mRNA_H-elongata_contig143354.2988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143354.2988.1
Unique NamemRNA_H-elongata_contig143354.2988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.930e-103
Identity = 172/199 (86.43%), Postives = 179/199 (89.95%), Query Frame = 1
Query:   34 MVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLE-EGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVT 627
            MVHAIRPSA VPEKKDCVTTMRTVK  MMEKVSRLI+GE VCITSDGWTSCANDTYMSLT TLIT AWKLVTLSVDCSKSEGTTTGDALAAGIKA +AKHGL GKVTAV TDCEPSMVKMGRLL  +  V T IGCCN+RLEST+SIVFNGP VKKVM LARGLVT+Y TSSQAA  LK+FVKTYLGVDNKRVIQDVVT
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 5.830e-77
Identity = 132/284 (46.48%), Postives = 187/284 (65.85%), Query Frame = 1
Query:    7 MLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
            M+E++ F EMV  ++  A VP K+  +  +R +K  + ++V   + GEHV +TSDGWTS +NDTYM  T T I+  + LV L V+C K  G TTG+ L   +KA +A++GL  +  A  TDCEPSMVK GRLLEE +  TH+GC  HRLES TS  F GPGV K +ALAR +VT+Y  SSQA+  L++ ++  + V+ K+V+QDV TRW ST + + RL+ L+ PI +H+  D + PLL   DW VL+++ P  +PF  +Q   E+ K VT + V+P+I DLR+
Sbjct:    1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRD 283          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 6.990e-69
Identity = 132/275 (48.00%), Postives = 175/275 (63.64%), Query Frame = 1
Query:   34 MVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLE-EGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
            MV A+   A VP +++ ++ MR VK A+  +V+ ++  E V IT+DGWTS  N++YMSLTV  I   WKL  LS+DC+K  GTTTG+ LAA +   + +H L G+V A +TDCEPSM+K GRLLE +G   +HIGC NHR+ESTTS VFNG  +   + LAR LV +Y  SSQ A  L +     L ++   V+QDV TRW ST +MV RL+ L   I  H++ D + PLLS  DW VL LI P L PF   Q  LE  +YVTG+  +  + +LR
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCG-ILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELR 273          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 4.980e-68
Identity = 131/284 (46.13%), Postives = 177/284 (62.32%), Query Frame = 1
Query:   10 LEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDV-CTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
            +E   F  +V  +   A  P ++  V  MR +K  +  +V+ ++  E+V IT+DGWTS +N++YMSLTV  I   W+L  LS++C+K  G+T G+ LA  I + + +HGL G+VTA +TDCEPSMVK GRLLE G     HIGC NHR+ESTTS VFNG  +   +A AR +V +Y  SSQ +  L  F+   L +    V+QDV TRW S+ +M+ERL+ L   I  H++ D + P+LS  DW VL LI P L PF   Q  LE  KYVTG+  VP I +LRN
Sbjct:   29 VEYPEFHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIG-ILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRN 310          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.930e-64
Identity = 120/238 (50.42%), Postives = 156/238 (65.55%), Query Frame = 1
Query:  145 GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
            GEHV +TSDGWT  +NDTYMS T T I+  + LV L ++C K    T G+ L   +KA +A++GL G+  A+ TDCE SMVK GRLLEE +  TH+GC  HRLES TS  F GPGV K +ALARG+VT+YT SSQA+  L++ V   + V+ K V+QDV TRW ST   + RL+ L+ PI +H+  D   PLL   DW VL+L+   L+PF   Q  LE+ K VT   V P+I DL++
Sbjct:    3 GEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQD 239          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 5.940e-51
Identity = 102/226 (45.13%), Postives = 136/226 (60.18%), Query Frame = 1
Query:  181 SCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
