mRNA_H-elongata_contig143168.2979.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: D7FVN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN8_ECTSI) HSP 1 Score: 209 bits (533), Expect = 6.540e-63 Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGDD 429
I GLVVGPALLDLIP VEAF+LLGKLGVMILV+ESGLAVD+ +IRRFG RASLAAA GV+LPT++SFALY+GVL + WK ALAVGA+LSPTSLGFSAQLLGEVG+++TP+G LICTAAVIDDVLSLLLLAEV+AL ++
Sbjct: 35 IAGGLVVGPALLDLIPHVEAFKLLGKLGVMILVVESGLAVDIQDIRRFGARASLAAATGVLLPTVLSFALYSGVLGAGWKAALAVGAALSPTSLGFSAQLLGEVGQLTTPIGQLICTAAVIDDVLSLLLLAEVQALADEN 174
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A6H5JDJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 4.160e-31 Identity = 76/145 (52.41%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 121 LAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWK---------------------------------------------EALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALG 420
LAVD+ +IR+FG RASLAAA GV+LPT +S ALY+ VL + WK ALAVGA+LSPTSLGFSAQLLGEVG+++TP+G ICTAAVIDDVLSLLLLAEV+ALG
Sbjct: 8 LAVDIQDIRQFGARASLAAATGVLLPTALSLALYSAVLGAHWKVFFCLTWPYASLRVSALLELENWSNDSHTLGSIQLVERSAFSSRLAALAVGAALSPTSLGFSAQLLGEVGQLTTPIGQFICTAAVIDDVLSLLLLAEVQALG 152
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A0G4HKA1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKA1_9ALVE) HSP 1 Score: 110 bits (276), Expect = 1.690e-25 Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLA 402
I GL+ GPALL + + F LG++GV+ILV+ESGLAV V + G RAS+ +G ++P + F Y W+ L +GA L+PTSLGFSA LL E ++ P G+++ TAAV+DD+LSL+LL+
Sbjct: 45 ILAGLIYGPALLGFLTETDVFVHLGEIGVLILVLESGLAVTVQKALACGLRASVMGVLGAVMPVVFVFLFYGLPFGLEWRATLCLGAVLAPTSLGFSASLLREFDLLNRPSGNVVITAAVVDDILSLVLLS 175
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7R9WHN6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHN6_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.340e-25 Identity = 53/140 (37.86%), Postives = 100/140 (71.43%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGDD 429
I G+V+GP LLD++P+VEAF +LG++G+++LV+E+G+ +D+ ++ G R L A VG +LP ++++ L A ++ A+A G + +PTSLG + +L + ++TP+G ++ AA+IDD+++L++L++++A GD+
Sbjct: 60 IFAGIVLGPNLLDVVPYVEAFVMLGEIGLILLVLEAGIDIDLTTLKLIGKRGILIALVGTLLPIVLAY-LIAYLIGYRGTAAIAAGCAFAPTSLGIAMNVLRQSNLVNTPVGQVVVAAAIIDDMIALVILSQLQAFAGDE 198
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A1Z5JJI9_FISSO (Na_H_Exchanger domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJI9_FISSO) HSP 1 Score: 107 bits (268), Expect = 8.290e-25 Identity = 57/139 (41.01%), Postives = 93/139 (66.91%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
I TG+++GP DL+P +A+ LLG LG+++L++++GL +D+ +++ G R + A VG ILP I L VLR S +A+G PTS+G + Q+LG + TP+G LI AA++DD+++LL+L+++EAL G+
Sbjct: 56 ILTGILLGPEGFDLVPVPKAWVLLGNLGLVLLMVQAGLEMDLAILQQVGARGFVMAIVGSILPISIGMFLSKFVLRQSGNTVIAMGCCFGPTSVGIALQVLGPCAVLETPLGQLIVAAAIVDDLIALLMLSQLEALTGN 194
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A5B8MWD5_9CHLO (Sodium/hydrogen exchanger protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWD5_9CHLO) HSP 1 Score: 108 bits (269), Expect = 1.300e-24 Identity = 57/133 (42.86%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 19 GLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
G+V+GP LLD++PF A L+G++G+++LV+E+GL VD+ +++ G + + AAVG +LP + + G+ + EAL+VGASL+PTS+ + +L + +P G LI AAVIDDV++L+LL+E++AL
