mRNA_H-elongata_contig143168.2979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143168.2979.1
Unique NamemRNA_H-elongata_contig143168.2979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: D7FVN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN8_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 6.540e-63
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGDD 429
            I  GLVVGPALLDLIP VEAF+LLGKLGVMILV+ESGLAVD+ +IRRFG RASLAAA GV+LPT++SFALY+GVL + WK ALAVGA+LSPTSLGFSAQLLGEVG+++TP+G LICTAAVIDDVLSLLLLAEV+AL  ++
Sbjct:   35 IAGGLVVGPALLDLIPHVEAFKLLGKLGVMILVVESGLAVDIQDIRRFGARASLAAATGVLLPTVLSFALYSGVLGAGWKAALAVGAALSPTSLGFSAQLLGEVGQLTTPIGQLICTAAVIDDVLSLLLLAEVQALADEN 174          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A6H5JDJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.160e-31
Identity = 76/145 (52.41%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  121 LAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWK---------------------------------------------EALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALG 420
            LAVD+ +IR+FG RASLAAA GV+LPT +S ALY+ VL + WK                                              ALAVGA+LSPTSLGFSAQLLGEVG+++TP+G  ICTAAVIDDVLSLLLLAEV+ALG
Sbjct:    8 LAVDIQDIRQFGARASLAAATGVLLPTALSLALYSAVLGAHWKVFFCLTWPYASLRVSALLELENWSNDSHTLGSIQLVERSAFSSRLAALAVGAALSPTSLGFSAQLLGEVGQLTTPIGQFICTAAVIDDVLSLLLLAEVQALG 152          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A0G4HKA1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKA1_9ALVE)

HSP 1 Score: 110 bits (276), Expect = 1.690e-25
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLA 402
            I  GL+ GPALL  +   + F  LG++GV+ILV+ESGLAV V +    G RAS+   +G ++P +  F  Y       W+  L +GA L+PTSLGFSA LL E   ++ P G+++ TAAV+DD+LSL+LL+
Sbjct:   45 ILAGLIYGPALLGFLTETDVFVHLGEIGVLILVLESGLAVTVQKALACGLRASVMGVLGAVMPVVFVFLFYGLPFGLEWRATLCLGAVLAPTSLGFSASLLREFDLLNRPSGNVVITAAVVDDILSLVLLS 175          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7R9WHN6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHN6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.340e-25
Identity = 53/140 (37.86%), Postives = 100/140 (71.43%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGDD 429
            I  G+V+GP LLD++P+VEAF +LG++G+++LV+E+G+ +D+  ++  G R  L A VG +LP ++++ L A ++      A+A G + +PTSLG +  +L +   ++TP+G ++  AA+IDD+++L++L++++A  GD+
Sbjct:   60 IFAGIVLGPNLLDVVPYVEAFVMLGEIGLILLVLEAGIDIDLTTLKLIGKRGILIALVGTLLPIVLAY-LIAYLIGYRGTAAIAAGCAFAPTSLGIAMNVLRQSNLVNTPVGQVVVAAAIIDDMIALVILSQLQAFAGDE 198          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A1Z5JJI9_FISSO (Na_H_Exchanger domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJI9_FISSO)