            S +NDTYM+ T T I+  + LV L ++  K  G TTG+ L   +KA +A++GL G+  A  TDCEP MVK GRLLEE +  +H+GC  HR ES TS  F GPGV K +AL RG+VT+YT SSQA+  L++     + V+ K+V+QDV TRW ST   +                D + PLL+  DW VL+L+ P L PF   Q  LE+ K VT + V  +I DLR+
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCD-IVQVERKKVVQDVETRWWSTPREI----------------DSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRD 211          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A671UN94_SPAAU (DUF659 domain-containing protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UN94_SPAAU)

HSP 1 Score: 122 bits (305), Expect = 2.660e-28
Identity = 82/294 (27.89%), Postives = 139/294 (47.28%), Query Frame = 1
Query:    1 LQMLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIK--GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGK-VTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPL------LSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
            + M+ED+ FK+M++   P   +P +      M     A   K+  ++K     + +T+D WTS A + Y+ +T   I+  W+L +  +     E   TG  +AA I+  +A+  +    + AV+ D   ++V    +L+E      + C  H L+   S     P + K +  AR LV  +  S  A+  LK   K  +G+  K++IQDV TRW+ST  MV RL+E + P++   +   + P       L    WA+LE +   L+ F +    L    YVT + + P +  L+
Sbjct:   29 ISMVEDEGFKQMINTFHPGYTLPSRTHFTKLMEEKYEAAAAKIIDVLKLTKSKIALTADAWTSVATEAYLGITCHFISDDWELTSFCLTTMPLEERHTGVNIAAWIEHVIARFQVPASNIVAVVHDNGSNVVLAANILKEKHGWNSVRCAGHTLQLVISHALKHPQITKALGAARCLVEHFKRSELASSKLKTKQK-QMGIPEKKLIQDVSTRWNSTFHMVTRLLEQRWPLIATLSDPTVTPRGKQHLDLKPDQWALLEKLAKALQAFESATVYLSGETYVTVSALPPLVRGLQ 321          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A671UN90_SPAAU (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Sparus aurata TaxID=8175 RepID=A0A671UN90_SPAAU)

HSP 1 Score: 121 bits (303), Expect = 1.640e-27
Identity = 83/294 (28.23%), Postives = 139/294 (47.28%), Query Frame = 1
Query:    1 LQMLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIK--GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGK-VTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPL------LSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
            + M+ED+ FK+M++   P   +P +      M     A   K+  ++K     + +T+D WTS A + Y+ +T   I+  W+L +  +     E   TG  +AA I+ A+A+  +    + AV+ D   ++V    +L+E      + C  H L+   S     P + K +  AR LV  +  S  A+  LK   K  +G+  K++IQDV TRW+ST  MV RL+E + P+    +   + P       L    WA+LE +   L+ F +    L    YVT + + P +  L+
Sbjct:   29 ISMVEDEGFKQMINTFHPGYTLPSRTHFTKLMEEKYEAAAAKIIDVLKLTKSKIALTADAWTSVATEAYLGITCHFISDDWELTSFCLTTMPLEERHTGVNIAAWIEHAIARFQVPASNIVAVVHDNGSNVVLAANILKEKRGWNSVCCAGHTLQLVISHALKHPQITKALGAARCLVEHFKRSELASSKLKTKQK-QMGIPEKKLIQDVSTRWNSTFHMVTRLLEQRWPLTATLSDPTVTPRGKQHLDLKPDQWALLEELAKALQAFESATVYLSGETYVTVSALPPLVRGLQ 321          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6G0HG17_LARCR (DUF659 domain-containing protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HG17_LARCR)

HSP 1 Score: 108 bits (271), Expect = 2.480e-23
Identity = 79/285 (27.72%), Postives = 142/285 (49.82%), Query Frame = 1
Query:   16 DKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKA----AMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRL---DPLLSAA----DWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVP 837
            ++ FK ++  + P   +P++K  V + + V A      M+ V  + + + V IT DGWTSCA D+Y+++T   +T  W L +  +       + TG  LAA ++  L +  +  K  A++TD   +MV  G      DV  H+ C  H L   +        V +++   R +VT +  S QAA +L++ +++ L + N ++I DV TRW+S+  M+ER  E +  ++    + R+   + L + A    D  +++ I+  + P +   TLL   K  T + + P
