HSP 1 Score: 231 bits (588), Expect = 3.690e-72 Identity = 114/162 (70.37%), Postives = 134/162 (82.72%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDD-HVTLESELG----LQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPSLEGLHDL 471
RY+SE+VP++C PGDD+QHGS+VVCDV LQALSRRVHLGKFVAESKFQEDS YQ+LCRAGD RGVL L NK VE+KVL+RAF+KASTYG DI+D V+ E G + +NFKV+P IV IY++ VIPLTKDVEI+YLFQRTGYPCPSLEG+HD+
Sbjct: 235 RYVSEIVPMICEPGDDDQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSKTYQDLCRAGDARGVLELLTNKAVEEKVLKRAFMKASTYGSDINDVPVSTEDAKGGDGAAKAEQNFKVNPQFIVDIYRDTVIPLTKDVEILYLFQRTGYPCPSLEGIHDI 396
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A836CAA2_9STRA (Chorismate mutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA2_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.630e-57 Identity = 94/156 (60.26%), Postives = 113/156 (72.44%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPSLEGLHD 468
RY++EVVP +C GDDEQHGS+V+CD+ LQALSRRVH GKFVAESKFQED Y+ LC G+ RGV L NK VEKKV++RA KA+ Y ++I T E G + FKV P I IY++ +IPLTKDVEI+YLFQRTGY CPSL G+HD
Sbjct: 77 RYVAEVVPAICGAGDDEQHGSSVLCDINALQALSRRVHFGKFVAESKFQEDGDLYRNLCSEGNARGVNELLTNKAVEKKVIERALNKATAYAQEI----TWEGAAGSR----FKVRPEAISAIYKDIIIPLTKDVEILYLFQRTGYTCPSLAGIHD 224
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A6U1P8R8_9STRA (Chorismate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P8R8_9STRA) HSP 1 Score: 170 bits (430), Expect = 9.220e-49 Identity = 83/156 (53.21%), Postives = 107/156 (68.59%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPSLEGLHD 468
RY+ EVVP +C GDDEQ+GS + D+ LQALSRR+H G FVAESKF ++ +Y+ L RAGD +GV L N VE+ VLQRAF KASTYG+DI + G E +KV+P I +Y+ +IPLTK+VE++YLF+R G PCP L G+HD
Sbjct: 220 RYVDEVVPRICSAGDDEQYGSTALADITALQALSRRIHYGLFVAESKFLDNPSQYEALVRAGDAKGVYDLLTNASVEELVLQRAFRKASTYGQDI-------TATGDPETTEYKVEPRIIRGLYKSVIIPLTKEVEVLYLFERVGCPCPDLSGIHD 368
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A4D9CWZ2_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWZ2_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.640e-46 Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 1
Query: 4 YISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPS 450
YI+EVVP VC GDDEQHGS+V+ D+ +LQALSRR+HLGKFVAE+KFQED KY+ L A DV GV++ L N VE +VL RA +KASTYG+DI + E KV+P I IY++ +IPLTKDVE++YLF+R G P+
Sbjct: 116 YINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEDEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDI-----------MGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPA 253
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: W7U1H9_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1H9_9STRA) HSP 1 Score: 160 bits (404), Expect = 3.000e-44 Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 1
Query: 4 YISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPS 450
YI+EVVP VC GDDEQHGS+V+ D+ +LQALSRR+HLGKFVAE+KFQE+ KY+ L A DV GV++ L N VE +VL RA +KASTYG+DI + E KV+P I IY++ +IPLTKDVE++YLF+R G P+
Sbjct: 282 YINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDI-----------MGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPA 419
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A7S2VZ80_9STRA (Chorismate mutase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ80_9STRA) HSP 1 Score: 150 bits (380), Expect = 6.870e-41 Identity = 83/179 (46.37%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTL------------------------ESELG--LQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPSLEG 459
+Y S ++P + PGDDEQHGSAVVCD+AVLQALSRRVH GKFVAESK++ D YQ+L + D GV+ L N PVE+KVLQRA +KA+TYGR+ ++ + E+ +G + + KV+P I IY++F+IPLTKD+E+ YLF R G P G
Sbjct: 202 KYTSWILPKMSQPGDDEQHGSAVVCDIAVLQALSRRVHYGKFVAESKYRSDPKAYQQLVQDNDADGVMKLLTNAPVEEKVLQRAKLKAATYGREPLSNIAIPNLECNDTASIVAXXXXXXXXXXVEALVGGDFSQKKRGKVNPTVIEAIYRDFIIPLTKDIEVAYLFLRCGKQPPKEYG 380
