mRNA_H-elongata_contig143354.2988.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 328 bits (840), Expect = 2.930e-103 Identity = 172/199 (86.43%), Postives = 179/199 (89.95%), Query Frame = 1
Query: 34 MVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLE-EGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVT 627
MVHAIRPSA VPEKKDCVTTMRTVK MMEKVSRLI+GE VCITSDGWTSCANDTYMSLT TLIT AWKLVTLSVDCSKSEGTTTGDALAAGIKA +AKHGL GKVTAV TDCEPSMVKMGRLL + V T IGCCN+RLEST+SIVFNGP VKKVM LARGLVT+Y TSSQAA LK+FVKTYLGVDNKRVIQDVVT
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 251 bits (641), Expect = 5.830e-77 Identity = 132/284 (46.48%), Postives = 187/284 (65.85%), Query Frame = 1
Query: 7 MLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
M+E++ F EMV ++ A VP K+ + +R +K + ++V + GEHV +TSDGWTS +NDTYM T T I+ + LV L V+C K G TTG+ L +KA +A++GL + A TDCEPSMVK GRLLEE + TH+GC HRLES TS F GPGV K +ALAR +VT+Y SSQA+ L++ ++ + V+ K+V+QDV TRW ST + + RL+ L+ PI +H+ D + PLL DW VL+++ P +PF +Q E+ K VT + V+P+I DLR+
Sbjct: 1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRD 283
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 232 bits (592), Expect = 6.990e-69 Identity = 132/275 (48.00%), Postives = 175/275 (63.64%), Query Frame = 1
Query: 34 MVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLE-EGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
MV A+ A VP +++ ++ MR VK A+ +V+ ++ E V IT+DGWTS N++YMSLTV I WKL LS+DC+K GTTTG+ LAA + + +H L G+V A +TDCEPSM+K GRLLE +G +HIGC NHR+ESTTS VFNG + + LAR LV +Y SSQ A L + L ++ V+QDV TRW ST +MV RL+ L I H++ D + PLLS DW VL LI P L PF Q LE +YVTG+ + + +LR
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCG-ILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELR 273
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 229 bits (585), Expect = 4.980e-68 Identity = 131/284 (46.13%), Postives = 177/284 (62.32%), Query Frame = 1
Query: 10 LEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDV-CTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
+E F +V + A P ++ V MR +K + +V+ ++ E+V IT+DGWTS +N++YMSLTV I W+L LS++C+K G+T G+ LA I + + +HGL G+VTA +TDCEPSMVK GRLLE G HIGC NHR+ESTTS VFNG + +A AR +V +Y SSQ + L F+ L + V+QDV TRW S+ +M+ERL+ L I H++ D + P+LS DW VL LI P L PF Q LE KYVTG+ VP I +LRN
Sbjct: 29 VEYPEFHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIG-ILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRN 310
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 227 bits (578), Expect = 1.930e-64 Identity = 120/238 (50.42%), Postives = 156/238 (65.55%), Query Frame = 1
Query: 145 GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
GEHV +TSDGWT +NDTYMS T T I+ + LV L ++C K T G+ L +KA +A++GL G+ A+ TDCE SMVK GRLLEE + TH+GC HRLES TS F GPGV K +ALARG+VT+YT SSQA+ L++ V + V+ K V+QDV TRW ST + RL+ L+ PI +H+ D PLL DW VL+L+ L+PF Q LE+ K VT V P+I DL++
Sbjct: 3 GEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQD 239
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 181 bits (459), Expect = 5.940e-51 Identity = 102/226 (45.13%), Postives = 136/226 (60.18%), Query Frame = 1
Query: 181 SCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPLLSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLRN 858
S +NDTYM+ T T I+ + LV L ++ K G TTG+ L +KA +A++GL G+ A TDCEP MVK GRLLEE + +H+GC HR ES TS F GPGV K +AL RG+VT+YT SSQA+ L++ + V+ K+V+QDV TRW ST + D + PLL+ DW VL+L+ P L PF Q LE+ K VT + V +I DLR+
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCD-IVQVERKKVVQDVETRWWSTPREI----------------DSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRD 211
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A671UN94_SPAAU (DUF659 domain-containing protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671UN94_SPAAU) HSP 1 Score: 122 bits (305), Expect = 2.660e-28 Identity = 82/294 (27.89%), Postives = 139/294 (47.28%), Query Frame = 1
Query: 1 LQMLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIK--GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGK-VTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPL------LSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
+ M+ED+ FK+M++ P +P + M A K+ ++K + +T+D WTS A + Y+ +T I+ W+L + + E TG +AA I+ +A+ + + AV+ D ++V +L+E + C H L+ S P + K + AR LV + S A+ LK K +G+ K++IQDV TRW+ST MV RL+E + P++ + + P L WA+LE + L+ F + L YVT + + P + L+