HSP 1 Score: 107 bits (268), Expect = 8.290e-25
Identity = 57/139 (41.01%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
            I TG+++GP   DL+P  +A+ LLG LG+++L++++GL +D+  +++ G R  + A VG ILP  I   L   VLR S    +A+G    PTS+G + Q+LG    + TP+G LI  AA++DD+++LL+L+++EAL G+
Sbjct:   56 ILTGILLGPEGFDLVPVPKAWVLLGNLGLVLLMVQAGLEMDLAILQQVGARGFVMAIVGSILPISIGMFLSKFVLRQSGNTVIAMGCCFGPTSVGIALQVLGPCAVLETPLGQLIVAAAIVDDLIALLMLSQLEALTGN 194          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A5B8MWD5_9CHLO (Sodium/hydrogen exchanger protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWD5_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 1.300e-24
Identity = 57/133 (42.86%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   19 GLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
            G+V+GP LLD++PF  A  L+G++G+++LV+E+GL VD+  +++ G +  + AAVG +LP  +   +  G+ +    EAL+VGASL+PTS+  +  +L     + +P G LI  AAVIDDV++L+LL+E++AL
Sbjct:   63 GMVLGPELLDVVPFPMALTLVGEVGLLLLVLEAGLEVDLQMLKQIGKKGFIVAAVGSLLPLGMGTGIAIGIGKMETMEALSVGASLAPTSMAIALNILKVGKSLHSPAGQLIIAAAVIDDVIALILLSELKAL 195          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7S1X090_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X090_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 2.640e-24
Identity = 62/136 (45.59%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
            I  G++VGP  L++ P  +A  L G+LG++++V+E+G+ VD+ ++R  G R    A VG ++P  I   +  G      +EALA GASL+PTS+G S ++L E   +STP+G LI  AAVIDDV++L+LLAE+EAL
Sbjct:   78 IVAGILVGPHGLEIAPKPDALMLAGELGLVLMVMEAGMEVDLAQLRVVGARGVGVAFVGSLVPLAIGTGVGYGFFSLPIREALAAGASLAPTSMGISLKVLSEGNVLSTPIGQLIIAAAVIDDVIALVLLAELEAL 213          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7S4UWW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UWW2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.540e-24
Identity = 57/139 (41.01%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
            I  G+++GP L D IP  EAF LLG++G+++LV+E+G+ +D++ +   G R  + A +G I P  I+ A+ A  L    K ++A GA+  PTSLG +  +L +   ++TP+G LI +AAVIDD+++L++L+++ AL GD
Sbjct:  113 IFAGIILGPPLADYIPNPEAFVLLGEIGLILLVLEAGIDIDLSTLSLIGTRGIIIAIIGSIAPIAIALAI-AFALGFDTKASIAAGATFGPTSLGIAMNILRQGKIVNTPVGQLIVSAAVIDDMIALIILSQLSALEGD 250          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A061RFB8_9CHLO (Sodium:proton antiporter (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RFB8_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 3.220e-23
Identity = 58/133 (43.61%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   19 GLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
            G++VGP  + + P  +A  L G+LG++++V+E+G+ VD++++R  G R    A +G +LP  I   +  G+     +E+LAVGASL+PTS+G S ++L E   ++TP+G LI  AAVIDDV++L+LL+E+EAL
Sbjct:   81 GILVGPFGVGIAPKPDALMLAGELGLVLMVMEAGMEVDLHQLRVVGARGVGVAFLGSLLPLGIGTGIAYGIFSLPIRESLAVGASLAPTSMGISLKVLAEGKVLNTPIGQLIIAAAVIDDVIALVLLSELEAL 213          
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: K0SGW5_THAOC (Na_H_Exchanger domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGW5_THAOC)

HSP 1 Score: 104 bits (259), Expect = 3.280e-23
Identity = 55/139 (39.57%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
            I TG+++GP L   +P  E+F +LG++G+++LVIE+G+ +D+N ++  G R  L A VG +LP  I+  +   +  ++ + A+A GA   PTSLG +  +L +   ++TP+G LI +AAVIDD+++L++L+++ AL GD
Sbjct:  223 IFTGILLGPNLAQYVPNPESFVMLGEIGLILLVIEAGIDIDLNMLKLIGSRGMLIAIVGSVLPIGIALVIAIALDPTNIQSAIAAGACFGPTSLGIAMNILRQGKIVNTPVGQLIVSAAVIDDMIALIILSQLGALAGD 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN8_ECTSI6.540e-6379.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JDJ7_9PHAE4.160e-3152.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4HKA1_9ALVE1.690e-2545.80Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7R9WHN6_9STRA5.340e-2537.86Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5JJI9_FISSO8.290e-2541.01Na_H_Exchanger domain-containing protein n=1 Tax=F... [more]
A0A5B8MWD5_9CHLO1.300e-2442.86Sodium/hydrogen exchanger protein n=1 Tax=Chloropi... [more]
A0A7S1X090_9CHLO2.640e-2445.59Hypothetical protein (Fragment) n=2 Tax=Tetraselmi... [more]
A0A7S4UWW2_9STRA9.540e-2441.01Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A061RFB8_9CHLO3.220e-2343.61Sodium:proton antiporter (Fragment) n=1 Tax=Tetras... [more]
K0SGW5_THAOC3.280e-2339.57Na_H_Exchanger domain-containing protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143168contigH-elongata_contig143168:406..1590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.6e-52
Seed eggNOG ortholog2880.D7FVN8
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.5695724-CDS-H-elongata_contig143168:405..5851622929849.5695724-CDS-H-elongata_contig143168:405..585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143168 406..585 -
1691679182.4220247-CDS-H-elongata_contig143168:405..5851691679182.4220247-CDS-H-elongata_contig143168:405..585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143168 406..585 -
1622929849.5908802-CDS-H-elongata_contig143168:1341..15901622929849.5908802-CDS-H-elongata_contig143168:1341..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143168 1342..1590 -
1691679182.4310167-CDS-H-elongata_contig143168:1341..15901691679182.4310167-CDS-H-elongata_contig143168:1341..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143168 1342..1590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143168.2979.1prot_H-elongata_contig143168.2979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143168 406..1590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143168.2979.1