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A0G4FZ06_9ALVE (Chorismate mutase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FZ06_9ALVE) HSP 1 Score: 149 bits (375), Expect = 7.030e-39 Identity = 74/154 (48.05%), Postives = 103/154 (66.88%), Query Frame = 1
Query: 4 YISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPSLEGLH 465
Y + ++PL+C GDDE++GSA CD+ LQALS+RVH GKFVAE+KFQED+ Y++L D G+L +L N+ VE+++L R KASTYGRD+ +S L +FKVDP IV Y++F+IP+TK+VE+ YL +R G + G H
Sbjct: 136 YTNVLLPLICRSGDDEEYGSAATCDITCLQALSKRVHYGKFVAEAKFQEDTETYKQLIAGKDADGILEKLTNRAVEERLLDRVRQKASTYGRDVGMTCATDSTL------HFKVDPEVIVAAYRDFIIPVTKEVEVDYLLERCGPLKVAFVGEH 283
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A7S3V864_9STRA (Chorismate mutase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V864_9STRA) HSP 1 Score: 143 bits (361), Expect = 2.530e-38 Identity = 80/175 (45.71%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRD-IDDHVTLESELGLQEHRNF------------------------KVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTGYPCPS 450
+Y+ VVP + GDDEQHGS V+ D+A+LQALS+R H GKFVAESK++ D +YQ L AGD GV+ L N VE +VL+RA +KASTYGR+ + + +E + + NF KVDP + IY++FVIPLTKDVE+ YLF+R G PS
Sbjct: 191 KYLKWVVPSISASGDDEQHGSTVLADIALLQALSKRAHFGKFVAESKYRSDPEEYQRLVDAGDADGVMELLTNAVVEARVLRRARIKASTYGREPLMTQLPIEKADQISDSANFVAAAAASAVASAFQMIDQSDDFQGKVDPAIVQDIYEKFVIPLTKDVEVDYLFRRCGRDPPS 365
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A7S2SIA4_9STRA (Chorismate mutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIA4_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.920e-37 Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 1
Query: 4 YISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRDIDDHVTLESELGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQRTG 435
YI +VVP +C PGDD+Q+GS+ +CD+A LQALSRR+H+GKFVAESKFQ + + +L A D+ G+ L N+ VE++V RA +KA T+G+D ++++G FKV PH + ++Y++ +IPLTK V++ YLF R G
Sbjct: 144 YIDKVVPSICDPGDDQQYGSSALCDIACLQALSRRIHIGKFVAESKFQHEPELFTKLVEARDIEGINRLLTNELVEERVCHRARLKAVTFGQDAFS----DTDVG------FKVAPHKLFELYRDMIIPLTKQVQVRYLFDRVG 277
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Match: A0A1E7FY19_9STRA (Chorismate mutase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY19_9STRA) HSP 1 Score: 138 bits (347), Expect = 3.470e-37 Identity = 79/153 (51.63%), Postives = 99/153 (64.71%), Query Frame = 1
Query: 1 RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEDSGKYQELCRAGDVRGVLAELENKPVEKKVLQRAFVKASTYGRD--IDDHVTLESE--------LGLQEHRNFKVDPHGIVKIYQEFVIPLTKDVEIMYLFQR 429
+YI +VVP +C GDDEQHGS+V+ DVAVLQALS+RVH GKFVAESK+ D YQ L A D GV+ L N+ VE KVL+RA +KA+TYG D + D L E LG + KV + IY++ +IPLTKDVE+ YLF+R
Sbjct: 138 KYIEDVVPAICAKGDDEQHGSSVLNDVAVLQALSKRVHYGKFVAESKYLGDPDAYQALVDANDAEGVMKLLTNEAVELKVLRRARLKAATYGTDPLLADLPPLYGEQKGIPSIALGDDGSEDNKVCALTVEIIYRDLIIPLTKDVEVAYLFRR 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144546.3055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig144546.3055.1 >prot_H-elongata_contig144546.3055.1 ID=prot_H-elongata_contig144546.3055.1|Name=mRNA_H-elongata_contig144546.3055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp RYISEVVPLVCLPGDDEQHGSAVVCDVAVLQALSRRVHLGKFVAESKFQEback to top mRNA from alignment at H-elongata_contig144546:294..1252+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig144546.3055.1 ID=mRNA_H-elongata_contig144546.3055.1|Name=mRNA_H-elongata_contig144546.3055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig144546:294..1252+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig144546:294..1252+ >mRNA_H-elongata_contig144546.3055.1 ID=mRNA_H-elongata_contig144546.3055.1|Name=mRNA_H-elongata_contig144546.3055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig144546:294..1252+ (Himanthalia elongata Himel1 dioecious)back to top |