Sbjct: 29 ISMVEDEGFKQMINTFHPGYTLPSRTHFTKLMEEKYEAAAAKIIDVLKLTKSKIALTADAWTSVATEAYLGITCHFISDDWELTSFCLTTMPLEERHTGVNIAAWIEHVIARFQVPASNIVAVVHDNGSNVVLAANILKEKHGWNSVRCAGHTLQLVISHALKHPQITKALGAARCLVEHFKRSELASSKLKTKQK-QMGIPEKKLIQDVSTRWNSTFHMVTRLLEQRWPLIATLSDPTVTPRGKQHLDLKPDQWALLEKLAKALQAFESATVYLSGETYVTVSALPPLVRGLQ 321
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A671UN90_SPAAU (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Sparus aurata TaxID=8175 RepID=A0A671UN90_SPAAU) HSP 1 Score: 121 bits (303), Expect = 1.640e-27 Identity = 83/294 (28.23%), Postives = 139/294 (47.28%), Query Frame = 1
Query: 1 LQMLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIK--GEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGK-VTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRLDPL------LSAADWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVPFIYDLR 855
+ M+ED+ FK+M++ P +P + M A K+ ++K + +T+D WTS A + Y+ +T I+ W+L + + E TG +AA I+ A+A+ + + AV+ D ++V +L+E + C H L+ S P + K + AR LV + S A+ LK K +G+ K++IQDV TRW+ST MV RL+E + P+ + + P L WA+LE + L+ F + L YVT + + P + L+
Sbjct: 29 ISMVEDEGFKQMINTFHPGYTLPSRTHFTKLMEEKYEAAAAKIIDVLKLTKSKIALTADAWTSVATEAYLGITCHFISDDWELTSFCLTTMPLEERHTGVNIAAWIEHAIARFQVPASNIVAVVHDNGSNVVLAANILKEKRGWNSVCCAGHTLQLVISHALKHPQITKALGAARCLVEHFKRSELASSKLKTKQK-QMGIPEKKLIQDVSTRWNSTFHMVTRLLEQRWPLTATLSDPTVTPRGKQHLDLKPDQWALLEELAKALQAFESATVYLSGETYVTVSALPPLVRGLQ 321
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6G0HG17_LARCR (DUF659 domain-containing protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HG17_LARCR) HSP 1 Score: 108 bits (271), Expect = 2.480e-23 Identity = 79/285 (27.72%), Postives = 142/285 (49.82%), Query Frame = 1
Query: 16 DKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKA----AMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRL---DPLLSAA----DWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVP 837
++ FK ++ + P +P++K V + + V A M+ V + + + V IT DGWTSCA D+Y+++T +T W L + + + TG LAA ++ L + + K A++TD +MV G DV H+ C H L + V +++ R +VT + S QAA +L++ +++ L + N ++I DV TRW+S+ M+ER E + ++ + R+ + L + A D +++ I+ + P + TLL K T + + P
Sbjct: 69 NEGFKYLLEVLEPRYSIPDRK--VFSDKLVPALYEKVKMDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLERFWEQQPALLNAMLSRRIRRGEGLAATAVNEDDMRLIQEIIKLMSPVKVATTLLSEEKSPTISMIAP 347
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Match: A0A6G0HEN4_LARCR (HECT domain-containing protein n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HEN4_LARCR) HSP 1 Score: 108 bits (271), Expect = 6.000e-23 Identity = 79/285 (27.72%), Postives = 142/285 (49.82%), Query Frame = 1
Query: 16 DKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKA----AMMEKVSRLIKGEHVCITSDGWTSCANDTYMSLTVTLITRAWKLVTLSVDCSKSEGTTTGDALAAGIKAALAKHGLNGKVTAVITDCEPSMVKMGRLLEEGDVCTHIGCCNHRLESTTSIVFNGPGVKKVMALARGLVTQYTTSSQAAYMLKKFVKTYLGVDNKRVIQDVVTRWSSTCSMVERLVELKVPIVQHDAADRL---DPLLSAA----DWAVLELILPFLEPFRNTQTLLESRKYVTGNFVVP 837
++ FK ++ + P +P++K V + + V A M+ V + + + V IT DGWTSCA D+Y+++T +T W L + + + TG LAA ++ L + + K A++TD +MV G DV H+ C H L + V +++ R +VT + S QAA +L++ +++ L + N ++I DV TRW+S+ M+ER E + ++ + R+ + L + A D +++ I+ + P + TLL K T + + P
Sbjct: 69 NEGFKYLLEVLEPRYSIPDRK--VFSDKLVPALYEKVKMDVVDSMSRAQRVSITVDGWTSCATDSYITVTAHYVTEEWDLQSHVLQTRVFNASHTGANLAALLQNVLREWNITDKNPALVTDNARNMVVAGA---GADVTPHVRCVAHTLNLASQKALKMDRVSELLVKVRKVVTYFHKSPQAAEVLRE-IQSQLHLPNHKLIHDVCTRWNSSVDMLERFWEQQPALLNAMLSRRIRRGEGLAATAVNEDDMRLIQEIIKLMSPVKVATTLLSEEKSPTISMIAP 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143354.2988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143354.2988.1 >prot_H-elongata_contig143354.2988.1 ID=prot_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp MLEDKSFKEMVHAIRPSAVVPEKKDCVTTMRTVKAAMMEKVSRLIKGEHVback to top mRNA from alignment at H-elongata_contig143354:698..1555- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143354.2988.1 ID=mRNA_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig143354:698..1555- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143354:698..1555- >mRNA_H-elongata_contig143354.2988.1 ID=mRNA_H-elongata_contig143354.2988.1|Name=mRNA_H-elongata_contig143354.2988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig143354:698..1555- (Himanthalia elongata Himel1 dioecious)back to top |