>prot_H-elongata_contig143168.2979.1 ID=prot_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MFLIRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRR
FGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFS
AQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGDD
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mRNA from alignment at H-elongata_contig143168:406..1590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143168.2979.1 ID=mRNA_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig143168:406..1590- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTAATCCGAACAGGCCTCGTCGTTGGGCCGGCGCTATTGGACTT GATCCCATTCGTCGAGGCTTTCCGCCTTCTCGGTAAGCTGGGCGTCATGA TCCTCGTCATCGAGTCAGGACTCGCCGTCGACGTCAACGAAATTCGGCGC TTCGGGTTCAGGGCTTCGCTCGCTGCCGCGGTCGGCGTCATCCTTCCGAC CCTCATCAGTTTCGCCCTCTACGCCGGAGTTCTTCGCTCGAGCTGGAAGG TGATCCAAGCCAGTCCCGCACGAGTACTTCATCTCACGTGTGGTACTAAA TTCCCTGATAGCGAGGAGAGCTCGTCCGCGAGGATACTGTCGCAGCTGTA GCTGATGTTGCTGTTGTTGTTGTACCTTACTATAGCTTGACCGAGTGGGT CCAACCCTCCCTAATGCAAGCTTCCCCTTTACCGTCCCGTTCCGTTCGGG CCCGTCCGTAATCACAAGAAACCCACCCAACGTTTCCCCCGGGTCGCGCC TAAAATGTGTTCATGGGTGTGTGTTCAGACCCCCGCCCGCCGCCCAGGTA AGGGTTGTATTTCGCTTACTCGCGCTCTCACGGTGTCCGCGTCGAACACC ATCGAACACCGCACGGCCACGGTTAGTGTACGACTATCCCCTTGAAGCAT CGTTGTGTAGACATAATAACCTTCGAACTCAGGCCAATTATGTACCATAT TTGTGGCCACCTCTCGACTCCTGTCACCGCACCGCAGATCGACAGCAGTT GCCGTTGTGCGTCGGGCTCGGCGTCTTTAGATTCCGGGGGCGAGCTGACG ATATACGACGTAACGAACAGCGGGTGGATCGTTCCTTGTGCGTGTGTCCC ACCGAGGACTCATTCAGAGCGCCGCGGGTTACAATCGAGAAACTGTCGGC GCTGGGGCACGCTCCCCGAGTGTAGTATATTTTAGGTGCTTCTTAGCCGC CGTTGCCGCCGCTGCCTTCTCCCTCGGGATTCGGTCCCGCCCCCCCCGCC TGCAGGAAGCTCTGGCGGTGGGCGCGTCCCTATCTCCGACGAGCCTGGGG TTCAGCGCGCAGCTCCTCGGGGAAGTGGGTGAGATGTCGACCCCGATGGG CCACCTGATTTGCACTGCGGCGGTGATCGACGATGTACTTTCGCTTCTCC TCCTTGCCGAGGTGGAAGCGCTTGGAGGCGACGAT
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Coding sequence (CDS) from alignment at H-elongata_contig143168:406..1590-

>mRNA_H-elongata_contig143168.2979.1 ID=mRNA_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig143168:406..1590- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTAATCCGAACAGGCCTCGTCGTTGGGCCGGCGCTATTGGACTT
GATCCCATTCGTCGAGGCTTTCCGCCTTCTCGGTAAGCTGGGCGTCATGA
TCCTCGTCATCGAGTCAGGACTCGCCGTCGACGTCAACGAAATTCGGCGC
TTCGGGTTCAGGGCTTCGCTCGCTGCCGCGGTCGGCGTCATCCTTCCGAC
CCTCATCAGTTTCGCCCTCTACGCCGGAGTTCTTCGCTCGAGCTGGAAGA
TGTTTTTAATCCGAACAGGCCTCGTCGTTGGGCCGGCGCTATTGGACTTG
ATCCCATTCGTCGAGGCTTTCCGCCTTCTCGGTAAGCTGGGCGTCATGAT
CCTCGTCATCGAGTCAGGACTCGCCGTCGACGTCAACGAAATTCGGCGCT
TCGGGTTCAGGGCTTCGCTCGCTGCCGCGGTCGGCGTCATCCTTCCGACC
CTCATCAGTTTCGCCCTCTACGCCGGAGTTCTTCGCTCGAGCTGGAAGGA
AGCTCTGGCGGTGGGCGCGTCCCTATCTCCGACGAGCCTGGGGTTCAGCG
CGCAGCTCCTCGGGGAAGTGGGTGAGATGTCGACCCCGATGGGCCACCTG
ATTTGCACTGCGGCGGTGATCGACGATGTACTTTCGCTTCTCCTCCTTGC
CGAGGTGGAAGCGCTTGGAGGCGACGATGAAGCTCTGGCGGTGGGCGCGT
CCCTATCTCCGACGAGCCTGGGGTTCAGCGCGCAGCTCCTCGGGGAAGTG
GGTGAGATGTCGACCCCGATGGGCCACCTGATTTGCACTGCGGCGGTGAT
CGACGATGTACTTTCGCTTCTCCTCCTTGCCGAGGTGGAAGCGCTTGGAG
GCGACGAT
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