prot_H-elongata_contig144400.3048.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig144400.3048.1
Unique Nameprot_H-elongata_contig144400.3048.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length253
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144400.3048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 204..220
e-value: 0.054
score: 14.0
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 83..104
e-value: 6.4E-4
score: 17.5
coord: 173..192
e-value: 0.0022
score: 15.8
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 7..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144400contigH-elongata_contig144400:2..1036 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144400.3048.1mRNA_H-elongata_contig144400.3048.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig144400 2..1036 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig144400.3048.1 ID=prot_H-elongata_contig144400.3048.1|Name=mRNA_H-elongata_contig144400.3048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
ITGGLDRNTTLDGGNTTRVFRVANASLQLNDVNIKNGYATFGGAITATDS
VLTLNHVNFVHNTAYEKSGGAVFAYGGSSISFSGETAFLNNSSNYDGGAL
YVVNSDISWEAESSFSENRAHFLGNTATIGGGGAILVGDSSIVKWSGETS
LTSNTCGSQGGALSSRASSLTTEGTLIFDNNTSGLNGGGIAFLGGMSASF
SSRNITFSDNKAGGSGGGVFISAPGEGPTFINATFLSNVAEKGGGVFING
CGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence