mRNA_H-elongata_contig144400.3048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144400.3048.1
Unique NamemRNA_H-elongata_contig144400.3048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144400.3048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144400contigH-elongata_contig144400:2..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144400.3048.1prot_H-elongata_contig144400.3048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144400 2..1036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.4162853-CDS-H-elongata_contig144400:1..3561622929856.4162853-CDS-H-elongata_contig144400:1..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 2..356 +
1691679185.0123372-CDS-H-elongata_contig144400:1..3561691679185.0123372-CDS-H-elongata_contig144400:1..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 2..356 +
1622929856.4316323-CDS-H-elongata_contig144400:590..7351622929856.4316323-CDS-H-elongata_contig144400:590..735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 591..735 +
1691679185.0249429-CDS-H-elongata_contig144400:590..7351691679185.0249429-CDS-H-elongata_contig144400:590..735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 591..735 +
1622929856.448457-CDS-H-elongata_contig144400:777..10361622929856.448457-CDS-H-elongata_contig144400:777..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 778..1036 +
1691679185.0338163-CDS-H-elongata_contig144400:777..10361691679185.0338163-CDS-H-elongata_contig144400:777..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144400 778..1036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144400.3048.1

>prot_H-elongata_contig144400.3048.1 ID=prot_H-elongata_contig144400.3048.1|Name=mRNA_H-elongata_contig144400.3048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
ITGGLDRNTTLDGGNTTRVFRVANASLQLNDVNIKNGYATFGGAITATDS
VLTLNHVNFVHNTAYEKSGGAVFAYGGSSISFSGETAFLNNSSNYDGGAL
YVVNSDISWEAESSFSENRAHFLGNTATIGGGGAILVGDSSIVKWSGETS
LTSNTCGSQGGALSSRASSLTTEGTLIFDNNTSGLNGGGIAFLGGMSASF
SSRNITFSDNKAGGSGGGVFISAPGEGPTFINATFLSNVAEKGGGVFING
CGT
back to top

mRNA from alignment at H-elongata_contig144400:2..1036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144400.3048.1 ID=mRNA_H-elongata_contig144400.3048.1|Name=mRNA_H-elongata_contig144400.3048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig144400:2..1036+ (Himanthalia elongata Himel1 dioecious)
ATAACTGGCGGCCTAGATCGTAACACTACCCTAGACGGAGGAAATACGAC
ACGTGTGTTTAGAGTCGCAAACGCCTCCCTGCAGCTAAACGACGTGAACA
TTAAAAATGGCTACGCCACGTTTGGCGGGGCGATCACGGCGACAGATTCC
GTTCTGACTCTGAACCATGTGAACTTTGTTCATAACACGGCGTACGAAAA
AAGTGGTGGCGCCGTTTTCGCCTACGGGGGATCCAGTATTTCCTTCAGTG
GAGAAACTGCCTTTTTGAACAACAGCAGTAATTACGATGGTGGAGCCCTT
TACGTGGTAAACAGCGACATCTCTTGGGAAGCTGAGTCCTCTTTCTCGGA
GAATAGTGCAACTAACTCTGGCGGTGCCCTATGTGCAGTGTCCGGGAGCA
CAGTATCGTGGGCGGCAAGTGCTGCCTTTATCGGAAACCAAGCCAACAAC
GATGCAGGGGGAGCCTTGTATATTGAAGGTGGTAGTAGCGCGTTCTGGAG
CGCTGACGCAAGCTTTGTCTCCAACGACGCTGAAAATGATGGGGGCGCTG
TTTTTATAAATAGGGAATCTAATGCCACCTGGAATAAAGGAGCTCATTTT
CTTGGAAACACTGCTACCATTGGAGGGGGTGGAGCGATCCTCGTCGGAGA
CTCTTCCATTGTGAAATGGAGCGGGGAAACGTCACTGACATCAAACACCT
GTGGTTCACAAGGTGGCGCTTTGTCGTCCAGAGCGTTCGACATGAGCACA
TCCACTAGTTCGGGCAACAATCAAAGATCTTCCCTTACCACCGAAGGCAC
CCTCATTTTCGACAACAACACTTCGGGGTTGAACGGGGGAGGGATTGCAT
TTCTAGGCGGGATGTCCGCATCATTTTCATCCCGAAATATTACCTTCTCG
GATAATAAAGCAGGGGGTTCTGGAGGCGGTGTTTTTATCTCCGCCCCAGG
TGAAGGTCCTACTTTTATCAATGCAACGTTTTTGTCCAACGTCGCTGAAA
AAGGAGGCGGCGTGTTCATCAATGGATGTGGGACA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144400:2..1036+