Sbjct:   69 NEGFKYLLEVLEPRYSIPDRK--VFSDKLVPALYEKVKMDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLERFWEQQPALLNAMLSRRIRRGEGLAATAVNEDDMRLIQEIIKLMSPVKVATTLLSEEKSPTISMIAP 347          
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6G0HEN4_LARCR (HECT domain-containing protein n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HEN4_LARCR)

HSP 1 Score: 108 bits (271), Expect = 6.000e-23
Identity = 79/285 (27.72%), Postives = 142/285 (49.82%), Query Frame = 1
Query:   16 DKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKA----AMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRL---DPLLSAA----DWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVP 837
            ++ FK ++  + P   +P++K  V + + V A      M+ V  + + + V IT DGWTSCA D+Y+++T   +T  W L +  +       + TG  LAA ++  L +  +  K  A++TD   +MV  G      DV  H+ C  H L   +        V +++   R +VT +  S QAA +L++ +++ L + N ++I DV TRW+S+  M+ER  E +  ++    + R+   + L + A    D  +++ I+  + P +   TLL   K  T + + P
Sbjct:   69 NEGFKYLLEVLEPRYSIPDRK--VFSDKLVPALYEKVKMDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLERFWEQQPALLNAMLSRRIRRGEGLAATAVNEDDMRLIQEIIKLMSPVKVATTLLSEEKSPTISMIAP 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE2.930e-10386.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE5.830e-7746.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI6.990e-6948.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE4.980e-6846.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.930e-6450.42Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE5.940e-5145.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A671UN94_SPAAU2.660e-2827.89DUF659 domain-containing protein n=1 Tax=Sparus au... [more]
A0A671UN90_SPAAU1.640e-2728.23Dimer_Tnp_hAT domain-containing protein n=3 Tax=Sp... [more]
A0A6G0HG17_LARCR2.480e-2327.72DUF659 domain-containing protein n=1 Tax=Larimicht... [more]
A0A6G0HEN4_LARCR6.000e-2327.72HECT domain-containing protein n=2 Tax=Larimichthy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143354contigH-elongata_contig143354:698..1555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue7.6e-59
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size858
Cds size852
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.2665887-CDS-H-elongata_contig143354:697..15491622929850.2665887-CDS-H-elongata_contig143354:697..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143354 698..1549 -
1691679182.6903-CDS-H-elongata_contig143354:697..15491691679182.6903-CDS-H-elongata_contig143354:697..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143354 698..1549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.2801301-UTR-H-elongata_contig143354:1549..15551622929850.2801301-UTR-H-elongata_contig143354:1549..1555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143354 1550..1555 -
1691679182.7028022-UTR-H-elongata_contig143354:1549..15551691679182.7028022-UTR-H-elongata_contig143354:1549..1555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143354 1550..1555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143354.2988.1prot_H-elongata_contig143354.2988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143354 698..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143354.2988.1

>prot_H-elongata_contig143354.2988.1 ID=prot_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
MLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHV
CITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAA
GIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLE
STTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKR
VIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELI
LPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN
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mRNA from alignment at H-elongata_contig143354:698..1555-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143354.2988.1 ID=mRNA_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig143354:698..1555- (Himanthalia elongata Himel1 dioecious)
CTACAGATGCTCGAGGATAAAAGCTTCAAGGAAATGGTACATGCCATACG CCCAAGCGCCGTCGTCCCAGAGAAGAAGGACTGCGTGACCACGATGCGTA CAGTGAAGGCGGCCATGATGGAGAAAGTGTCAAGACTGATCAAGGGCGAG CACGTGTGCATCACCTCCGACGGCTGGACCTCGTGCGCCAACGACACTTA CATGTCGCTGACGGTCACCCTCATTACCCGCGCCTGGAAGCTCGTCACTC TCTCGGTGGACTGCAGCAAGTCGGAAGGAACGACGACAGGTGATGCCCTT GCCGCTGGTATCAAAGCCGCGTTGGCGAAGCATGGTCTGAATGGCAAGGT TACTGCGGTTATTACTGACTGTGAGCCTTCTATGGTGAAGATGGGGCGCC TTCTTGAAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAACCACCGG CTTGAAAGCACCACCTCCATCGTCTTCAACGGGCCGGGGGTCAAAAAGGT TATGGCCTTGGCCCGCGGCCTGGTAACGCAATACACGACATCAAGCCAGG CGGCCTACATGCTCAAGAAGTTTGTCAAGACCTACCTTGGTGTTGACAAC AAGCGGGTGATCCAGGACGTGGTAACCAGGTGGTCATCCACATGCAGCAT GGTAGAGCGACTGGTAGAGCTTAAGGTACCAATCGTCCAGCACGACGCGG CGGACAGGCTGGACCCGCTGCTTTCGGCGGCAGACTGGGCGGTTCTTGAG CTGATATTGCCTTTCCTGGAACCGTTCAGGAACACTCAGACTTTGCTTGA GAGCCGTAAGTATGTGACGGGTAACTTCGTGGTGCCGTTCATCTACGACC TCCGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig143354:698..1555-

>mRNA_H-elongata_contig143354.2988.1 ID=mRNA_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig143354:698..1555- (Himanthalia elongata Himel1 dioecious)
ATGCTCGAGGATAAAAGCTTCAAGGAAATGGTACATGCCATACGCCCAAG
CGCCGTCGTCCCAGAGAAGAAGGACTGCGTGACCACGATGCGTACAGTGA
AGGCGGCCATGATGGAGAAAGTGTCAAGACTGATCAAGGGCGAGCACGTG
TGCATCACCTCCGACGGCTGGACCTCGTGCGCCAACGACACTTACATGTC
GCTGACGGTCACCCTCATTACCCGCGCCTGGAAGCTCGTCACTCTCTCGG
TGGACTGCAGCAAGTCGGAAGGAACGACGACAGGTGATGCCCTTGCCGCT
GGTATCAAAGCCGCGTTGGCGAAGCATGGTCTGAATGGCAAGGTTACTGC
GGTTATTACTGACTGTGAGCCTTCTATGGTGAAGATGGGGCGCCTTCTTG
AAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAACCACCGGCTTGAA
AGCACCACCTCCATCGTCTTCAACGGGCCGGGGGTCAAAAAGGTTATGGC
CTTGGCCCGCGGCCTGGTAACGCAATACACGACATCAAGCCAGGCGGCCT
ACATGCTCAAGAAGTTTGTCAAGACCTACCTTGGTGTTGACAACAAGCGG
GTGATCCAGGACGTGGTAACCAGGTGGTCATCCACATGCAGCATGGTAGA
GCGACTGGTAGAGCTTAAGGTACCAATCGTCCAGCACGACGCGGCGGACA
GGCTGGACCCGCTGCTTTCGGCGGCAGACTGGGCGGTTCTTGAGCTGATA
TTGCCTTTCCTGGAACCGTTCAGGAACACTCAGACTTTGCTTGAGAGCCG
TAAGTATGTGACGGGTAACTTCGTGGTGCCGTTCATCTACGACCTCCGCA
ACATGCTCGAGGATAAAAGCTTCAAGGAAATGGTACATGCCATACGCCCA
AGCGCCGTCGTCCCAGAGAAGAAGGACTGCGTGACCACGATGCGTACAGT
GAAGGCGGCCATGATGGAGAAAGTGTCAAGACTGATCAAGGGCGAGCACG
TGTGCATCACCTCCGACGGCTGGACCTCGTGCGCCAACGACACTTACATG
TCGCTGACGGTCACCCTCATTACCCGCGCCTGGAAGCTCGTCACTCTCTC
GGTGGACTGCAGCAAGTCGGAAGGAACGACGACAGGTGATGCCCTTGCCG
CTGGTATCAAAGCCGCGTTGGCGAAGCATGGTCTGAATGGCAAGGTTACT
GCGGTTATTACTGACTGTGAGCCTTCTATGGTGAAGATGGGGCGCCTTCT
TGAAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAACCACCGGCTTG
AAAGCACCACCTCCATCGTCTTCAACGGGCCGGGGGTCAAAAAGGTTATG
GCCTTGGCCCGCGGCCTGGTAACGCAATACACGACATCAAGCCAGGCGGC
CTACATGCTCAAGAAGTTTGTCAAGACCTACCTTGGTGTTGACAACAAGC
GGGTGATCCAGGACGTGGTAACCAGGTGGTCATCCACATGCAGCATGGTA
GAGCGACTGGTAGAGCTTAAGGTACCAATCGTCCAGCACGACGCGGCGGA
CAGGCTGGACCCGCTGCTTTCGGCGGCAGACTGGGCGGTTCTTGAGCTGA
TATTGCCTTTCCTGGAACCGTTCAGGAACACTCAGACTTTGCTTGAGAGC
CGTAAGTATGTGACGGGTAACTTCGTGGTGCCGTTCATCTACGACCTCCG
CAAC
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