Sbjct: 63 GMVLGPELLDVVPFPMALTLVGEVGLLLLVLEAGLEVDLQMLKQIGKKGFIVAAVGSLLPLGMGTGIAIGIGKMETMEALSVGASLAPTSMAIALNILKVGKSLHSPAGQLIIAAAVIDDVIALILLSELKAL 195
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7S1X090_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X090_9CHLO) HSP 1 Score: 107 bits (267), Expect = 2.640e-24 Identity = 62/136 (45.59%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
I G++VGP L++ P +A L G+LG++++V+E+G+ VD+ ++R G R A VG ++P I + G +EALA GASL+PTS+G S ++L E +STP+G LI AAVIDDV++L+LLAE+EAL
Sbjct: 78 IVAGILVGPHGLEIAPKPDALMLAGELGLVLMVMEAGMEVDLAQLRVVGARGVGVAFVGSLVPLAIGTGVGYGFFSLPIREALAAGASLAPTSMGISLKVLSEGNVLSTPIGQLIIAAAVIDDVIALVLLAELEAL 213
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A7S4UWW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UWW2_9STRA) HSP 1 Score: 103 bits (257), Expect = 9.540e-24 Identity = 57/139 (41.01%), Postives = 94/139 (67.63%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
I G+++GP L D IP EAF LLG++G+++LV+E+G+ +D++ + G R + A +G I P I+ A+ A L K ++A GA+ PTSLG + +L + ++TP+G LI +AAVIDD+++L++L+++ AL GD
Sbjct: 113 IFAGIILGPPLADYIPNPEAFVLLGEIGLILLVLEAGIDIDLSTLSLIGTRGIIIAIIGSIAPIAIALAI-AFALGFDTKASIAAGATFGPTSLGIAMNILRQGKIVNTPVGQLIVSAAVIDDMIALIILSQLSALEGD 250
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: A0A061RFB8_9CHLO (Sodium:proton antiporter (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RFB8_9CHLO) HSP 1 Score: 104 bits (259), Expect = 3.220e-23 Identity = 58/133 (43.61%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 19 GLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEAL 417
G++VGP + + P +A L G+LG++++V+E+G+ VD++++R G R A +G +LP I + G+ +E+LAVGASL+PTS+G S ++L E ++TP+G LI AAVIDDV++L+LL+E+EAL
Sbjct: 81 GILVGPFGVGIAPKPDALMLAGELGLVLMVMEAGMEVDLHQLRVVGARGVGVAFLGSLLPLGIGTGIAYGIFSLPIRESLAVGASLAPTSMGISLKVLAEGKVLNTPIGQLIIAAAVIDDVIALVLLSELEAL 213
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Match: K0SGW5_THAOC (Na_H_Exchanger domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGW5_THAOC) HSP 1 Score: 104 bits (259), Expect = 3.280e-23 Identity = 55/139 (39.57%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 10 IRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRFGFRASLAAAVGVILPTLISFALYAGVLRSSWKEALAVGASLSPTSLGFSAQLLGEVGEMSTPMGHLICTAAVIDDVLSLLLLAEVEALGGD 426
I TG+++GP L +P E+F +LG++G+++LVIE+G+ +D+N ++ G R L A VG +LP I+ + + ++ + A+A GA PTSLG + +L + ++TP+G LI +AAVIDD+++L++L+++ AL GD
Sbjct: 223 IFTGILLGPNLAQYVPNPESFVMLGEIGLILLVIEAGIDIDLNMLKLIGSRGMLIAIVGSVLPIGIALVIAIALDPTNIQSAIAAGACFGPTSLGIAMNILRQGKIVNTPVGQLIVSAAVIDDMIALIILSQLGALAGD 361 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143168.2979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143168.2979.1 >prot_H-elongata_contig143168.2979.1 ID=prot_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp MFLIRTGLVVGPALLDLIPFVEAFRLLGKLGVMILVIESGLAVDVNEIRRback to top mRNA from alignment at H-elongata_contig143168:406..1590- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143168.2979.1 ID=mRNA_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig143168:406..1590- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143168:406..1590- >mRNA_H-elongata_contig143168.2979.1 ID=mRNA_H-elongata_contig143168.2979.1|Name=mRNA_H-elongata_contig143168.2979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig143168:406..1590- (Himanthalia elongata Himel1 dioecious)back to top |