>mRNA_H-elongata_contig144400.3048.1 ID=mRNA_H-elongata_contig144400.3048.1|Name=mRNA_H-elongata_contig144400.3048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig144400:2..1036+ (Himanthalia elongata Himel1 dioecious)
ATAACTGGCGGCCTAGATCGTAACACTACCCTAGACGGAGGAAATACGAC
ACGTGTGTTTAGAGTCGCAAACGCCTCCCTGCAGCTAAACGACGTGAACA
TTAAAAATGGCTACGCCACGTTTGGCGGGGCGATCACGGCGACAGATTCC
GTTCTGACTCTGAACCATGTGAACTTTGTTCATAACACGGCGTACGAAAA
AAGTGGTGGCGCCGTTTTCGCCTACGGGGGATCCAGTATTTCCTTCAGTG
GAGAAACTGCCTTTTTGAACAACAGCAGTAATTACGATGGTGGAGCCCTT
TACGTGGTAAACAGCGACATCTCTTGGGAAGCTGAGTCCTCTTTCTCGGA
GAATAATAACTGGCGGCCTAGATCGTAACACTACCCTAGACGGAGGAAAT
ACGACACGTGTGTTTAGAGTCGCAAACGCCTCCCTGCAGCTAAACGACGT
GAACATTAAAAATGGCTACGCCACGTTTGGCGGGGCGATCACGGCGACAG
ATTCCGTTCTGACTCTGAACCATGTGAACTTTGTTCATAACACGGCGTAC
GAAAAAAGTGGTGGCGCCGTTTTCGCCTACGGGGGATCCAGTATTTCCTT
CAGTGGAGAAACTGCCTTTTTGAACAACAGCAGTAATTACGATGGTGGAG
CCCTTTACGTGGTAAACAGCGACATCTCTTGGGAAGCTGAGTCCTCTTTC
TCGGAGAATAGAGCTCATTTTCTTGGAAACACTGCTACCATTGGAGGGGG
TGGAGCGATCCTCGTCGGAGACTCTTCCATTGTGAAATGGAGCGGGGAAA
CGTCACTGACATCAAACACCTGTGGTTCACAAGGTGGCGCTTTGTCGTCC
AGAGCGAGCTCATTTTCTTGGAAACACTGCTACCATTGGAGGGGGTGGAG
CGATCCTCGTCGGAGACTCTTCCATTGTGAAATGGAGCGGGGAAACGTCA
CTGACATCAAACACCTGTGGTTCACAAGGTGGCGCTTTGTCGTCCAGAGC
ATCTTCCCTTACCACCGAAGGCACCCTCATTTTCGACAACAACACTTCGG
GGTTGAACGGGGGAGGGATTGCATTTCTAGGCGGGATGTCCGCATCATTT
TCATCCCGAAATATTACCTTCTCGGATAATAAAGCAGGGGGTTCTGGAGG
CGGTGTTTTTATCTCCGCCCCAGGTGAAGGTCCTACTTTTATCAATGCAA
CGTTTTTGTCCAACGTCGCTGAAAAAGGAGGCGGCGTGTTCATCAATGGA
TGTGGGACAATCTTCCCTTACCACCGAAGGCACCCTCATTTTCGACAACA
ACACTTCGGGGTTGAACGGGGGAGGGATTGCATTTCTAGGCGGGATGTCC
GCATCATTTTCATCCCGAAATATTACCTTCTCGGATAATAAAGCAGGGGG
TTCTGGAGGCGGTGTTTTTATCTCCGCCCCAGGTGAAGGTCCTACTTTTA
TCAATGCAACGTTTTTGTCCAACGTCGCTGAAAAAGGAGGCGGCGTGTTC
ATCAATGGATGTGGGACA
back to top